ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
4emb|AL731875.2|CNS08C8F Oryza sativa chromosome 12, . BAC OJ1060... 86 1e-13
5gb|BT018456.1| Zea mays clone EL01N0409A08.d mRNA sequence 46 0.095
6gb|AY106324.1| Zea mays PCO133117 mRNA sequence 46 0.095
7gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complet... 42 1.5
8emb|AL157777.5| Human DNA sequence from clone RP11-76H14 on chro... 42 1.5
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
10dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
11gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 11... 42 1.5
12emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chro... 42 1.5
13gb|AC145545.2| Homo sapiens chromosome UNKNOWN clone RP11-1365M9... 40 5.9
14ref|NM_120969.2| Arabidopsis thaliana ANAC082; transcription fac... 40 5.9
15gb|BT020263.1| Arabidopsis thaliana At5g09330 gene, complete cds 40 5.9
16gb|AE014827.1| Plasmodium falciparum 3D7 chromosome 14 section 1... 40 5.9
17ref|NM_001033950.1| Strongylocentrotus purpuratus egg permeabili... 40 5.9
18ref|XM_459173.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.9
19ref|NM_001040465.1| Gallus gallus Dicer1, Dcr-1 homolog (Drosoph... 40 5.9
20ref|XM_457407.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.9
21ref|XM_716947.1| Candida albicans SC5314 hypothetical protein (C... 40 5.9
22ref|XM_716786.1| Candida albicans SC5314 hypothetical protein (C... 40 5.9
23gb|AY701853.1| Strongylocentrotus purpuratus egg permeability gl... 40 5.9
24gb|AC002433.2| Homo sapiens BAC clone CTA-317M2 from 7, complete... 40 5.9
25gb|AC146510.3| Pan troglodytes BAC clone RP43-64B24 from 7, comp... 40 5.9
26gb|AC129778.5| Homo sapiens BAC clone RP11-1221G12 from UL, comp... 40 5.9
27gb|AC134592.5| Mus musculus BAC clone RP23-381O3 from chromosome... 40 5.9
28gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosom... 40 5.9
29gb|AC117616.8| Mus musculus chromosome 9, clone RP23-111P13, com... 40 5.9
30gb|AF426384.1| Danio rerio deltaD protein gene, complete cds 40 5.9
31emb|CR727366.2|CNS0GO6K Tetraodon nigroviridis full-length cDNA 40 5.9
32gb|AC145920.1| Pan troglodytes BAC clone RP43-10C15 from 7, comp... 40 5.9
33emb|BX255923.13| Human DNA sequence from clone RP11-115J7 on chr... 40 5.9
34emb|BX284632.11| Human DNA sequence from clone RP11-460E7 on chr... 40 5.9
35emb|AL512605.13| Human DNA sequence from clone RP11-15J10 on chr... 40 5.9
36emb|AL353637.21| Human DNA sequence from clone RP11-159H20 on ch... 40 5.9
37emb|AL353608.20| Human DNA sequence from clone RP11-561O23 on ch... 40 5.9
38gb|AC167968.5| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.9
39ref|XM_786036.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.9
40emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 40 5.9
41emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 5.9
42emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC... 40 5.9
43emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 i... 40 5.9
44gb|AC099484.4| Homo sapiens chromosome 5 clone CTD-2004P1, compl... 40 5.9
45dbj|AB253768.1| Gallus gallus Dicer mRNA for Dicer protein, comp... 40 5.9
46gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, comp... 40 5.9
47gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete ... 40 5.9
48gb|AY772740.1| Listonella pelagia phage phiHSIC, complete genome 40 5.9
49gb|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22... 40 5.9
50emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 i... 40 5.9
51emb|AL731809.17| Human DNA sequence from clone RP13-354N4 on chr... 40 5.9
52gb|AC006115.1|AC006115 Homo sapiens chromosome 19, BAC CIT-B-470... 40 5.9
53emb|AL772250.12| Zebrafish DNA sequence from clone CH211-160M22,... 40 5.9 
>dbj|AK073696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063H10, full
            insert sequence
          Length = 1236

 Score =  103 bits (52), Expect = 5e-19
 Identities = 109/128 (85%)
 Strand = Plus / Minus

                                                                        
Query: 307  ttttcattgccgatggccctctgggagcgcaaccactctgtaaaatggaacagctctctc 366
            |||||| ||||| |||||||| ||||| | ||||||||| || || || |||||||| | 
Sbjct: 1016 ttttcactgccggtggccctccgggagaggaaccactctatagaacggcacagctctttg 957

