>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 317  PLRGPRRA-RHQPQHVDRQPRGQAGYPQHRPHHGRHGEPVLPEREPAL 457
            P+  PR A R  P+++  +PRG+ G    R H     EP+ P + P L
Sbjct: 2175 PMHSPRPASRVSPENIPDKPRGRPGKSPDRGHISEPYEPISPPQAPML 2222

>MS84D_DROME (Q01645) Male-specific sperm protein Mst84Dd|
          Length = 72

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = -1

Query: 414 PWCGRCCGYPAWPRGWRSTCCGWCRARRGP 325
           P CG CCG    P G    CCG C  R GP
Sbjct: 23  PCCGPCCGPCCGPCG---PCCGPCGPRCGP 49

>NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2494

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 317  PLRGPRRA-RHQPQHVDRQPRGQAGYPQHRPHHGRHGEPVLPEREPALRA 463
            P+   R A R  P++V  +PRG+ G    R H     EP+ P + P L A
Sbjct: 2171 PVHNQRPASRVSPENVLDRPRGRPGKSPDRGHISEPYEPISPPQAPLLHA 2220

>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)|
           (3-dehydrosphinganine reductase) (KDS reductase)
          Length = 969

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +2

Query: 332 RRARHQPQHVDRQPRGQA------GYPQHRPHHGRHGEPVLPEREP 451
           ++ +HQ Q   +Q + QA      G PQ  PH  +H  PV P  +P
Sbjct: 666 QQQQHQQQQQHQQQQQQADMLQGLGQPQAHPHQHQHQPPVAPMGQP 711

>BSC1_YEAST (Q12140) Bypass of stop codon protein 1|
          Length = 328

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 210 TLSILTTFSLVDGEPSACSSASSFATPPLATMSSSTLSVGRAAHDTSHSTLTAS 371
           T S +TT S      +  S+ +S +T   +T SSST S    +  T+ S+ T+S
Sbjct: 166 TTSSITTSSTTTSSTTTSSTTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSS 219



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/81 (23%), Positives = 32/81 (39%)
 Frame = +3

Query: 216 SILTTFSLVDGEPSACSSASSFATPPLATMSSSTLSVGRAAHDTSHSTLTASLVARPDXX 395
           S +TT S+     +  S+ +S  T   +T SSST S    +  T+ S+ T+S        
Sbjct: 163 SSITTSSITTSSTTTSSTTTSSTTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTT 222

Query: 396 XXXXXXXXXXXPCSPNASRPS 458
                        + ++S  S
Sbjct: 223 SSSTTSSSTTSSSTTSSSTTS 243

>ILV1_MAIZE (Q41768) Acetolactate synthase 1, chloroplast precursor (EC|
           2.2.1.6) (Acetohydroxy-acid synthase 1)
          Length = 638

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
 Frame = -3

Query: 379 ATRLAVNVLWLVSCAARPTERVLDDMVASG----------GVAKLLALLQADGSPSTKEK 230
           AT L   VL LV  + RP   V     ASG          G+     L+     PS    
Sbjct: 253 ATELLEQVLRLVGESRRPVLYVGGGCAASGEELRRFVELTGIPVTTTLMGLGNFPSDDPL 312

Query: 229 VVRMLRVHGAFWRQYPCIPADL 164
            +RML +HG  +  Y    ADL
Sbjct: 313 SLRMLGMHGTVYANYAVDKADL 334

>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)|
           (Fragment)
          Length = 353

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 329 PRRARHQPQHVDRQPRGQAGYPQHRPHHGRHGEPVLPEREP 451
           P + +H   H   QP  Q  +P H  H   H  P   +  P
Sbjct: 136 PHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSP 176

>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)|
          Length = 508

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 329 PRRARHQPQHVDRQPRGQAGYPQHRPHHGRHGEPVLPEREP 451
           P + +H   H   QP  Q  +P H  H   H  P   +  P
Sbjct: 291 PHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSP 331

>YRU4_CAEEL (Q09350) Hypothetical protein T09B9.4|
          Length = 528

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 341 RHQPQHVDRQPRGQAGYPQHRPHHGRHGEPVLP 439
           +++  H+D   RG++ +  HR H G H EP  P
Sbjct: 10  KNEALHIDASGRGESSFSVHRSHSGGH-EPFAP 41

>POL1_BAYMJ (Q01206) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein 1|
            (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein
            2 (6K2); Viral genome-linked protein (VPg); Nuclear
            inclusion protein A (EC 3.4.22.44) (NI-a) (NIa)
            (NIa-pro); Nuclea
          Length = 2410

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 338  ARHQPQHVDRQPRGQAGYPQHRPHHGRHG 424
            ++H P H+ +   G+ GYP+HR    + G
Sbjct: 1311 SQHDPDHLKQNGSGKIGYPEHRGQFRQEG 1339

