ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479238.1| Oryza sativa (japonica cultivar-group), mRNA 88 3e-14
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
3dbj|AK060066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
4dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
5gb|AY104135.1| Zea mays PCO081417 mRNA sequence 68 3e-08
6ref|XM_470711.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 3e-05
8gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genom... 58 3e-05
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
10dbj|AK059565.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
11ref|NM_187538.1| Oryza sativa (japonica cultivar-group), predic... 50 0.007
12gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
13gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
14dbj|AP003390.1| Homo sapiens genomic DNA, chromosome 11q clone:C... 48 0.028
15gb|AC186184.1| Pan troglodytes chromosome UNKNOWN clone CH251-13... 46 0.11
16gb|AC183110.3| Pan troglodytes BAC clone CH251-353M12 from chrom... 46 0.11
17gb|AC159242.2| Mus musculus BAC clone RP24-325A23 from chromosom... 46 0.11
18gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chrom... 46 0.11
19gb|AC011841.7| Homo sapiens chromosome 17, clone RP11-272E10, co... 46 0.11
20gb|AC011689.6|AC011689 Homo sapiens chromosome , clone RP11-15J1... 46 0.11
21dbj|AK030857.1| Mus musculus adult male thymus cDNA, RIKEN full-... 46 0.11
22gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosom... 46 0.11
23gb|AC124529.3| Mus musculus BAC clone RP23-411I8 from chromosome... 44 0.43
24gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, comple... 44 0.43
25gb|AC164547.4| Mus musculus BAC clone RP24-198D11 from chromosom... 42 1.7
26gb|AY548437.1| Fremyella diplosiphon clone 3091B3 putative two c... 42 1.7
27gb|AC006334.3| Homo sapiens BAC clone RP11-421B22 from 7, comple... 42 1.7
28gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, comple... 42 1.7
29gb|AC102567.8| Mus musculus chromosome 9, clone RP23-224F1, comp... 42 1.7
30gb|AC150706.4| Medicago truncatula clone mth2-132l18, complete s... 42 1.7
31gb|AC147539.1| Pan troglodytes clone rp43-131i22, complete sequence 42 1.7
32gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome... 42 1.7
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
34dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
35dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
36emb|BX294376.10| Zebrafish DNA sequence from clone CH211-117M20 ... 42 1.7
37gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome... 42 1.7
38gb|AC171003.2| Mus musculus BAC clone RP23-207H9 from chromosome... 42 1.7
39emb|AL592042.9| Mouse DNA sequence from clone RP23-380K13 on chr... 42 1.7
40ref|NM_118624.3| Arabidopsis thaliana protein translocase AT4G24... 40 6.8
41gb|AC102612.14| Mus musculus chromosome 9, clone RP23-417D20, co... 40 6.8
42gb|AC151794.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 6.8
43gb|AC121832.3| Mus musculus chromosome 10 clone RP24-67D23, comp... 40 6.8
44ref|NM_192952.1| Oryza sativa (japonica cultivar-group), predic... 40 6.8
45gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Ca... 40 6.8
46gb|AF101045.1| Oryza sativa (japonica cultivar-group) putative A... 40 6.8
47gb|U70541.1|OSU70541 Oryza sativa (indica cultivar-group) putati... 40 6.8
48gb|AC149355.2| Phakopsora pachyrhizi clone JGIAFNA-41F13, comple... 40 6.8
49gb|AC079685.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
50gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome... 40 6.8
51gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, c... 40 6.8
52gb|AC124346.3| Mus musculus BAC clone RP24-460E12 from chromosom... 40 6.8
53gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, c... 40 6.8
54gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
55emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, ... 40 6.8
56emb|AL035523.1|ATF13M23 Arabidopsis thaliana DNA chromosome 4, B... 40 6.8
57emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC... 40 6.8
58gb|AC165067.2| Phakopsora pachyrhizi clone JGIAFNA-421A12, compl... 40 6.8
59gb|AY128850.1| Arabidopsis thaliana protein transport protein SE... 40 6.8
60gb|AC022430.6| Homo sapiens chromosome 5 clone CTD-2581L3, compl... 40 6.8
61gb|AY099662.1| Arabidopsis thaliana protein transport protein SE... 40 6.8
62gb|AC008808.7| Homo sapiens chromosome 5 clone CTD-2089N3, compl... 40 6.8
63gb|AC007397.21| Homo sapiens 12p13 BAC RPCI11-439G16 (Roswell Pa... 40 6.8
64gb|AC090257.5| Homo sapiens chromosome 15, clone RP11-301A18, co... 40 6.8
65gb|AC079208.4| Homo sapiens chromosome 15, clone RP11-1149K15, c... 40 6.8
66emb|BX510312.7| Zebrafish DNA sequence from clone CH211-240B21 i... 40 6.8
67gb|AC018787.5|AC018787 Homo sapiens, clone RP11-22O12, complete ... 40 6.8
68emb|BX323880.7| Zebrafish DNA sequence from clone CH211-139K8 in... 40 6.8
69dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
70dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
71gb|AC012449.7| Homo sapiens BAC clone RP11-321K13 from 2, comple... 40 6.8
72gb|AC018462.4| Homo sapiens BAC clone RP11-270B14 from 2, comple... 40 6.8
73dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
74gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Can... 40 6.8
75dbj|AK069077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
76emb|CR931759.10| Zebrafish DNA sequence from clone DKEYP-39E9 in... 40 6.8
77emb|BX510308.15| Zebrafish DNA sequence from clone DKEY-108H8 in... 40 6.8
78gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 6.8
79gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
80emb|BX000452.7| Zebrafish DNA sequence from clone DKEY-12J12 in ... 40 6.8
81dbj|AP006677.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 6.8 
>ref|XM_479238.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 971