                                                                        
Query: 367  tggtagattcccatcctcttcgtcatcatcaaataagagattgtaatcatcagatttcct 426
            ||||||||| |||||||| |||||||||||||| |||||    ||||| |||||||||||
Sbjct: 956  tggtagatttccatcctcctcgtcatcatcaaacaagagtagataatcgtcagatttcct 897

                    
Query: 427  cttacgat 434
            ||||||||
Sbjct: 896  cttacgat 889
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                            
Query: 307      ttttcattgccgatggccctctgggagcgcaaccactctgtaaaatggaacagctctctc 366
                |||||| ||||| |||||||| ||||| | ||||||||| || || || |||||||| | 
Sbjct: 11218026 ttttcactgccggtggccctccgggagaggaaccactctatagaacggcacagctctttg 11218085

                                                       
Query: 367      tggtagattcccatcctcttcgtcatcatcaaataagag 405
                ||||||||| |||||||| |||||||||||||| |||||
Sbjct: 11218086 tggtagatttccatcctcctcgtcatcatcaaacaagag 11218124
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                            
Query: 307      ttttcattgccgatggccctctgggagcgcaaccactctgtaaaatggaacagctctctc 366
                |||||| ||||| |||||||| ||||| | ||||||||| || || || |||||||| | 
Sbjct: 11217697 ttttcactgccggtggccctccgggagaggaaccactctatagaacggcacagctctttg 11217756

                                                       
Query: 367      tggtagattcccatcctcttcgtcatcatcaaataagag 405
                ||||||||| |||||||| |||||||||||||| |||||
Sbjct: 11217757 tggtagatttccatcctcctcgtcatcatcaaacaagag 11217795
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>emb|AL731875.2|CNS08C8F Oryza sativa chromosome 12, . BAC OJ1060_G11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 108805

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                         
Query: 307   ttttcattgccgatggccctctgggagcgcaaccactctgtaaaatggaacagctctctc 366
             |||||| ||||| |||||||| ||||| | ||||||||| || || || |||||||| | 
Sbjct: 38632 ttttcactgccggtggccctccgggagaggaaccactctatagaacggcacagctctttg 38573

                                                    
Query: 367   tggtagattcccatcctcttcgtcatcatcaaataagag 405
             ||||||||| |||||||| |||||||||||||| |||||
Sbjct: 38572 tggtagatttccatcctcctcgtcatcatcaaacaagag 38534
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>gb|BT018456.1| Zea mays clone EL01N0409A08.d mRNA sequence
          Length = 1170

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 410 taatcatcagatttcctcttacgatga 436
           ||||||||||| |||||||||||||||
Sbjct: 816 taatcatcagacttcctcttacgatga 790
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>gb|AY106324.1| Zea mays PCO133117 mRNA sequence
          Length = 711

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 410 taatcatcagatttcctcttacgatga 436
           ||||||||||| |||||||||||||||
Sbjct: 274 taatcatcagacttcctcttacgatga 248
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>gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complete sequence
          Length = 189254

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   gtgggctgcaggtaaaataag 225
             |||||||||||||||||||||
Sbjct: 89347 gtgggctgcaggtaaaataag 89367
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>emb|AL157777.5| Human DNA sequence from clone RP11-76H14 on chromosome 6 Contains the
              HTR1E gene for 5-hydroxytryptamine (serotonin) receptor, a
              pseudogene similar to the  5' end of ST13 (suppression of
              tumorigenicity 13, a Hsp70-interacting protein), a
              pseudogene similar to the 5' end of a Tec protein-tyrosine
              kinase, a pseudogene similar to 60S ribosomal protein L7,a
              pseudogene similar to the bifunctional
              methylenetetrahydrofolate dehydrogenase/cyclohydrolase
              mitochondria and two CpG islands, complete sequence
          Length = 169669

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 243    cttgaaaactgtcatcttcgt 263
              |||||||||||||||||||||
Sbjct: 116998 cttgaaaactgtcatcttcgt 116978
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 170      caatggtagtagaataatatgaact 194
                |||||||||||||||||| ||||||
Sbjct: 12810088 caatggtagtagaataatttgaact 12810112
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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0073A18
          Length = 176755

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 170   caatggtagtagaataatatgaact 194
             |||||||||||||||||| ||||||
Sbjct: 29570 caatggtagtagaataatttgaact 29594
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>gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 118 of 118 of the complete
              sequence
          Length = 256818

