ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
2dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
3dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
4dbj|AK067728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
5dbj|AK067314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
6gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome... 46 0.077
7gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosom... 46 0.077
8emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chro... 46 0.077
9gb|AC147062.4| Pan troglodytes BAC clone RP43-157A2 from 7, comp... 40 4.7
10gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosom... 40 4.7

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 211      cctactgacaaactctactatgtacgag 238
                |||||||||||||||||| |||||||||
Sbjct: 20584002 cctactgacaaactctacaatgtacgag 20584029



to top

>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1254_E07
          Length = 124028

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 211    cctactgacaaactctactatgtacgag 238
              |||||||||||||||||| |||||||||
Sbjct: 101649 cctactgacaaactctacaatgtacgag 101676



to top

>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0515E01
          Length = 140063

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 211   cctactgacaaactctactatgtacgag 238
             |||||||||||||||||| |||||||||
Sbjct: 49660 cctactgacaaactctacaatgtacgag 49687



to top

>dbj|AK067728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116P12, full
            insert sequence
          Length = 2399

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 211  cctactgacaaactctactatgtacgag 238
            |||||||||||||||||| |||||||||
Sbjct: 2202 cctactgacaaactctacaatgtacgag 2175



to top

>dbj|AK067314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102G21, full
            insert sequence
          Length = 2555

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 211  cctactgacaaactctactatgtacgag 238
            |||||||||||||||||| |||||||||
Sbjct: 2332 cctactgacaaactctacaatgtacgag 2305



to top

>gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome 13, complete sequence
          Length = 209819

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 97     agcacacaaaagtatgtcttagg 119
              |||||||||||||||||||||||
Sbjct: 170933 agcacacaaaagtatgtcttagg 170911



to top

>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete
             sequence
          Length = 192299

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 97    agcacacaaaagtatgtcttagg 119
             |||||||||||||||||||||||
Sbjct: 79250 agcacacaaaagtatgtcttagg 79228



to top

>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete
             sequence
          Length = 219145

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 97    agcacacaaaagtatgtcttagg 119
             |||||||||||||||||||||||
Sbjct: 45961 agcacacaaaagtatgtcttagg 45939



to top

>gb|AC147062.4| Pan troglodytes BAC clone RP43-157A2 from 7, complete sequence
          Length = 189940

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    ctgacacctttgcaaccaca 149
              ||||||||||||||||||||
Sbjct: 127797 ctgacacctttgcaaccaca 127778



to top

>gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosome ul, complete sequence
          Length = 196838

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     acgacatcattttgctgagg 56
              ||||||||||||||||||||
Sbjct: 153421 acgacatcattttgctgagg 153440


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,618,016
Number of Sequences: 3902068
Number of extensions: 3618016
Number of successful extensions: 45690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45676
Number of HSP's gapped (non-prelim): 14
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top