ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEMA_CVPIA (Q8JSP9) Hemagglutinin-esterase precursor (EC 3.1.1.5... 30 4.4
2HEMA_CVP67 (Q8BB26) Hemagglutinin-esterase precursor (EC 3.1.1.5... 30 4.4
3EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor 29 5.7
4ALA12_ARATH (P57792) Putative phospholipid-transporting ATPase 1... 29 7.5

>HEMA_CVPIA (Q8JSP9) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 424

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 187 PDFLFSFCPPIVWTIVSAAALCI-SILPMFNMGLNLGVC*LFIVTLLI 47
           P F F  CP     I S   +C+   LP+  +G+ LGV  + IV LL+
Sbjct: 364 PLFPFGNCPTAASIISSDLPICVYDPLPIILLGILLGVAVIVIVVLLL 411



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>HEMA_CVP67 (Q8BB26) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 424

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 187 PDFLFSFCPPIVWTIVSAAALCI-SILPMFNMGLNLGVC*LFIVTLLI 47
           P F F  CP     I S   +C+   LP+  +G+ LGV  + IV LL+
Sbjct: 364 PLFPFGNCPTAASIISSDLPICVYDPLPIILLGILLGVAVIVIVVLLL 411



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>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor|
          Length = 684

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 264 NPRWHSTV--VYFSACRRLCLLLPWFVLLSRDD 356
           NPRW S +  V  SA +R   +L W+  L  DD
Sbjct: 64  NPRWDSAIQDVLKSAIKRFDSVLSWYATLDNDD 96



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>ALA12_ARATH (P57792) Putative phospholipid-transporting ATPase 12 (EC 3.6.3.1)|
           (Aminophospholipid flippase 12)
          Length = 1184

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 27  AANKLERINKVTINN*QTPRFKPILNIGKMEIHKAAAETIVHTI-GGQKENKKSGGVQRS 203
           A + L R  K  I N +TP  + +   G+ +   A  E ++H I  G+ + K SGG  ++
Sbjct: 745 ACSLLRRDMKQIIINLETPEIQQLEKSGEKDAIAALKENVLHQITSGKAQLKASGGNAKA 804

Query: 204 ILL 212
             L
Sbjct: 805 FAL 807


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,159,174
Number of Sequences: 219361
Number of extensions: 1509287
Number of successful extensions: 3871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3869
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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