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 205    gtgggctgcaggtaaaataag 225
              |||||||||||||||||||||
Sbjct: 156911 gtgggctgcaggtaaaataag 156931
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>emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chromosome 2, complete
              sequence
          Length = 189821

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    caaccactctgtaaaatggaa 356
              |||||||||||||||||||||
Sbjct: 104845 caaccactctgtaaaatggaa 104865
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>gb|AC145545.2| Homo sapiens chromosome UNKNOWN clone RP11-1365M9, complete sequence
          Length = 184813

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gatatatatacatacaatgg 175
              ||||||||||||||||||||
Sbjct: 172150 gatatatatacatacaatgg 172131
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>ref|NM_120969.2| Arabidopsis thaliana ANAC082; transcription factor AT5G09330
           (ANAC082) mRNA, complete cds
          Length = 1728

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 382 ctcttcgtcatcatcaaata 401
           ||||||||||||||||||||
Sbjct: 837 ctcttcgtcatcatcaaata 818
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>gb|BT020263.1| Arabidopsis thaliana At5g09330 gene, complete cds
          Length = 2026

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 382  ctcttcgtcatcatcaaata 401
            ||||||||||||||||||||
Sbjct: 1227 ctcttcgtcatcatcaaata 1208
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>gb|AE014827.1| Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete
              sequence
          Length = 254436

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    tagatatatatacatacaat 173
              ||||||||||||||||||||
Sbjct: 116697 tagatatatatacatacaat 116716
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>ref|NM_001033950.1| Strongylocentrotus purpuratus egg permeability glycoprotein (ABCB1),
            mRNA
          Length = 3990

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  catcctcttcgtcatcatca 397
            ||||||||||||||||||||
Sbjct: 2095 catcctcttcgtcatcatca 2076
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>ref|XM_459173.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D17237g)
           partial mRNA
          Length = 2100

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 catcctcttcgtcatcatca 397
           ||||||||||||||||||||
Sbjct: 340 catcctcttcgtcatcatca 321
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>ref|NM_001040465.1| Gallus gallus Dicer1, Dcr-1 homolog (Drosophila) (DICER1), mRNA
          Length = 6152

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  catcctcttcgtcatcatca 397
            ||||||||||||||||||||
Sbjct: 4291 catcctcttcgtcatcatca 4272
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>ref|XM_457407.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B10659g)
           partial mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 378 catcctcttcgtcatcatca 397
           ||||||||||||||||||||
Sbjct: 440 catcctcttcgtcatcatca 459
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>ref|XM_716947.1| Candida albicans SC5314 hypothetical protein (CaO19_11453), mRNA
          Length = 744

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 catcctcttcgtcatcatca 397
           ||||||||||||||||||||
Sbjct: 625 catcctcttcgtcatcatca 606



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 catcctcttcgtcatcatca 397
           ||||||||||||||||||||
Sbjct: 607 catcctcttcgtcatcatca 588
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>ref|XM_716786.1| Candida albicans SC5314 hypothetical protein (CaO19_3970), mRNA
          Length = 744

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 catcctcttcgtcatcatca 397
           ||||||||||||||||||||
Sbjct: 625 catcctcttcgtcatcatca 606



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 catcctcttcgtcatcatca 397
           ||||||||||||||||||||
Sbjct: 607 catcctcttcgtcatcatca 588
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>gb|AY701853.1| Strongylocentrotus purpuratus egg permeability glycoprotein (ABCB1)
            mRNA, complete cds
          Length = 3990

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  catcctcttcgtcatcatca 397
            ||||||||||||||||||||
Sbjct: 2095 catcctcttcgtcatcatca 2076
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>gb|AC002433.2| Homo sapiens BAC clone CTA-317M2 from 7, complete sequence
          Length = 139919

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    aaaacaaccctcaatcaact 91
             ||||||||||||||||||||
Sbjct: 80526 aaaacaaccctcaatcaact 80507
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>gb|AC146510.3| Pan troglodytes BAC clone RP43-64B24 from 7, complete sequence
          Length = 153089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     aaaacaaccctcaatcaact 91
              ||||||||||||||||||||
Sbjct: 138111 aaaacaaccctcaatcaact 138130
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>gb|AC129778.5| Homo sapiens BAC clone RP11-1221G12 from UL, complete sequence
          Length = 236177