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 431 aactacagcagcttctttctctcgaaaaaggtcttcagatgccacagctgcagccc 486
           |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 777 aactacagaagcttctttctctcaaaaaaggtcttcaggtgccacagctgcagccc 722
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                        
Query: 431      aactacagcagcttctttctctcgaaaaaggtcttcagatgccacagctgcagccc 486
                |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 26191342 aactacagaagcttctttctctcaaaaaaggtcttcaggtgccacagctgcagccc 26191287
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>dbj|AK060066.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H05, full
           insert sequence
          Length = 971

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 431 aactacagcagcttctttctctcgaaaaaggtcttcagatgccacagctgcagccc 486
           |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 777 aactacagaagcttctttctctcaaaaaaggtcttcaggtgccacagctgcagccc 722
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                     
Query: 431   aactacagcagcttctttctctcgaaaaaggtcttcagatgccacagctgcagccc 486
             |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 83200 aactacagaagcttctttctctcaaaaaaggtcttcaggtgccacagctgcagccc 83145
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>gb|AY104135.1| Zea mays PCO081417 mRNA sequence
          Length = 1103

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 431 aactacagcagcttctttctctcgaaaaaggtcttcagatgccacagctgcagccctgcc 490
           |||||||||| |||||| ||||| || ||||||||||| |||||||||||||  ||||||
Sbjct: 793 aactacagcaacttcttcctctcaaagaaggtcttcaggtgccacagctgcaaacctgcc 734

             
Query: 491 ac 492
           ||
Sbjct: 733 ac 732
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>ref|XM_470711.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 699

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 440 agcttctttctctcgaaaaaggtcttcagatgccacagctgcagccctgccac 492
           |||||||||||||| || ||| ||||||||||||||| ||||| ||| |||||
Sbjct: 692 agcttctttctctcaaagaagttcttcagatgccacaactgcaaccccgccac 640
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 440      agcttctttctctcgaaaaaggtcttcagatgccacagctgcagccctgccac 492
                |||||||||||||| || ||| ||||||||||||||| ||||| ||| |||||
Sbjct: 14682225 agcttctttctctcaaagaagttcttcagatgccacaactgcaaccccgccac 14682277