>MUTB_PORGI (Q59677) Methylmalonyl-CoA mutase large subunit (EC 5.4.99.2)|
           (MCM-alpha)
          Length = 715

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 60  QFSLYQTVIHPPASLYTCRSSTQILDHLRNLR*SLRSAGMQGYCLQNAPCTLSILTTFSL 239
           +F +  T I+PP   ++ R    I ++         S  + GY +Q A  T  I   ++L
Sbjct: 198 EFMVRNTYIYPPE--FSMRIIADIFEYTSQNMPKFNSISISGYHMQEAGATADIEMAYTL 255

Query: 240 VDG 248
            DG
Sbjct: 256 ADG 258

>RAG1_RABIT (P34088) V(D)J recombination-activating protein 1 (RAG-1)|
          Length = 1042

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -3

Query: 229 VVRMLRVHGAFWR--QYPCIPADLKDYLKFLK*SSICVLD 116
           ++R L+V G++    QYPC P DL+  +K    S +C+L+
Sbjct: 316 ILRCLKVMGSYCPSCQYPCFPTDLESPVK----SFLCILN 351

>ILV1_ORYSA (Q6K2E8) Acetolactate synthase 1, chloroplast precursor (EC|
           2.2.1.6) (Acetohydroxy-acid synthase 1)
          Length = 644

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
 Frame = -3

Query: 379 ATRLAVNVLWLVSCAARPTERVLDDMVASG----------GVAKLLALLQADGSPSTKEK 230
           AT L   VL LV  + RP   V     ASG          G+     L+     PS    
Sbjct: 259 ATELLEQVLRLVGESRRPILYVGGGCSASGDELRWFVELTGIPVTTTLMGLGNFPSDDPL 318

Query: 229 VVRMLRVHGAFWRQYPCIPADL 164
            +RML +HG  +  Y    ADL
Sbjct: 319 SLRMLGMHGTVYANYAVDKADL 340

>HMEN_DROME (P02836) Segmentation polarity homeobox protein engrailed|
          Length = 552

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 249 EPSACSSASSFATPPLATMSSSTLSVGRAAHDTSHSTLTASLVA 380
           +P   SSASS A+PP A+ +S+  S    A  +S S+   S  A
Sbjct: 316 QPPLSSSASSLASPPPASNASTISSTSSVATSSSSSSSGCSSAA 359

>ILV2_MAIZE (Q41769) Acetolactate synthase 2, chloroplast precursor (EC|
           2.2.1.6) (Acetohydroxy-acid synthase 2)
          Length = 638

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
 Frame = -3

Query: 379 ATRLAVNVLWLVSCAARPTERVLDDMVASG----------GVAKLLALLQADGSPSTKEK 230
           AT     VL LV  + RP   V     ASG          G+     L+     PS    
Sbjct: 253 ATEFLEQVLRLVGESRRPVLYVGGGCAASGEELCRFVELTGIPVTTTLMGLGNFPSDDPL 312

Query: 229 VVRMLRVHGAFWRQYPCIPADL 164
            +RML +HG  +  Y    ADL
Sbjct: 313 SLRMLGMHGTVYANYAVDKADL 334

>Y4UE_RHISN (Q53198) Putative transposase y4uE|
          Length = 359

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
 Frame = +2

Query: 329 PRRARHQPQHVDRQPRGQ-----AGYPQHRPHHGRHG 424
           PR   H P H  RQP  Q     AG+P  +PH  R G
Sbjct: 316 PRHYAHCP-HPPRQPAAQTGASSAGWPDRQPHRNRAG 351

>MUTB_RHIME (O86028) Methylmalonyl-CoA mutase (EC 5.4.99.2) (MCM)|
          Length = 712

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 60  QFSLYQTVIHPPASLYTCRSSTQILDHLRNLR*SLRSAGMQGYCLQNAPCTLSILTTFSL 239
           +F +  T I+PP    + R    I+++         S  + GY +Q A  TL     F+L
Sbjct: 191 EFMVRNTYIYPPEP--SMRIVADIIEYTAKEMPKFNSISISGYHMQEAGATLVQELAFTL 248

Query: 240 VDG 248
            DG
Sbjct: 249 ADG 251

>ANGP2_MOUSE (O35608) Angiopoietin-2 precursor (ANG-2)|
          Length = 496

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 147 NLR*SLRSAGMQGYCLQNAPCTLSILTTFSLVDGEPSACSSASS 278
           N R S+ S G + Y +QN PC+ + L        E  +C S+SS
Sbjct: 21  NFRKSVDSTGRRQYQVQNGPCSYTFLLP------ETDSCRSSSS 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,232,657
Number of Sequences: 219361
Number of extensions: 983463
Number of successful extensions: 4687
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4667
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)