ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB206815.1| Hordeum vulgare IDI4 mRNA for putative asparate ... 678 0.0
2gb|AY111191.1| Zea mays CL10409_1 mRNA sequence 210 3e-51
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
4dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
5dbj|AK120288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
6dbj|AK119212.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
7gb|BC041113.1| Mus musculus DNA segment, Chr 10, ERATO Doi 610, ... 46 0.11
8gb|AC130675.7| Mus musculus chromosome 8, clone RP23-167D18, com... 46 0.11
9dbj|AK158684.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 46 0.11
10dbj|AK010452.1| Mus musculus ES cells cDNA, RIKEN full-length en... 46 0.11
11gb|BC054833.1| Mus musculus DNA segment, Chr 10, ERATO Doi 610, ... 46 0.11
12gb|AF487515.1| Mus musculus RAC/CDC42 exchange factor mRNA, comp... 46 0.11
13ref|NM_028027.1| Mus musculus DNA segment, Chr 10, ERATO Doi 610... 46 0.11
14ref|XM_509168.1| PREDICTED: Pan troglodytes similar to RAC/CDC42... 42 1.8
15gb|AC121511.12| Mus musculus chromosome 18, clone RP24-389K16, c... 42 1.8
16gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.8
17gb|BC061879.1| Rattus norvegicus RAC/CDC42 exchange factor, mRNA... 42 1.8
18gb|BC012860.1| Homo sapiens RAC/CDC42 exchange factor, transcrip... 42 1.8
19gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.8
20gb|AF487514.2| Homo sapiens RAC/CDC42/Rho exchange factor GEFT m... 42 1.8
21emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.8
22emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.8
23gb|BC047559.1| Homo sapiens RAC/CDC42 exchange factor, transcrip... 42 1.8
24ref|NM_199395.1| Rattus norvegicus RAC/CDC42 exchange factor (Ge... 42 1.8
25emb|CR599416.1| full-length cDNA clone CS0DN002YN19 of Adult bra... 42 1.8
26dbj|AK057416.1| Homo sapiens cDNA FLJ32854 fis, clone TESTI20034... 42 1.8
27dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
28ref|NM_182947.1| Homo sapiens RAC/CDC42 exchange factor (GEFT), ... 42 1.8
29ref|NM_133483.1| Homo sapiens RAC/CDC42 exchange factor (GEFT), ... 42 1.8
30dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
31gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 7.0
32gb|AE010409.1| Methanopyrus kandleri AV19 section 108 of 157 of ... 40 7.0
33gb|AC167720.2| Mus musculus BAC clone RP24-216G15 from chromosom... 40 7.0
34gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 7.0
35gb|BT018830.1| Zea mays clone EL01N0551C10.d mRNA sequence 40 7.0
36gb|BT018640.1| Zea mays clone EL01N0504G05.d mRNA sequence 40 7.0
37gb|AC149370.2| Phakopsora pachyrhizi clone JGIAFNA-53G18, comple... 40 7.0
38gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.0
39gb|AC164649.4| Mus musculus BAC clone RP23-437D10 from chromosom... 40 7.0
40gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 7.0
41ref|XM_367295.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 7.0
42ref|XM_950804.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.0
43ref|XM_327522.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.0
44gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 7.0
45gb|AC139377.4| Mus musculus chromosome 5 clone RP24-291G12, comp... 40 7.0
46gb|AC140042.19| Mus musculus chromosome 5, clone RP23-437D10, co... 40 7.0
47gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 7.0
48emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chr... 40 7.0
49gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.0
50emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.0
51emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A stra... 40 7.0
52gb|AC159538.20| Medicago truncatula clone mth2-48f16, complete s... 40 7.0
53ref|XM_571941.1| Cryptococcus neoformans var. neoformans JEC21 c... 40 7.0
54gb|AF399915.1|AF399915 Sorghum bicolor phosphoenolpyruvate carbo... 40 7.0
55dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
56dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.0
57gb|AY911415.1| Zea mays phosphoenolpyruvate carboxylase kinase 3... 40 7.0
58gb|AY911414.1| Zea mays phosphoenolpyruvate carboxylase kinase 2... 40 7.0
59gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 7.0
60gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 40 7.0
61gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
62emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.0 
>dbj|AB206815.1| Hordeum vulgare IDI4 mRNA for putative asparate aminotransferase,
            complete cds
          Length = 1401