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 461      gtcttcagatgccacagctgcagccctgc 489
                ||||| |||||||||||||||||||||||
Sbjct: 11994426 gtctttagatgccacagctgcagccctgc 11994398
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>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete
             sequence
          Length = 130306

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 440   agcttctttctctcgaaaaaggtcttcagatgccacagctgcagccctgccac 492
             |||||||||||||| || ||| ||||||||||||||| ||||| ||| |||||
Sbjct: 21137 agcttctttctctcaaagaagttcttcagatgccacaactgcaaccccgccac 21189
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 440      agcttctttctctcgaaaaaggtcttcagatgccacagctgcagccctgccac 492
                |||||||||||||| || ||| ||||||||||||||| ||||| ||| |||||
Sbjct: 14677159 agcttctttctctcaaagaagttcttcagatgccacaactgcaaccccgccac 14677211



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 461      gtcttcagatgccacagctgcagccctgc 489
                ||||| |||||||||||||||||||||||
Sbjct: 11991189 gtctttagatgccacagctgcagccctgc 11991161
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>dbj|AK059565.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H07, full
           insert sequence
          Length = 1061

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 440 agcttctttctctcgaaaaaggtcttcagatgccacagctgcagccctgccac 492
           |||||||||||||| || ||| ||||||||||||||| ||||| ||| |||||
Sbjct: 843 agcttctttctctcaaagaagttcttcagatgccacaactgcaaccccgccac 791
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>ref|NM_187538.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 732

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 461 gtcttcagatgccacagctgcagccctgc 489
           ||||| |||||||||||||||||||||||
Sbjct: 704 gtctttagatgccacagctgcagccctgc 676
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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0052J20, complete sequence
          Length = 144969

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 461   gtcttcagatgccacagctgcagccctgc 489
             ||||| |||||||||||||||||||||||
Sbjct: 15006 gtctttagatgccacagctgcagccctgc 14978
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>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0014I10, complete sequence
          Length = 113946

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 461   gtcttcagatgccacagctgcagccctgc 489
             ||||| |||||||||||||||||||||||
Sbjct: 95688 gtctttagatgccacagctgcagccctgc 95660
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>dbj|AP003390.1| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2523D13, complete
             sequences
          Length = 221091

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 463   cttcagatgccacagctgcagccctgcc 490
             ||||||||||||||||||| ||||||||
Sbjct: 82366 cttcagatgccacagctgctgccctgcc 82393
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>gb|AC186184.1| Pan troglodytes chromosome UNKNOWN clone CH251-131M1, complete sequence
          Length = 135932

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 268    ctgtatttcattggacagaagct 290
              |||||||||||||||||||||||
Sbjct: 124318 ctgtatttcattggacagaagct 124340



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 268   ctgtatttcattggacagaagct 290
             |||||||||||||||||||||||
Sbjct: 11547 ctgtatttcattggacagaagct 11525
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>gb|AC183110.3| Pan troglodytes BAC clone CH251-353M12 from chromosome 8, complete
              sequence
          Length = 165123

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 268    ctgtatttcattggacagaagct 290
              |||||||||||||||||||||||
Sbjct: 141437 ctgtatttcattggacagaagct 141415
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>gb|AC159242.2| Mus musculus BAC clone RP24-325A23 from chromosome 13, complete sequence
          Length = 193570

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 49     atacaatttgtattactccctccatca 75
              |||||| ||||||||||||||||||||
Sbjct: 150188 atacaaattgtattactccctccatca 150162
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>gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chromosome unknown, complete
              sequence
          Length = 175955

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 268    ctgtatttcattggacagaagct 290
              |||||||||||||||||||||||
Sbjct: 121390 ctgtatttcattggacagaagct 121412



