>PROSC_MOUSE (Q9Z2Y8) Proline synthetase co-transcribed bacterial homolog|
           protein
          Length = 274

 Score = 92.0 bits (227), Expect = 9e-19
 Identities = 48/77 (62%), Positives = 59/77 (76%), Gaps = 3/77 (3%)
 Frame = -2

Query: 529 GLMTIGML--DYSSTPE-NFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGST 359
           GLMTIG    D S  P  +F+ L + R+E+C++LGIP EQ ELSMGMS DF+ AIE+GST
Sbjct: 179 GLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGST 238

Query: 358 NVRVGSTIFGAREYPKK 308
           NVR+GSTIFG R+Y KK
Sbjct: 239 NVRIGSTIFGERDYSKK 255

>PROSC_HUMAN (O94903) Proline synthetase co-transcribed bacterial homolog|
           protein
          Length = 275

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 47/77 (61%), Positives = 58/77 (75%), Gaps = 3/77 (3%)
 Frame = -2

Query: 529 GLMTIGML--DYSSTPE-NFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGST 359
           GLMTIG    D S  P  +F+ L S R+E+C +L IP +Q ELSMGMSADF+ A+E+GST
Sbjct: 179 GLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGST 238

Query: 358 NVRVGSTIFGAREYPKK 308
           NVR+GSTIFG R+Y KK
Sbjct: 239 NVRIGSTIFGERDYSKK 255

>YU68_CAEEL (P52057) Hypothetical UPF0001 protein F09E5.8 in chromosome II|
          Length = 244

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
 Frame = -2

Query: 529 GLMTIGMLDYS-STPEN--FKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGST 359
           G MTIG  D S ++ EN  F+ L   R+   ++ G   +  ELSMGMS DF QAI  G+T
Sbjct: 168 GFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGAT 227

Query: 358 NVRVGSTIFGAREYPKK 308
           +VRVGS +FGAREY  K
Sbjct: 228 SVRVGSKLFGAREYKNK 244

>YBD6_YEAST (P38197) Hypothetical UPF0001 protein YBL036c|
          Length = 257

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
 Frame = -2

Query: 532 SGLMTIGM--LDYSSTPEN--FKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMG 365
           +GLMTIG   + +  + EN  F  L   +K++  + G      +LSMGMSADF +AI  G
Sbjct: 178 NGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT---SLKLSMGMSADFREAIRQG 234

Query: 364 STNVRVGSTIFGAREYPKKN 305
           +  VR+G+ IFGAR  P KN
Sbjct: 235 TAEVRIGTDIFGAR--PPKN 252

>YPI1_VIBAL (P52055) Hypothetical UPF0001 protein in pilT-proC intergenic|
           region (ORF1)
          Length = 233

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
 Frame = -2

Query: 529 GLMTI--GMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTN 356
           GLM+I   + DY S    F+ L + ++ +  E   PE    LSMGMS D   AIE GST 
Sbjct: 163 GLMSIPANVSDYESQLHEFQKLATLKQTL--EAQFPEIDT-LSMGMSGDMTAAIEAGSTM 219

Query: 355 VRVGSTIFGAREY 317
           VR+G+ IFGAR+Y
Sbjct: 220 VRIGTAIFGARDY 232

>Y274_AQUAE (O66631) Hypothetical UPF0001 protein aq_274|
          Length = 228

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
 Frame = -2

Query: 529 GLMTIGMLDYSSTPENFKALTSCRKEVCDELGIPEEQC--ELSMGMSADFEQAIEMGSTN 356
           GLMTI    Y   PE+ +      +E+ DEL          LSMGMS DFE AIE G+T 
Sbjct: 158 GLMTIP--PYLENPEDVRPYFRKLRELRDELQREYNVALPHLSMGMSHDFEVAIEEGATI 215

Query: 355 VRVGSTIFGAREY 317
           VR+G+ +FG R+Y
Sbjct: 216 VRIGTLLFGERKY 228

>YLME_BACSU (O31727) Hypothetical UPF0001 protein ylmE|
          Length = 230

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
 Frame = -2

Query: 532 SGLMTIGML--DYSSTPENFKALTSCRKEVCDELGIPEEQC-ELSMGMSADFEQAIEMGS 362
           +GLMT+  L  D       F++L   R +V  +L  P   C ELSMGMS DFE AIE G+
Sbjct: 153 AGLMTMAPLTDDQDQIRSCFRSLRELRDQV-QKLNQPNAPCTELSMGMSNDFEIAIEEGA 211

Query: 361 TNVRVGSTIFG 329
           T +R+GS++ G
Sbjct: 212 TYIRIGSSLVG 222

>YGGS_ECOLI (P67080) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2

Query: 412 LSMGMSADFEQAIEMGSTNVRVGSTIFGAREYPKK 308
           LS+GMS D E AI  GST VR+G+ IFGAR+Y KK
Sbjct: 200 LSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234

>YGGS_ECOL6 (P67081) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2

Query: 412 LSMGMSADFEQAIEMGSTNVRVGSTIFGAREYPKK 308
           LS+GMS D E AI  GST VR+G+ IFGAR+Y KK
Sbjct: 200 LSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234