 Score =  678 bits (342), Expect = 0.0
 Identities = 366/374 (97%)
 Strand = Plus / Minus

                                                                        
Query: 144  cccctcaatcatttcttcctgagcttggccttcatccggtccaccgccgccctcagcgtg 203
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 1272 cccctcaatcatttcttcctgagcttggccttcatcctgtccaccgccgcccttagcgtg 1213

                                                                        
Query: 204  tcgtcgtccttgcagaaggtgaacctcaccaggtccttcccgtcctccgggttcaggtag 263
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1212 tcgtcgtccttgcagaaggtgaacctcaccaggttcttcccgtcctccgggttcaggtag 1153

                                                                        
Query: 264  aacacgctcggcgggatggccacgacgccgacctcgcggatcaagtactcgcagaactcg 323
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 aacacgcttggcgggatggccacgacgccgacctcgcggatcaagtactcgcagaactcg 1093

                                                                        
Query: 324  acgtcgttgtcgaacccgaacggggtgtggtcgaccatgacgaagtaggtcccgctcgaa 383
            |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1092 acgtcgttgtcgaacccgaacggggtgtggtcgaccatgatgaagtaggttccgctcgaa 1033

                                                                        
Query: 384  gggtagacgatgaagcccgccgccttgagcccgtccaccagcagcgctttctttgcgccg 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 gggtagacgatgaagcccgccgccttgagcccgtccaccagcagcgctttctttgcgccg 973

                                                                        
Query: 444  tagtccctcttcagctcctcaaagtagctgtccggtgctctcaaggccgccgctgctgct 503
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 972  tagtccctcttcagctcctcaaagtagctgtccggtgctctcagggccgccgccgctgct 913

                          
Query: 504  gattgcatcggcgt 517
            ||||||||||||||
Sbjct: 912  gattgcatcggcgt 899



 Score =  210 bits (106), Expect = 3e-51
 Identities = 125/130 (96%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agtagataactgctgctagaaaaaagtgttacatgcatcgcaccggaatgcagatcagat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 agtagataactgctgctagaaaaaagtgttacatgcatcgcaccggaatgcagatcagat 1328

                                                                        
Query: 61   cagatcgagcaggtctttattcaccaaacaatcatcaacggctacacggaaatcgccccc 120
            ||||||||||||||||||||||||||| ||||||||||||||||||| ||  ||| ||||
Sbjct: 1327 cagatcgagcaggtctttattcaccaaccaatcatcaacggctacacagatgtcg-cccc 1269

                      
Query: 121  tcaatcattt 130
            ||||||||||
Sbjct: 1268 tcaatcattt 1259
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>gb|AY111191.1| Zea mays CL10409_1 mRNA sequence
          Length = 646

 Score =  210 bits (106), Expect = 3e-51
 Identities = 262/314 (83%)
 Strand = Plus / Plus

                                                                       
Query: 165 agcttggccttcatccggtccaccgccgccctcagcgtgtcgtcgtccttgcagaaggtg 224
           ||||| ||||||| ||  || ||||| |||| ||||||| | |||||||||| |||||||
Sbjct: 328 agcttcgccttcaacctctcgaccgcggcccgcagcgtgccttcgtccttgctgaaggtg 387

                                                                       
Query: 225 aacctcaccaggtccttcccgtcctccgggttcaggtagaacacgctcggcgggatggcc 284
           ||||||||||  | ||| || || || ||||  |||||||||||||| ||||| || || 
Sbjct: 388 aacctcaccaatttctttccctcttcggggtcgaggtagaacacgctgggcggtatagcg 447

                                                                       
Query: 285 acgacgccgacctcgcggatcaagtactcgcagaactcgacgtcgttgtcgaacccgaac 344
             ||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 448 cagacgccgacttcgcggatcaagtactcgcagaactctacgtcgctgtcgaaaccgaac 507