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 268   ctgtatttcattggacagaagct 290
             |||||||||||||||||||||||
Sbjct: 11607 ctgtatttcattggacagaagct 11585
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>gb|AC011841.7| Homo sapiens chromosome 17, clone RP11-272E10, complete sequence
          Length = 174588

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 268   ctgtatttcattggacagaagct 290
             |||||||||||||||||||||||
Sbjct: 62586 ctgtatttcattggacagaagct 62608
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>gb|AC011689.6|AC011689 Homo sapiens chromosome , clone RP11-15J13, complete sequence
          Length = 49910

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 268   ctgtatttcattggacagaagct 290
             |||||||||||||||||||||||
Sbjct: 49280 ctgtatttcattggacagaagct 49302
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>dbj|AK030857.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830431L13 product:unclassifiable, full
            insert sequence
          Length = 2572

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 49   atacaatttgtattactccctccatca 75
            |||||| ||||||||||||||||||||
Sbjct: 1468 atacaaattgtattactccctccatca 1494
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>gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosome 13, complete sequence
          Length = 189362

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 49     atacaatttgtattactccctccatca 75
              |||||| ||||||||||||||||||||
Sbjct: 157023 atacaaattgtattactccctccatca 157049
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>gb|AC124529.3| Mus musculus BAC clone RP23-411I8 from chromosome 3, complete sequence
          Length = 192341

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 18     tttattatgctatatatgttgt 39
              ||||||||||||||||||||||
Sbjct: 140867 tttattatgctatatatgttgt 140846
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>gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, complete sequence
          Length = 186839

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 18     tttattatgctatatatgttgt 39
              ||||||||||||||||||||||
Sbjct: 115660 tttattatgctatatatgttgt 115681
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>gb|AC164547.4| Mus musculus BAC clone RP24-198D11 from chromosome 13, complete sequence
          Length = 177190

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 156    gctaaaaggaacagtgctcataaca 180
              ||||||||||||||||||| |||||
Sbjct: 149545 gctaaaaggaacagtgctcctaaca 149521
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>gb|AY548437.1| Fremyella diplosiphon clone 3091B3 putative two component hybrid
            sensor regulator gene, complete cds
          Length = 3825

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 274  ttcattggacagaagctaggg 294
            |||||||||||||||||||||
Sbjct: 1075 ttcattggacagaagctaggg 1055
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>gb|AC006334.3| Homo sapiens BAC clone RP11-421B22 from 7, complete sequence
          Length = 141899

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 201   ctcagctctacaaaaacaaaa 221
             |||||||||||||||||||||
Sbjct: 52047 ctcagctctacaaaaacaaaa 52067
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>gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, complete sequence
          Length = 208678

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    agaaaggcatttcacaagtat 318
              |||||||||||||||||||||
Sbjct: 184359 agaaaggcatttcacaagtat 184379
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>gb|AC102567.8| Mus musculus chromosome 9, clone RP23-224F1, complete sequence
          Length = 198097

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   agaaaggcatttcacaagtat 318
             |||||||||||||||||||||
Sbjct: 21621 agaaaggcatttcacaagtat 21641
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>gb|AC150706.4| Medicago truncatula clone mth2-132l18, complete sequence
          Length = 105472

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 50    tacaatttgtattactccctccatc 74
             |||||||| ||||||||||||||||
Sbjct: 62029 tacaatttctattactccctccatc 62005
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>gb|AC147539.1| Pan troglodytes clone rp43-131i22, complete sequence
          Length = 175485

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   gtcttcagatgccacagctgc 481
             |||||||||||||||||||||
Sbjct: 98182 gtcttcagatgccacagctgc 98202



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 461   gtcttcagatgccacagctgc 481
             |||||||||||||||||||||
Sbjct: 97406 gtcttcagatgccacagctgc 97386
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>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence
          Length = 189979

