Clone Name | rbart22c02 |
---|---|
Clone Library Name | barley_pub |
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 208 aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 267 |||||| |||| |||||||||||||||| || || | ||| ||||| ||||| ||||| Sbjct: 94224 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 94165 Query: 268 aggcgaggccatatgaaggcgct 290 || || ||||||||| ||||||| Sbjct: 94164 agccgcggccatatgtaggcgct 94142
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 208 aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 267 |||||| |||| |||||||||||||||| || || | ||| ||||| ||||| ||||| Sbjct: 24728264 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 24728323 Query: 268 aggcgaggccatatgaaggcgct 290 || || ||||||||| ||||||| Sbjct: 24728324 agccgcggccatatgtaggcgct 24728346
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 208 aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 267 |||||| |||| |||||||||||||||| || || | ||| ||||| ||||| ||||| Sbjct: 25039934 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 25039993 Query: 268 aggcgaggccatatgaaggcgct 290 || || ||||||||| ||||||| Sbjct: 25039994 agccgcggccatatgtaggcgct 25040016
>emb|BX897690.13| Zebrafish DNA sequence from clone CH211-197O9 in linkage group 20, complete sequence Length = 128296 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Minus Query: 109 aacatggatgcatttggatttgc 131 ||||||||||||||||||||||| Sbjct: 47497 aacatggatgcatttggatttgc 47475 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 atggatgcatttggatttgc 131 |||||||||||||||||||| Sbjct: 46879 atggatgcatttggatttgc 46860
>gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q21-q23, complete sequence Length = 153053 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 20 atttattcaatggagaaacttttacaactc 49 |||| ||||||||| ||||||||||||||| Sbjct: 35388 attttttcaatggaaaaacttttacaactc 35359
>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence Length = 145544 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 20 atttattcaatggagaaacttttacaactc 49 |||| ||||||||| ||||||||||||||| Sbjct: 84355 attttttcaatggaaaaacttttacaactc 84384
>gb|AC106743.4| Homo sapiens chromosome 16 clone RP11-116D9, complete sequence Length = 117710 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 128 ttgcaggagaagaattaatttagaga 153 ||||||||| |||||||||||||||| Sbjct: 92650 ttgcaggaggagaattaatttagaga 92675
>emb|AL451005.9| Human DNA sequence from clone RP11-92B10 on chromosome X Contains the 5' end of a variant of the CUL4B gene for cullin 4B and the 5' end of a variant of the gene for MCT-1 protein (MCT-1), complete sequence Length = 26768 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 atccacgttcctgggtttccc 315 ||||||||||||||||||||| Sbjct: 17593 atccacgttcctgggtttccc 17573
>gb|AC021325.5|AC021325 Homo sapiens chromosome , clone RP11-23N15, complete sequence Length = 180568 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 attaatttagagacgaggtct 161 ||||||||||||||||||||| Sbjct: 27684 attaatttagagacgaggtct 27664
>emb|AL928801.6| Mouse DNA sequence from clone RP23-116P4 on chromosome 2, complete sequence Length = 132674 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 ttggatttgcaggagaagaattaat 146 ||||||||| ||||||||||||||| Sbjct: 28242 ttggatttggaggagaagaattaat 28266
>gb|AC115031.11| Mus musculus chromosome 3, clone RP24-257J5, complete sequence Length = 170460 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 ttcaatggagaaacttttacaactc 49 ||||||||| ||||||||||||||| Sbjct: 151426 ttcaatggaaaaacttttacaactc 151402
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ccggcatcgccagcgcggcg 390 |||||||||||||||||||| Sbjct: 3198311 ccggcatcgccagcgcggcg 3198292
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 accccgtgcacagcctgccg 357 |||||||||||||||||||| Sbjct: 3446202 accccgtgcacagcctgccg 3446221
>ref|XM_477237.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1047 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 205 ccaaggtactccgcggtgagaggcttgaagac 236 ||||| ||| |||| ||||||||||||||||| Sbjct: 1037 ccaagatacgccgccgtgagaggcttgaagac 1006
>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tttatttattcaatggagaa 36 |||||||||||||||||||| Sbjct: 63221 tttatttattcaatggagaa 63240
>ref|XM_643073.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (528.t00001) partial mRNA Length = 2586 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 atttggatttgcaggagaag 139 |||||||||||||||||||| Sbjct: 345 atttggatttgcaggagaag 364
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ccggcatcgccagcgcggcg 390 |||||||||||||||||||| Sbjct: 3649866 ccggcatcgccagcgcggcg 3649847
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ccggcatcgccagcgcggcg 390 |||||||||||||||||||| Sbjct: 3437082 ccggcatcgccagcgcggcg 3437063
>emb|AL356967.23| Human DNA sequence from clone RP11-427E4 on chromosome 6 Contains a novel pseudogene, complete sequence Length = 163869 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 attcaatggagaaactttta 43 |||||||||||||||||||| Sbjct: 39215 attcaatggagaaactttta 39196
>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10, complete sequence Length = 102275 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tttatttattcaatggagaa 36 |||||||||||||||||||| Sbjct: 62061 tttatttattcaatggagaa 62080
>gb|AC149226.11| Danio rerio clone ch211-252j18, complete sequence Length = 154059 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaggcaaactggagcttta 20 |||||||||||||||||||| Sbjct: 69953 gaaggcaaactggagcttta 69972
>gb|AC159628.2| Mus musculus BAC clone RP24-206C4 from chromosome 12, complete sequence Length = 161791 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaggcaaactggagctttat 21 |||||||||||||||||||| Sbjct: 64903 aaggcaaactggagctttat 64884
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 205 ccaaggtactccgcggtgagaggcttgaagac 236 ||||| ||| |||| ||||||||||||||||| Sbjct: 8092508 ccaagatacgccgccgtgagaggcttgaagac 8092477
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tttatttattcaatggagaa 36 |||||||||||||||||||| Sbjct: 5376547 tttatttattcaatggagaa 5376566
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ccggcatcgccagcgcggcg 390 |||||||||||||||||||| Sbjct: 3186973 ccggcatcgccagcgcggcg 3186954
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 205 ccaaggtactccgcggtgagaggcttgaagac 236 ||||| ||| |||| ||||||||||||||||| Sbjct: 26280 ccaagatacgccgccgtgagaggcttgaagac 26249
>dbj|AK069089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008B14, full insert sequence Length = 3756 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 tttatttattcaatggagaa 36 |||||||||||||||||||| Sbjct: 3680 tttatttattcaatggagaa 3699
>emb|AL445363.7|CNS07ECY Human chromosome 14 DNA sequence BAC R-671J11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181987 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttaatttagagacgaggtct 161 |||||||||||||||||||| Sbjct: 120425 ttaatttagagacgaggtct 120406
>gb|AY110277.1| Zea mays CL615_-1 mRNA sequence Length = 982 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 aaggcgctgatgatccacgt 302 |||||||||||||||||||| Sbjct: 617 aaggcgctgatgatccacgt 636
>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15, complete sequence Length = 224998 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaaggcaaactggagcttta 20 |||||||||||||||||||| Sbjct: 25502 gaaggcaaactggagcttta 25483
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 ccggcatcgccagcgcggcg 390 |||||||||||||||||||| Sbjct: 3009575 ccggcatcgccagcgcggcg 3009556 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,303,598 Number of Sequences: 3902068 Number of extensions: 3303598 Number of successful extensions: 66402 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66106 Number of HSP's gapped (non-prelim): 296 length of query: 403 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 381 effective length of database: 17,147,199,772 effective search space: 6533083113132 effective search space used: 6533083113132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)