                                                                       
Query: 345 ggggtgtggtcgaccatgacgaagtaggtcccgctcgaagggtagacgatgaagcccgcc 404
           ||||||||||||||||||| | |||| ||||| ||||| |||||||||||||| || || 
Sbjct: 508 ggggtgtggtcgaccatgatgtagtatgtcccactcgatgggtagacgatgaaccctgcg 567

                                                                       
Query: 405 gccttgagcccgtccaccagcagcgctttctttgcgccgtagtccctcttcagctcctca 464
           || | ||| || |||| ||| |  || ||||| |||| | |||||||||||||||| || 
Sbjct: 568 gcttcgagtccttccagcaggatagccttcttcgcgctgcagtccctcttcagctcgtcg 627

                         
Query: 465 aagtagctgtccgg 478
            |||||||||||||
Sbjct: 628 tagtagctgtccgg 641
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  168 bits (85), Expect = 1e-38
 Identities = 292/361 (80%)
 Strand = Plus / Minus

                                                                            
Query: 151      atcatttcttcctgagcttggccttcatccggtccaccgccgccctcagcgtgtcgtcgt 210
                ||||||| ||||||||||| | ||||||||  || ||||| || |||||||| || || |
Sbjct: 16973592 atcattttttcctgagctttgtcttcatcctctcaaccgcggctctcagcgtctcatcat 16973533

                                                                            
Query: 211      ccttgcagaaggtgaacctcaccaggtccttcccgtcctccgggttcaggtagaacacgc 270
                ||||||| |||||||||||||||| || |||||| ||||| ||||| || || || || |
Sbjct: 16973532 ccttgcaaaaggtgaacctcaccaagttcttcccatcctcagggttgagataaaatacac 16973473

                                                                            
Query: 271      tcggcgggatggccacgacgccgacctcgcggatcaagtactcgcagaactcgacgtcgt 330
                | || || ||||| || || ||||| ||||| ||||| |||||||||||||| |  || |
Sbjct: 16973472 taggtggtatggcgacaacaccgacttcgcgaatcaaatactcgcagaactcaatatcat 16973413

                                                                            
Query: 331      tgtcgaacccgaacggggtgtggtcgaccatgacgaagtaggtcccgctcgaagggtaga 390
                ||||||| || || |||||||||||||||||||||||||| || || || ||||| ||||
Sbjct: 16973412 tgtcgaaaccaaatggggtgtggtcgaccatgacgaagtatgttccacttgaaggataga 16973353

                                                                            
Query: 391      cgatgaagcccgccgccttgagcccgtccaccagcagcgctttctttgcgccgtagtccc 450
                | ||||| || ||  ||||||| ||||  || ||||  || ||||| || || || ||||
Sbjct: 16973352 caatgaaacctgcatccttgagtccgttgactagcaatgccttcttagctccataatccc 16973293

                                                                            
Query: 451      tcttcagctcctcaaagtagctgtccggtgctctcaaggccgccgctgctgctgattgca 510
                || |||| |||||| ||||||| || ||||||||||  || || ||||| |||| |||||
Sbjct: 16973292 tcctcagttcctcatagtagctatctggtgctctcagagctgcagctgcagctgcttgca 16973233

                 
Query: 511      t 511
                |
Sbjct: 16973232 t 16973232
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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0488D02
          Length = 154537

 Score =  168 bits (85), Expect = 1e-38
 Identities = 292/361 (80%)
 Strand = Plus / Minus

                                                                          
Query: 151    atcatttcttcctgagcttggccttcatccggtccaccgccgccctcagcgtgtcgtcgt 210
              ||||||| ||||||||||| | ||||||||  || ||||| || |||||||| || || |
Sbjct: 103405 atcattttttcctgagctttgtcttcatcctctcaaccgcggctctcagcgtctcatcat 103346

                                                                          
Query: 211    ccttgcagaaggtgaacctcaccaggtccttcccgtcctccgggttcaggtagaacacgc 270
              ||||||| |||||||||||||||| || |||||| ||||| ||||| || || || || |
Sbjct: 103345 ccttgcaaaaggtgaacctcaccaagttcttcccatcctcagggttgagataaaatacac 103286

                                                                          
Query: 271    tcggcgggatggccacgacgccgacctcgcggatcaagtactcgcagaactcgacgtcgt 330
              | || || ||||| || || ||||| ||||| ||||| |||||||||||||| |  || |
Sbjct: 103285 taggtggtatggcgacaacaccgacttcgcgaatcaaatactcgcagaactcaatatcat 103226