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 424    ttgggaaaactacagcagctt 444
              |||||||||||||||||||||
Sbjct: 105782 ttgggaaaactacagcagctt 105802
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 19       ttattatgctatatatgttgt 39
                |||||||||||||||||||||
Sbjct: 28546444 ttattatgctatatatgttgt 28546464
to top
>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1053A04
          Length = 144321

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ttattatgctatatatgttgt 39
             |||||||||||||||||||||
Sbjct: 10457 ttattatgctatatatgttgt 10477
to top
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0017H11
          Length = 158374

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ttattatgctatatatgttgt 39
              |||||||||||||||||||||
Sbjct: 115285 ttattatgctatatatgttgt 115305
to top
>emb|BX294376.10| Zebrafish DNA sequence from clone CH211-117M20 in linkage group 5,
             complete sequence
          Length = 178400

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 255   aaacattttacaactgtattt 275
             |||||||||||||||||||||
Sbjct: 39333 aaacattttacaactgtattt 39313
to top
>gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome 12, complete sequence
          Length = 179665

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   ttgggaaaactacagcagctt 444
             |||||||||||||||||||||
Sbjct: 23731 ttgggaaaactacagcagctt 23751
to top
>gb|AC171003.2| Mus musculus BAC clone RP23-207H9 from chromosome 13, complete sequence
          Length = 218821

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 156   gctaaaaggaacagtgctcataaca 180
             ||||||||||||||||||| |||||
Sbjct: 99812 gctaaaaggaacagtgctcctaaca 99836
to top
>emb|AL592042.9| Mouse DNA sequence from clone RP23-380K13 on chromosome 2, complete
             sequence
          Length = 84122

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 295   cagagaaaggcatttcacaag 315
             |||||||||||||||||||||
Sbjct: 49929 cagagaaaggcatttcacaag 49949
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>ref|NM_118624.3| Arabidopsis thaliana protein translocase AT4G24920 mRNA, complete
           cds
          Length = 510

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 tcaaaaagaggaaacatttt 263
           ||||||||||||||||||||
Sbjct: 380 tcaaaaagaggaaacatttt 399
to top
>gb|AC102612.14| Mus musculus chromosome 9, clone RP23-417D20, complete sequence
          Length = 202804

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   attttacaactgtatttcat 278
             ||||||||||||||||||||
Sbjct: 46739 attttacaactgtatttcat 46758
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>gb|AC151794.1| Ornithorhynchus anatinus chromosome UNK clone OABb-58A1, complete
             sequence
          Length = 148132

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 443   ttctttctctcgaaaaaggtcttc 466
             ||||||||||| ||||||||||||
Sbjct: 32212 ttctttctctcaaaaaaggtcttc 32235
to top
>gb|AC121832.3| Mus musculus chromosome 10 clone RP24-67D23, complete sequence
          Length = 172348

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 234   tatgaaatcatcaaaaagaggaaa 257
             |||||||| |||||||||||||||
Sbjct: 25220 tatgaaattatcaaaaagaggaaa 25243
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>ref|NM_192952.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1890

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 434  tacagcagcttctttctctc 453
            ||||||||||||||||||||
Sbjct: 1185 tacagcagcttctttctctc 1166
to top
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 188027

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   gctctacaaaaacaaaacac 224
             ||||||||||||||||||||
Sbjct: 65791 gctctacaaaaacaaaacac 65772
to top
>gb|AF101045.1| Oryza sativa (japonica cultivar-group) putative ADP-glucose
            pyrophosphorylase subunit SH2 and putative transcription
            factor X1, putative transcription factor X2 and putative
            NADPH-dependent reductase A1 genes, complete cds
          Length = 29877