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gatatatatacatacaatgg 175
              ||||||||||||||||||||
Sbjct: 189063 gatatatatacatacaatgg 189044
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>gb|AC134592.5| Mus musculus BAC clone RP23-381O3 from chromosome 9, complete sequence
          Length = 184917

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    taaaacaaccctcaatcaac 90
             ||||||||||||||||||||
Sbjct: 14976 taaaacaaccctcaatcaac 14995
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>gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence
          Length = 212660

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    taaaacaaccctcaatcaac 90
             ||||||||||||||||||||
Sbjct: 50951 taaaacaaccctcaatcaac 50932
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>gb|AC117616.8| Mus musculus chromosome 9, clone RP23-111P13, complete sequence
          Length = 242288

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    taaaacaaccctcaatcaac 90
             ||||||||||||||||||||
Sbjct: 51260 taaaacaaccctcaatcaac 51279
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>gb|AF426384.1| Danio rerio deltaD protein gene, complete cds
          Length = 13352

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 148  taactctagatatatatacataca 171
            ||||||| ||||||||||||||||
Sbjct: 8635 taactctggatatatatacataca 8658
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>emb|CR727366.2|CNS0GO6K Tetraodon nigroviridis full-length cDNA
          Length = 1356

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccatcctcttcgtcatcatc 396
           ||||||||||||||||||||
Sbjct: 229 ccatcctcttcgtcatcatc 210
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>gb|AC145920.1| Pan troglodytes BAC clone RP43-10C15 from 7, complete sequence
          Length = 188373

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     aaaacaaccctcaatcaact 91
              ||||||||||||||||||||
Sbjct: 135678 aaaacaaccctcaatcaact 135659
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>emb|BX255923.13| Human DNA sequence from clone RP11-115J7 on chromosome 9 Contains the
             5' end of a pseudogene similar to part of
             phosphoglucomutase 5 (PGRM) (PGM5), a novel gene, the gene
             for a novel forkhead box D4 (FOXD4) protein, the gene for
             a novel protein similar to COBW domain containing 1
             (CBWD1) and four CpG islands, complete sequence
          Length = 179342

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gatatatatacatacaatgg 175
             ||||||||||||||||||||
Sbjct: 69937 gatatatatacatacaatgg 69956
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>emb|BX284632.11| Human DNA sequence from clone RP11-460E7 on chromosome 9 Contains a gene
              similar to COBW-like protein (LOC55871), the FOXD4L4 gene
              for forkhead box D4 like 4, an immunoglobulin kappa
              variable 1-5 (IGKV1-5) pseudogene, three novel pseudogenes,
              a pseudogene similar to part of tripartite motif-containing
              protein family, a pseudogene similar to part of BMS1-like,
              ribosome assembly protein (yeast) (BMS1L) and three CpG
              islands, complete sequence
          Length = 187806

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gatatatatacatacaatgg 175
              ||||||||||||||||||||
Sbjct: 117166 gatatatatacatacaatgg 117147
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>emb|AL512605.13| Human DNA sequence from clone RP11-15J10 on chromosome 9 Contains a
              pseudogene similar to part of COBW doamin family protein,
              the FOXD4L2 gene for forkhead box D4 like 2, an
              immunoglobulin kappa variable 1-5 (IGKV1-5) pseudogene,
              three novel pseudogenes, a pseudogene similar to part of
              cytochrome P450 family protein, a pseudogene similar to
              part of BMS1-like, ribosome assembly protein (yeast)
              (BMS1L) and four CpG islands, complete sequence
          Length = 158187

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gatatatatacatacaatgg 175
              ||||||||||||||||||||
Sbjct: 124439 gatatatatacatacaatgg 124420
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>emb|AL353637.21| Human DNA sequence from clone RP11-159H20 on chromosome 9q21.12-21.32
             Contains a DnaJ (Hsp40) homolog subfamily B member 5
             (DNAJB5) pseudogene, a lysophospholipase II (LYPLA2)
             pseudogene, an eukaryotic translation initiation factor 3
             subunit 1 35kDa (EIF3S1) pseudogene, the gene (possible
             pseudogene) for a novel protein similar to forkhead box B1
             (FOXB1), ATP synthase H+ transporting mitochondrial F0
             complex subunit f isoform 2 (ATP5J2) pseudogene and three
             CpG islands, complete sequence
          Length = 146466