                                                                          
Query: 331    tgtcgaacccgaacggggtgtggtcgaccatgacgaagtaggtcccgctcgaagggtaga 390
              ||||||| || || |||||||||||||||||||||||||| || || || ||||| ||||
Sbjct: 103225 tgtcgaaaccaaatggggtgtggtcgaccatgacgaagtatgttccacttgaaggataga 103166

                                                                          
Query: 391    cgatgaagcccgccgccttgagcccgtccaccagcagcgctttctttgcgccgtagtccc 450
              | ||||| || ||  ||||||| ||||  || ||||  || ||||| || || || ||||
Sbjct: 103165 caatgaaacctgcatccttgagtccgttgactagcaatgccttcttagctccataatccc 103106

                                                                          
Query: 451    tcttcagctcctcaaagtagctgtccggtgctctcaaggccgccgctgctgctgattgca 510
              || |||| |||||| ||||||| || ||||||||||  || || ||||| |||| |||||
Sbjct: 103105 tcctcagttcctcatagtagctatctggtgctctcagagctgcagctgcagctgcttgca 103046

               
Query: 511    t 511
              |
Sbjct: 103045 t 103045
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>dbj|AK120288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C15, full
            insert sequence
          Length = 1790

 Score =  168 bits (85), Expect = 1e-38
 Identities = 292/361 (80%)
 Strand = Plus / Minus

                                                                        
Query: 151  atcatttcttcctgagcttggccttcatccggtccaccgccgccctcagcgtgtcgtcgt 210
            ||||||| ||||||||||| | ||||||||  || ||||| || |||||||| || || |
Sbjct: 1487 atcattttttcctgagctttgtcttcatcctctcaaccgcggctctcagcgtctcatcat 1428

                                                                        
Query: 211  ccttgcagaaggtgaacctcaccaggtccttcccgtcctccgggttcaggtagaacacgc 270
            ||||||| |||||||||||||||| || |||||| ||||| ||||| || || || || |
Sbjct: 1427 ccttgcaaaaggtgaacctcaccaagttcttcccatcctcagggttgagataaaatacac 1368

                                                                        
Query: 271  tcggcgggatggccacgacgccgacctcgcggatcaagtactcgcagaactcgacgtcgt 330
            | || || ||||| || || ||||| ||||| ||||| |||||||||||||| |  || |
Sbjct: 1367 taggtggtatggcgacaacaccgacttcgcgaatcaaatactcgcagaactcaatatcat 1308

                                                                        
Query: 331  tgtcgaacccgaacggggtgtggtcgaccatgacgaagtaggtcccgctcgaagggtaga 390
            ||||||| || || |||||||||||||||||||||||||| || || || ||||| ||||
Sbjct: 1307 tgtcgaaaccaaatggggtgtggtcgaccatgacgaagtatgttccacttgaaggataga 1248

                                                                        
Query: 391  cgatgaagcccgccgccttgagcccgtccaccagcagcgctttctttgcgccgtagtccc 450
            | ||||| || ||  ||||||| ||||  || ||||  || ||||| || || || ||||
Sbjct: 1247 caatgaaacctgcatccttgagtccgttgactagcaatgccttcttagctccataatccc 1188

                                                                        
Query: 451  tcttcagctcctcaaagtagctgtccggtgctctcaaggccgccgctgctgctgattgca 510
            || |||| |||||| ||||||| || ||||||||||  || || ||||| |||| |||||
Sbjct: 1187 tcctcagttcctcatagtagctatctggtgctctcagagctgcagctgcagctgcttgca 1128

             
Query: 511  t 511
            |
Sbjct: 1127 t 1127
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>dbj|AK119212.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E06, full
            insert sequence
          Length = 1543

 Score =  168 bits (85), Expect = 1e-38
 Identities = 292/361 (80%)
 Strand = Plus / Minus

                                                                        
Query: 151  atcatttcttcctgagcttggccttcatccggtccaccgccgccctcagcgtgtcgtcgt 210
            ||||||| ||||||||||| | ||||||||  || ||||| || |||||||| || || |
Sbjct: 1370 atcattttttcctgagctttgtcttcatcctctcaaccgcggctctcagcgtctcatcat 1311

