Clone Name | rbart22b08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 211 cctactgacaaactctactatgtacgag 238 |||||||||||||||||| ||||||||| Sbjct: 20584002 cctactgacaaactctacaatgtacgag 20584029
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1254_E07 Length = 124028 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 211 cctactgacaaactctactatgtacgag 238 |||||||||||||||||| ||||||||| Sbjct: 101649 cctactgacaaactctacaatgtacgag 101676
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515E01 Length = 140063 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 211 cctactgacaaactctactatgtacgag 238 |||||||||||||||||| ||||||||| Sbjct: 49660 cctactgacaaactctacaatgtacgag 49687
>dbj|AK067728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116P12, full insert sequence Length = 2399 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 211 cctactgacaaactctactatgtacgag 238 |||||||||||||||||| ||||||||| Sbjct: 2202 cctactgacaaactctacaatgtacgag 2175
>dbj|AK067314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102G21, full insert sequence Length = 2555 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 211 cctactgacaaactctactatgtacgag 238 |||||||||||||||||| ||||||||| Sbjct: 2332 cctactgacaaactctacaatgtacgag 2305
>gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome 13, complete sequence Length = 209819 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 agcacacaaaagtatgtcttagg 119 ||||||||||||||||||||||| Sbjct: 170933 agcacacaaaagtatgtcttagg 170911
>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence Length = 192299 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 agcacacaaaagtatgtcttagg 119 ||||||||||||||||||||||| Sbjct: 79250 agcacacaaaagtatgtcttagg 79228
>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete sequence Length = 219145 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 agcacacaaaagtatgtcttagg 119 ||||||||||||||||||||||| Sbjct: 45961 agcacacaaaagtatgtcttagg 45939
>gb|AC147062.4| Pan troglodytes BAC clone RP43-157A2 from 7, complete sequence Length = 189940 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ctgacacctttgcaaccaca 149 |||||||||||||||||||| Sbjct: 127797 ctgacacctttgcaaccaca 127778
>gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosome ul, complete sequence Length = 196838 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 acgacatcattttgctgagg 56 |||||||||||||||||||| Sbjct: 153421 acgacatcattttgctgagg 153440 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,618,016 Number of Sequences: 3902068 Number of extensions: 3618016 Number of successful extensions: 45690 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45676 Number of HSP's gapped (non-prelim): 14 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)