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 434  tacagcagcttctttctctc 453
            ||||||||||||||||||||
Sbjct: 9734 tacagcagcttctttctctc 9715
to top
>gb|U70541.1|OSU70541 Oryza sativa (indica cultivar-group) putative ADP-glucose
            pyrophosphorylase subunit SH2 and putative
            NADPH-dependent reductase A1 genes, complete cds
          Length = 30034

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 434  tacagcagcttctttctctc 453
            ||||||||||||||||||||
Sbjct: 9741 tacagcagcttctttctctc 9722
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>gb|AC149355.2| Phakopsora pachyrhizi clone JGIAFNA-41F13, complete sequence
          Length = 35230

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tcaaaaagaggaaacatttt 263
             ||||||||||||||||||||
Sbjct: 20003 tcaaaaagaggaaacatttt 19984
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>gb|AC079685.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0012A20, complete sequence
          Length = 131599

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    tttgtattactccctccatc 74
             ||||||||||||||||||||
Sbjct: 80539 tttgtattactccctccatc 80520
to top
>gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome 12, complete sequence
          Length = 183478

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 250    agaggaaacattttacaactgtat 273
              ||||||||||||||||||| ||||
Sbjct: 166480 agaggaaacattttacaacagtat 166503
to top
>gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, complete sequence
          Length = 236220

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   caaaaagaggaaacatttta 264
             ||||||||||||||||||||
Sbjct: 92011 caaaaagaggaaacatttta 91992
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>gb|AC124346.3| Mus musculus BAC clone RP24-460E12 from chromosome 12, complete
             sequence
          Length = 203150

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 250   agaggaaacattttacaactgtat 273
             ||||||||||||||||||| ||||
Sbjct: 37975 agaggaaacattttacaacagtat 37998
to top
>gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, complete sequence
          Length = 207763

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 234  tatgaaatcatcaaaaagaggaaa 257
            |||||||| |||||||||||||||
Sbjct: 7299 tatgaaattatcaaaaagaggaaa 7276
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tttgtattactccctccatc 74
              ||||||||||||||||||||
Sbjct: 799682 tttgtattactccctccatc 799663
to top
>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62
          Length = 197070

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tcaaaaagaggaaacatttt 263
             ||||||||||||||||||||
Sbjct: 93948 tcaaaaagaggaaacatttt 93929
to top
>emb|AL035523.1|ATF13M23 Arabidopsis thaliana DNA chromosome 4, BAC clone  F13M23 (ESSAII
             project)
          Length = 99688

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tcaaaaagaggaaacatttt 263
             ||||||||||||||||||||
Sbjct: 12200 tcaaaaagaggaaacatttt 12181
to top
>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F6I7 (ESSA project)
          Length = 95185

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   tcaaaaagaggaaacatttt 263
             ||||||||||||||||||||
Sbjct: 64523 tcaaaaagaggaaacatttt 64504
to top
>gb|AC165067.2| Phakopsora pachyrhizi clone JGIAFNA-421A12, complete sequence
          Length = 39156

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   tcaaaaagaggaaacatttt 263
             ||||||||||||||||||||
Sbjct: 37789 tcaaaaagaggaaacatttt 37808
to top
>gb|AY128850.1| Arabidopsis thaliana protein transport protein SEC61 gamma
           subunit-like (At4g24920) mRNA, complete cds
          Length = 357

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 tcaaaaagaggaaacatttt 263
           ||||||||||||||||||||
Sbjct: 309 tcaaaaagaggaaacatttt 328
to top
>gb|AC022430.6| Homo sapiens chromosome 5 clone CTD-2581L3, complete sequence
          Length = 71206

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   accatggtttcttaatgaag 342
             ||||||||||||||||||||
Sbjct: 48555 accatggtttcttaatgaag 48574
to top
>gb|AY099662.1| Arabidopsis thaliana protein transport protein SEC61 gamma
           subunit-like (At4g24920) mRNA, complete cds
          Length = 507