                                                                        
Query: 211  ccttgcagaaggtgaacctcaccaggtccttcccgtcctccgggttcaggtagaacacgc 270
            ||||||| |||||||||||||||| || |||||| ||||| ||||| || || || || |
Sbjct: 1310 ccttgcaaaaggtgaacctcaccaagttcttcccatcctcagggttgagataaaatacac 1251

                                                                        
Query: 271  tcggcgggatggccacgacgccgacctcgcggatcaagtactcgcagaactcgacgtcgt 330
            | || || ||||| || || ||||| ||||| ||||| |||||||||||||| |  || |
Sbjct: 1250 taggtggtatggcgacaacaccgacttcgcgaatcaaatactcgcagaactcaatatcat 1191

                                                                        
Query: 331  tgtcgaacccgaacggggtgtggtcgaccatgacgaagtaggtcccgctcgaagggtaga 390
            ||||||| || || |||||||||||||||||||||||||| || || || ||||| ||||
Sbjct: 1190 tgtcgaaaccaaatggggtgtggtcgaccatgacgaagtatgttccacttgaaggataga 1131

                                                                        
Query: 391  cgatgaagcccgccgccttgagcccgtccaccagcagcgctttctttgcgccgtagtccc 450
            | ||||| || ||  ||||||| ||||  || ||||  || ||||| || || || ||||
Sbjct: 1130 caatgaaacctgcatccttgagtccgttgactagcaatgccttcttagctccataatccc 1071

                                                                        
Query: 451  tcttcagctcctcaaagtagctgtccggtgctctcaaggccgccgctgctgctgattgca 510
            || |||| |||||| ||||||| || ||||||||||  || || ||||| |||| |||||
Sbjct: 1070 tcctcagttcctcatagtagctatctggtgctctcagagctgcagctgcagctgcttgca 1011

             
Query: 511  t 511
            |
Sbjct: 1010 t 1010
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>gb|BC041113.1| Mus musculus DNA segment, Chr 10, ERATO Doi 610, expressed, mRNA
            (cDNA clone IMAGE:4187277), with apparent retained intron
          Length = 2596

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 454  tcagctcctcaaagtagctgtcc 476
            |||||||||||||||||||||||
Sbjct: 1343 tcagctcctcaaagtagctgtcc 1321
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>gb|AC130675.7| Mus musculus chromosome 8, clone RP23-167D18, complete sequence
          Length = 193579

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 16     ctagaaaaaagtgttacatgcat 38
              |||||||||||||||||||||||
Sbjct: 129913 ctagaaaaaagtgttacatgcat 129891
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>dbj|AK158684.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K230053K16 product:2410008H17Rik protein
           (RAC/CDC42 exchange factor) homolog [Mus musculus], full
           insert sequence
          Length = 2189

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 454 tcagctcctcaaagtagctgtcc 476
           |||||||||||||||||||||||
Sbjct: 967 tcagctcctcaaagtagctgtcc 945
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>dbj|AK010452.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410008H17 product:weakly similar to TRIPLE
           FUNCTIONAL DOMAIN PROTEIN (PTPRF INTERACTING PROTEIN)
           [Homo sapiens], full insert sequence
          Length = 2219

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 454 tcagctcctcaaagtagctgtcc 476
           |||||||||||||||||||||||
Sbjct: 995 tcagctcctcaaagtagctgtcc 973
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>gb|BC054833.1| Mus musculus DNA segment, Chr 10, ERATO Doi 610, expressed, mRNA
           (cDNA clone MGC:62781 IMAGE:6439728), complete cds
          Length = 1732

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 454 tcagctcctcaaagtagctgtcc 476
           |||||||||||||||||||||||
Sbjct: 251 tcagctcctcaaagtagctgtcc 229
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>gb|AF487515.1| Mus musculus RAC/CDC42 exchange factor mRNA, complete cds
          Length = 2209