>YGGS_ECO57 (P67082) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 23/35 (65%), Positives = 27/35 (77%)
 Frame = -2

Query: 412 LSMGMSADFEQAIEMGSTNVRVGSTIFGAREYPKK 308
           LS+GMS D E AI  GST VR+G+ IFGAR+Y KK
Sbjct: 200 LSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234

>Y112_PASMU (Q9CPD5) Hypothetical UPF0001 protein PM0112|
          Length = 233

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
 Frame = -2

Query: 433 IPEEQCE-LSMGMSADFEQAIEMGSTNVRVGSTIFGAREYPK 311
           +P+ Q + LSMGM+ D   AI+ GST VR+G+ IFGAR+Y K
Sbjct: 192 LPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK 233

>Y461_VIBCH (Q9KUQ4) Hypothetical UPF0001 protein VC0461|
          Length = 236

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = -2

Query: 529 GLMTI--GMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTN 356
           GLM+I   + DY +    F  L   ++++  +     +   LSMGMS D + AIE GST 
Sbjct: 163 GLMSIPENVPDYPAQLAAFTQLAELQQQLAQKY---PQIDTLSMGMSGDMQAAIEAGSTI 219

Query: 355 VRVGSTIFGAREYPK 311
           VR+G+ IFG R+Y +
Sbjct: 220 VRIGTAIFGERDYSR 234

>Y090_HAEIN (P44506) UPF0001 protein HI0090|
          Length = 237

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -2

Query: 433 IPEEQCE-LSMGMSADFEQAIEMGSTNVRVGSTIFGAREY 317
           +P +Q + LSMGM+ D   AI+ GST VR+G+ IFGAR Y
Sbjct: 192 LPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNY 231

>Y394_PSEAE (P24562) Hypothetical UPF0001 protein PA0394|
          Length = 230

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -2

Query: 412 LSMGMSADFEQAIEMGSTNVRVGSTIFGAREY 317
           LSMGMS D E AI  G+T VR+G+ +FGAR+Y
Sbjct: 194 LSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225

>Y556_SYNY3 (P52056) Hypothetical UPF0001 protein slr0556|
          Length = 218

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = -2

Query: 415 ELSMGMSADFEQAIEMGSTNVRVGSTIFGAR 323
           ELSMGMS D+ +AI  G+T +R+G+ +FG R
Sbjct: 187 ELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217

>Y919_MYCLE (Q9CCE2) Hypothetical UPF0001 protein ML0919|
          Length = 257

 Score = 35.4 bits (80), Expect = 0.100
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = -2

Query: 412 LSMGMSADFEQAIEMGSTNVRVGSTIFG 329
           LS GMS DFE A++ GST VRVG+ + G
Sbjct: 223 LSAGMSNDFEIAVKHGSTCVRVGTALLG 250

>Y2172_MYCBO (P67084) Hypothetical UPF0001 protein Mb2172c|
          Length = 258

 Score = 35.4 bits (80), Expect = 0.100
 Identities = 28/69 (40%), Positives = 34/69 (49%)
 Frame = -2

Query: 529 GLMTIGMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVR 350
           GLM I  LD+    E F  L S    V     +      LS GMS D E A++ GST VR
Sbjct: 189 GLMGIPPLDWDPD-EAFDRLQSEHNRV---RAMFPHAIGLSAGMSNDLEVAVKHGSTCVR 244

Query: 349 VGSTIFGAR 323
           VG+ + G R
Sbjct: 245 VGTALLGPR 253

>Y2148_MYCTU (P67083) Hypothetical UPF0001 protein Rv2148c/MT2207|
          Length = 258

 Score = 35.4 bits (80), Expect = 0.100
 Identities = 28/69 (40%), Positives = 34/69 (49%)
 Frame = -2

Query: 529 GLMTIGMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVR 350
           GLM I  LD+    E F  L S    V     +      LS GMS D E A++ GST VR
Sbjct: 189 GLMGIPPLDWDPD-EAFDRLQSEHNRV---RAMFPHAIGLSAGMSNDLEVAVKHGSTCVR 244

Query: 349 VGSTIFGAR 323
           VG+ + G R
Sbjct: 245 VGTALLGPR 253

>Y1368_DEIRA (Q9RUL6) Hypothetical UPF0001 protein DR1368|
          Length = 209

 Score = 35.4 bits (80), Expect = 0.100
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -2

Query: 415 ELSMGMSADFEQAIEMGSTNVRVGSTIF 332
           ELSMGMS D+  A+  G+T VRVG ++F
Sbjct: 181 ELSMGMSGDYPLAVAAGATLVRVGRSLF 208

>Y395_HELPJ (Q9ZKF2) Hypothetical UPF0001 protein jhp_0986|
          Length = 222

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 26/66 (39%), Positives = 37/66 (56%)
 Frame = -2

Query: 529 GLMTIGMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVR 350
           GLM IG      T    K+ T+ +K + D++   +    LSMGMS DFE AI  G+  +R
Sbjct: 160 GLMCIGAHTDDETKIE-KSFTTTKK-LFDQI---KNASVLSMGMSDDFELAIACGANLLR 214