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   tctagatatatatacataca 171
             ||||||||||||||||||||
Sbjct: 47664 tctagatatatatacataca 47683
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>emb|AL353608.20| Human DNA sequence from clone RP11-561O23 on chromosome 9 Contains four
             novel genes, the  CBWD3 gene for COBW domain containing 3,
             the FOXD4L3 gene for forkhead box D4 like 3, the 5' end of
             the PGM5 gene for phosphoglucomutase 5, and four CpG
             islands, complete sequence
          Length = 172991

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gatatatatacatacaatgg 175
             ||||||||||||||||||||
Sbjct: 75549 gatatatatacatacaatgg 75568
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>gb|AC167968.5| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940121D9, complete sequence
          Length = 108830

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 377  ccatcctcttcgtcatcatc 396
            ||||||||||||||||||||
Sbjct: 6217 ccatcctcttcgtcatcatc 6236
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>ref|XM_786036.1| PREDICTED: Strongylocentrotus purpuratus similar to ATP-binding
           cassette, sub-family B (MDR/TAP), member 1 (LOC586248),
           partial mRNA
          Length = 1011

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 catcctcttcgtcatcatca 397
           ||||||||||||||||||||
Sbjct: 637 catcctcttcgtcatcatca 618
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>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
               hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 378     catcctcttcgtcatcatca 397
               ||||||||||||||||||||
Sbjct: 1327449 catcctcttcgtcatcatca 1327430
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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
              hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    catcctcttcgtcatcatca 397
              ||||||||||||||||||||
Sbjct: 825981 catcctcttcgtcatcatca 826000
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>emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project)
          Length = 103534

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   ctcttcgtcatcatcaaata 401
             ||||||||||||||||||||
Sbjct: 34317 ctcttcgtcatcatcaaata 34336
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>emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 in linkage group 13,
              complete sequence
          Length = 136909

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    catcctcttcgtcatcatca 397
              ||||||||||||||||||||
Sbjct: 117019 catcctcttcgtcatcatca 117000
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>gb|AC099484.4| Homo sapiens chromosome 5 clone CTD-2004P1, complete sequence
          Length = 134760

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gatatatatacatacaatgg 175
              ||||||||||||||||||||
Sbjct: 119630 gatatatatacatacaatgg 119649
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>dbj|AB253768.1| Gallus gallus Dicer mRNA for Dicer protein, complete cds
          Length = 6152

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  catcctcttcgtcatcatca 397
            ||||||||||||||||||||
Sbjct: 4291 catcctcttcgtcatcatca 4272
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>gb|AC016884.10| Homo sapiens chromosome , clone RP11-350M7, complete sequence
          Length = 209320

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 342   ctctgtaaaatggaacagctctct 365
             |||||||||||||| |||||||||
Sbjct: 28852 ctctgtaaaatggaccagctctct 28875
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>gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete sequence
          Length = 144609

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 342   ctctgtaaaatggaacagctctct 365
             |||||||||||||| |||||||||
Sbjct: 35674 ctctgtaaaatggaccagctctct 35651
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>gb|AY772740.1| Listonella pelagia phage phiHSIC, complete genome
          Length = 37966

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  accgcatcatcaggcttgaa 248
            ||||||||||||||||||||
Sbjct: 3542 accgcatcatcaggcttgaa 3523
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>gb|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete
             sequence
          Length = 107816

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atatatatacatacaatggt 176
             ||||||||||||||||||||
Sbjct: 63636 atatatatacatacaatggt 63655
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>emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 in linkage group 25,
              complete sequence
          Length = 151830

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    tctagatatatatacataca 171
              ||||||||||||||||||||
Sbjct: 100533 tctagatatatatacataca 100552
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>emb|AL731809.17| Human DNA sequence from clone RP13-354N4 on chromosome 9, complete
              sequence
          Length = 202611

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gatatatatacatacaatgg 175
              ||||||||||||||||||||
Sbjct: 110457 gatatatatacatacaatgg 110476
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>gb|AC006115.1|AC006115 Homo sapiens chromosome 19, BAC CIT-B-470f8 (BC330812), complete
             sequence
          Length = 178367

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atatatatacatacaatggt 176
             ||||||||||||||||||||
Sbjct: 44216 atatatatacatacaatggt 44235
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>emb|AL772250.12| Zebrafish DNA sequence from clone CH211-160M22, complete sequence
          Length = 159758

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tctagatatatatacataca 171
             ||||||||||||||||||||
Sbjct: 20793 tctagatatatatacataca 20774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,829,678
Number of Sequences: 3902068
Number of extensions: 4829678
Number of successful extensions: 138257
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138003
Number of HSP's gapped (non-prelim): 253
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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