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 454 tcagctcctcaaagtagctgtcc 476
           |||||||||||||||||||||||
Sbjct: 995 tcagctcctcaaagtagctgtcc 973
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>ref|NM_028027.1| Mus musculus DNA segment, Chr 10, ERATO Doi 610, expressed
           (D10Ertd610e), mRNA
          Length = 2219

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 454 tcagctcctcaaagtagctgtcc 476
           |||||||||||||||||||||||
Sbjct: 995 tcagctcctcaaagtagctgtcc 973
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>ref|XM_509168.1| PREDICTED: Pan troglodytes similar to RAC/CDC42 exchange factor
           isoform 2 (LOC452020), mRNA
          Length = 1817

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 agctcctcaaagtagctgtcc 476
           |||||||||||||||||||||
Sbjct: 118 agctcctcaaagtagctgtcc 98
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>gb|AC121511.12| Mus musculus chromosome 18, clone RP24-389K16, complete sequence
          Length = 151000

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   cctcaatcatttcttcctgag 166
             |||||||||||||||||||||
Sbjct: 88164 cctcaatcatttcttcctgag 88144
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 402     gccgccttgagcccgtccaccagcagcgc 430
               |||||||| ||||||||||||||| ||||
Sbjct: 3383611 gccgccttaagcccgtccaccagcggcgc 3383639
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>gb|BC061879.1| Rattus norvegicus RAC/CDC42 exchange factor, mRNA (cDNA clone
           MGC:72605 IMAGE:5599277), complete cds
          Length = 2118

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 agctcctcaaagtagctgtcc 476
           |||||||||||||||||||||
Sbjct: 962 agctcctcaaagtagctgtcc 942
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>gb|BC012860.1| Homo sapiens RAC/CDC42 exchange factor, transcript variant 2, mRNA
           (cDNA clone MGC:18298 IMAGE:4179764), complete cds
          Length = 2166

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 agctcctcaaagtagctgtcc 476
           |||||||||||||||||||||
Sbjct: 833 agctcctcaaagtagctgtcc 813
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 404     cgccttgagcccgtccaccag 424
               |||||||||||||||||||||
Sbjct: 3342492 cgccttgagcccgtccaccag 3342472
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>gb|AF487514.2| Homo sapiens RAC/CDC42/Rho exchange factor GEFT mRNA, complete cds
          Length = 2567

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  agctcctcaaagtagctgtcc 476
            |||||||||||||||||||||
Sbjct: 1281 agctcctcaaagtagctgtcc 1261
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>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 402    gccgccttgagcccgtccaccagcagcgc 430
              |||||||| ||||||||||||||| ||||
Sbjct: 268837 gccgccttaagcccgtccaccagcggcgc 268865
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>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14
          Length = 318050

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 402    gccgccttgagcccgtccaccagcagcgc 430
              |||||||| ||||||||||||||| ||||
Sbjct: 219434 gccgccttaagcccgtccaccagcggcgc 219462
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>gb|BC047559.1| Homo sapiens RAC/CDC42 exchange factor, transcript variant 1, mRNA
            (cDNA clone MGC:44765 IMAGE:5311038), complete cds
          Length = 2567

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  agctcctcaaagtagctgtcc 476
            |||||||||||||||||||||
Sbjct: 1281 agctcctcaaagtagctgtcc 1261
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>ref|NM_199395.1| Rattus norvegicus RAC/CDC42 exchange factor (Geft), mRNA
          Length = 2118

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 agctcctcaaagtagctgtcc 476
           |||||||||||||||||||||
Sbjct: 962 agctcctcaaagtagctgtcc 942
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>emb|CR599416.1| full-length cDNA clone CS0DN002YN19 of Adult brain of Homo sapiens
           (human)
          Length = 1656

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 agctcctcaaagtagctgtcc 476
           |||||||||||||||||||||
Sbjct: 459 agctcctcaaagtagctgtcc 439
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>dbj|AK057416.1| Homo sapiens cDNA FLJ32854 fis, clone TESTI2003498, moderately
           similar to TRIPLE FUNCTIONAL DOMAIN PROTEIN
          Length = 1640