Query: 349 VGSTIF 332
           +GS +F
Sbjct: 215 IGSFLF 220

>Y395_HELPY (O25156) Hypothetical UPF0001 protein HP0395|
          Length = 222

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 23/66 (34%), Positives = 36/66 (54%)
 Frame = -2

Query: 529 GLMTIGMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVR 350
           GLM IG   ++   +  +      K++ D++   +    LSMGMS DFE AI  G+  +R
Sbjct: 160 GLMCIGA--HTDDEKEIEKSFITTKKLFDQI---KNASVLSMGMSDDFELAIACGANLLR 214

Query: 349 VGSTIF 332
           +GS +F
Sbjct: 215 IGSFLF 220

>Y2153_CORGL (O24748) Hypothetical UPF0001 protein Cgl2153/cg2364|
          Length = 221

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = -2

Query: 427 EEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAR 323
           +   E S GMS D   AI+ GST VRVG+ I G R
Sbjct: 184 DRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNR 218

>DNBI_HHV1F (P17469) Major DNA-binding protein (Infected cell protein 8) (ICP 8|
           protein)
          Length = 1196

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
 Frame = -2

Query: 514 GMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGS-- 341
           G  DY+  P + K  T+  + +C+ LG+  ++  L + ++  F++A+ + +T + +G   
Sbjct: 124 GFSDYTPRPGDLKHETT-GEALCERLGLDPDRALLYLVVTEGFKEAVSINNTFLHLGGSD 182

Query: 340 --TIFGAR-----EYPKK--N*DNYRVFL*DRASNSCSIGGKYVSISTDIYPLMFYTCAI 188
             TI GA       YP +    D  RV      +N  SIG K+       YPL F+   +
Sbjct: 183 KVTIGGAEVHRIPVYPLQLFMPDFSRVIAEPFNANHRSIGEKFT------YPLPFFNRPL 236

Query: 187 NK 182
           N+
Sbjct: 237 NR 238

>DNBI_HHV11 (P04296) Major DNA-binding protein (Infected cell protein 8) (ICP 8|
           protein)
          Length = 1196

 Score = 33.1 bits (74), Expect = 0.50
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
 Frame = -2

Query: 514 GMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGS-- 341
           G  DY+  P + K  T+  + +C+ LG+  ++  L + ++  F++A+ + +T + +G   
Sbjct: 124 GFSDYTPRPGDLKHETT-GEALCERLGLDPDRALLYLVVTEGFKEAVCINNTFLHLGGSD 182

Query: 340 --TIFGAR-----EYPKK--N*DNYRVFL*DRASNSCSIGGKYVSISTDIYPLMFYTCAI 188
             TI GA       YP +    D  RV      +N  SIG K+       YPL F+   +
Sbjct: 183 KVTIGGAEVHRIPVYPLQLFMPDFSRVIAEPFNANHRSIGEKFT------YPLPFFNRPL 236

Query: 187 NK 182
           N+
Sbjct: 237 NR 238

>DNBI_HHV1K (P17470) Major DNA-binding protein (Infected cell protein 8) (ICP 8|
           protein)
          Length = 1196

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
 Frame = -2

Query: 514 GMLDYSSTPENFKALTSCRKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGS-- 341
           G  DY+  P + K  T+  + +C+ LG+  ++  L + ++  F++A+ + +T + +G   
Sbjct: 124 GFSDYTPRPGDLKHETT-GEALCERLGLDPDRALLYLVVTEGFKEAVCINNTFLHLGGSD 182

Query: 340 --TIFGAR-----EYPKK--N*DNYRVFL*DRASNSCSIGGKYVSISTDIYPLMFYTCAI 188
             TI GA       YP +    D  RV      +N  SIG  +       YPL F+   +
Sbjct: 183 KVTIGGAEVHRIPVYPLQLFMPDFSRVIAEPFNANHRSIGENFT------YPLPFFNRPL 236

Query: 187 NK 182
           N+
Sbjct: 237 NR 238

>Y497_BUCBP (Q89A48) Hypothetical UPF0001 protein bbp_497|
          Length = 223

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 412 LSMGMSADFEQAIEMGSTNVRVGSTIF 332
           +S+G S D + A+  GST +R+GS+IF
Sbjct: 195 VSLGTSHDIQAALYSGSTLLRIGSSIF 221

>WUS_LYCES (Q84VT7) Protein WUSCHEL (LeWUS)|
          Length = 272

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 65  KHYKDATDESGRNNNTSWNSSAL*MFYNSGRHHDKTISLFIYGTCVEHQRVNIGGNRYIF 244
           KHY++  DE     N    +SAL        H +  IS F    C++H   + GG  +  
Sbjct: 203 KHYEETLDEEQEEENYQRGNSALETLSLFPMHEENIISNF----CIKHHE-SSGGWYHSD 257

Query: 245 TTNTAAVRCTVS 280
             N AA+  T++
Sbjct: 258 NNNLAALELTLN 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,323,603
Number of Sequences: 219361
Number of extensions: 1668104
Number of successful extensions: 3621
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3621
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)