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 agctcctcaaagtagctgtcc 476
           |||||||||||||||||||||
Sbjct: 707 agctcctcaaagtagctgtcc 687
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 377      gctcgaagggtagacgatgaa 397
                |||||||||||||||||||||
Sbjct: 20783474 gctcgaagggtagacgatgaa 20783494
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>ref|NM_182947.1| Homo sapiens RAC/CDC42 exchange factor (GEFT), transcript variant 1,
            mRNA
          Length = 2567

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  agctcctcaaagtagctgtcc 476
            |||||||||||||||||||||
Sbjct: 1281 agctcctcaaagtagctgtcc 1261
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>ref|NM_133483.1| Homo sapiens RAC/CDC42 exchange factor (GEFT), transcript variant
           2, mRNA
          Length = 2166

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 agctcctcaaagtagctgtcc 476
           |||||||||||||||||||||
Sbjct: 833 agctcctcaaagtagctgtcc 813
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>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0458E11
          Length = 148798

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 377   gctcgaagggtagacgatgaa 397
             |||||||||||||||||||||
Sbjct: 38149 gctcgaagggtagacgatgaa 38169
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 392     gatgaagcccgccgccttga 411
               ||||||||||||||||||||
Sbjct: 2944360 gatgaagcccgccgccttga 2944379
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>gb|AE010409.1| Methanopyrus kandleri AV19 section 108 of 157 of the complete genome
          Length = 10408

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 440  gccgtagtccctcttcagctcctc 463
            |||||| |||||||||||||||||
Sbjct: 2934 gccgtactccctcttcagctcctc 2911
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>gb|AC167720.2| Mus musculus BAC clone RP24-216G15 from chromosome 16, complete sequence
          Length = 172721

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 156    ttcttcctgagcttggccttcatc 179
              ||||||||| ||||||||||||||
Sbjct: 120677 ttcttcctgggcttggccttcatc 120654
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 271    tcggcgggatggccacgacgccga 294
              |||||||||||||| |||||||||
Sbjct: 841195 tcggcgggatggccgcgacgccga 841218
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>gb|BT018830.1| Zea mays clone EL01N0551C10.d mRNA sequence
          Length = 1363

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 cgtagtccctcttcagctcc 461
           ||||||||||||||||||||
Sbjct: 51  cgtagtccctcttcagctcc 32
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>gb|BT018640.1| Zea mays clone EL01N0504G05.d mRNA sequence
          Length = 1389

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 cgtagtccctcttcagctcc 461
           ||||||||||||||||||||
Sbjct: 41  cgtagtccctcttcagctcc 22
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>gb|AC149370.2| Phakopsora pachyrhizi clone JGIAFNA-53G18, complete sequence
          Length = 28008

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   ccctcttcagctcctcaaag 467
             ||||||||||||||||||||
Sbjct: 14249 ccctcttcagctcctcaaag 14230
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
              sequence
          Length = 1347793

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 484    tcaaggccgccgctgctgct 503
              ||||||||||||||||||||
Sbjct: 772467 tcaaggccgccgctgctgct 772448
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>gb|AC164649.4| Mus musculus BAC clone RP23-437D10 from chromosome 5, complete sequence
          Length = 215766

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 50     gcagatcagatcagatcgagcagg 73
              |||||||||| |||||||||||||
Sbjct: 185774 gcagatcagagcagatcgagcagg 185797
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 271     tcggcgggatggccacgacgccga 294
               |||||||||||||| |||||||||
Sbjct: 2139810 tcggcgggatggccgcgacgccga 2139787
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>ref|XM_367295.1| Magnaporthe grisea 70-15 hypothetical protein (MG07220.4) partial
            mRNA
          Length = 1857

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  tcgtccttgcagaaggtgaa 226
            ||||||||||||||||||||
Sbjct: 1043 tcgtccttgcagaaggtgaa 1024
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>ref|XM_950804.1| Neurospora crassa OR74A hypothetical protein (NCU07237.1) partial
           mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 446 gtccctcttcagctcctcaa 465
           ||||||||||||||||||||
Sbjct: 372 gtccctcttcagctcctcaa 353
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>ref|XM_327522.1| Neurospora crassa OR74A hypothetical protein (NCU07237.1) partial
           mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 446 gtccctcttcagctcctcaa 465
           ||||||||||||||||||||
Sbjct: 372 gtccctcttcagctcctcaa 353
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 271     tcggcgggatggccacgacgccga 294
               |||||||||||||| |||||||||
Sbjct: 3524386 tcggcgggatggccgcgacgccga 3524363
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>gb|AC139377.4| Mus musculus chromosome 5 clone RP24-291G12, complete sequence
          Length = 191100

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    gcagatcagatcagatcgagcagg 73
             |||||||||| |||||||||||||
Sbjct: 10400 gcagatcagagcagatcgagcagg 10423
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>gb|AC140042.19| Mus musculus chromosome 5, clone RP23-437D10, complete sequence
          Length = 215786

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    gcagatcagatcagatcgagcagg 73
             |||||||||| |||||||||||||
Sbjct: 29993 gcagatcagagcagatcgagcagg 29970
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>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2
             of 11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   tccttgcagaaggtgaacct 229
             ||||||||||||||||||||
Sbjct: 54729 tccttgcagaaggtgaacct 54710
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>emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chromosome 13, complete
              sequence
          Length = 164061

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    tccttgcagaaggtgaacct 229
              ||||||||||||||||||||
Sbjct: 114838 tccttgcagaaggtgaacct 114819
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 277     ggatggccacgacgccgacc 296
               ||||||||||||||||||||
Sbjct: 4460897 ggatggccacgacgccgacc 4460878
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 271     tcggcgggatggccacgacgccga 294
               |||||||||||||| |||||||||
Sbjct: 3265615 tcggcgggatggccgcgacgccga 3265592
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>emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              6/7
          Length = 326301

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    gccgctgctgctgattgcat 511
              ||||||||||||||||||||
Sbjct: 252719 gccgctgctgctgattgcat 252700
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>gb|AC159538.20| Medicago truncatula clone mth2-48f16, complete sequence
          Length = 123581

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    attcaccaaacaatcatcaa 98
             ||||||||||||||||||||
Sbjct: 51285 attcaccaaacaatcatcaa 51266
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>ref|XM_571941.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 2933

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 484 tcaaggccgccgctgctgct 503
           ||||||||||||||||||||
Sbjct: 830 tcaaggccgccgctgctgct 849
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>gb|AF399915.1|AF399915 Sorghum bicolor phosphoenolpyruvate carboxylase kinase (PPCK) mRNA,
           complete cds
          Length = 1389

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 cgtagtccctcttcagctcc 461
           ||||||||||||||||||||
Sbjct: 48  cgtagtccctcttcagctcc 29
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 303      atcaagtactcgcagaactc 322
                ||||||||||||||||||||
Sbjct: 23228538 atcaagtactcgcagaactc 23228519
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 391     cgatgaagcccgccgccttg 410
               ||||||||||||||||||||
Sbjct: 3923878 cgatgaagcccgccgccttg 3923897
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>gb|AY911415.1| Zea mays phosphoenolpyruvate carboxylase kinase 3 (PPCK3) mRNA,
           complete cds
          Length = 995

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 cgtagtccctcttcagctcc 461
           ||||||||||||||||||||
Sbjct: 72  cgtagtccctcttcagctcc 53
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>gb|AY911414.1| Zea mays phosphoenolpyruvate carboxylase kinase 2 (PPCK2) mRNA,
           complete cds
          Length = 1024

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 cgtagtccctcttcagctcc 461
           ||||||||||||||||||||
Sbjct: 28  cgtagtccctcttcagctcc 9
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 271     tcggcgggatggccacgacgccga 294
               |||||||||||||| |||||||||
Sbjct: 1587094 tcggcgggatggccgcgacgccga 1587117
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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 156     ttcttcctgagcttggccttcatc 179
               ||||||||||||| ||||||||||
Sbjct: 1196116 ttcttcctgagctgggccttcatc 1196139
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 303      atcaagtactcgcagaactc 322
                ||||||||||||||||||||
Sbjct: 23156729 atcaagtactcgcagaactc 23156710
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>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 168063

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   atcaagtactcgcagaactc 322
             ||||||||||||||||||||
Sbjct: 41656 atcaagtactcgcagaactc 41637


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,467,940
Number of Sequences: 3902068
Number of extensions: 3467940
Number of successful extensions: 77322
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76361
Number of HSP's gapped (non-prelim): 958
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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