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 tcaaaaagaggaaacatttt 263
           ||||||||||||||||||||
Sbjct: 378 tcaaaaagaggaaacatttt 397
to top
>gb|AC008808.7| Homo sapiens chromosome 5 clone CTD-2089N3, complete sequence
          Length = 45775

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  accatggtttcttaatgaag 342
            ||||||||||||||||||||
Sbjct: 3063 accatggtttcttaatgaag 3082
to top
>gb|AC007397.21| Homo sapiens 12p13 BAC RPCI11-439G16 (Roswell Park Cancer Institute
            Human BAC Library) complete sequence
          Length = 104630

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 471  gccacagctgcagccctgcc 490
            ||||||||||||||||||||
Sbjct: 5843 gccacagctgcagccctgcc 5862
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>gb|AC090257.5| Homo sapiens chromosome 15, clone RP11-301A18, complete sequence
          Length = 159299

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 454   gaaaaaggtcttcagatgccacag 477
             |||||||||||||||| |||||||
Sbjct: 10381 gaaaaaggtcttcagaagccacag 10404
to top
>gb|AC079208.4| Homo sapiens chromosome 15, clone RP11-1149K15, complete sequence
          Length = 168252

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 454    gaaaaaggtcttcagatgccacag 477
              |||||||||||||||| |||||||
Sbjct: 129789 gaaaaaggtcttcagaagccacag 129812
to top
>emb|BX510312.7| Zebrafish DNA sequence from clone CH211-240B21 in linkage group 5,
              complete sequence
          Length = 177177

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 252    aggaaacattttacaactgtattt 275
              |||||||||||||| |||||||||
Sbjct: 103607 aggaaacattttactactgtattt 103584
to top
>gb|AC018787.5|AC018787 Homo sapiens, clone RP11-22O12, complete sequence
          Length = 90722

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 454   gaaaaaggtcttcagatgccacag 477
             |||||||||||||||| |||||||
Sbjct: 16400 gaaaaaggtcttcagaagccacag 16423
to top
>emb|BX323880.7| Zebrafish DNA sequence from clone CH211-139K8 in linkage group 2,
             complete sequence
          Length = 166870

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   tcaaaaagaggaaacattttacaa 267
             |||||||||| |||||||||||||
Sbjct: 72882 tcaaaaagagaaaacattttacaa 72905
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tttgtattactccctccatc 74
              ||||||||||||||||||||
Sbjct: 799682 tttgtattactccctccatc 799663
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 434      tacagcagcttctttctctc 453
                ||||||||||||||||||||
Sbjct: 25361442 tacagcagcttctttctctc 25361423
to top
>gb|AC012449.7| Homo sapiens BAC clone RP11-321K13 from 2, complete sequence
          Length = 109335

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   aaaaagaggaaacattttacaact 269
             |||||||||||||||||| |||||
Sbjct: 69237 aaaaagaggaaacatttttcaact 69260
to top
>gb|AC018462.4| Homo sapiens BAC clone RP11-270B14 from 2, complete sequence
          Length = 189326

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 239    aatcatcaaaaagaggaaac 258
              ||||||||||||||||||||
Sbjct: 121124 aatcatcaaaaagaggaaac 121143
to top
>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0663E10
          Length = 162297

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   tacagcagcttctttctctc 453
             ||||||||||||||||||||
Sbjct: 51442 tacagcagcttctttctctc 51423
to top
>gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 151309

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    gctctacaaaaacaaaacac 224
              ||||||||||||||||||||
Sbjct: 123871 gctctacaaaaacaaaacac 123852
to top
>dbj|AK069077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007G13, full
            insert sequence
          Length = 2531

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 434  tacagcagcttctttctctc 453
            ||||||||||||||||||||
Sbjct: 1433 tacagcagcttctttctctc 1414
to top
>emb|CR931759.10| Zebrafish DNA sequence from clone DKEYP-39E9 in linkage group 19,
             complete sequence
          Length = 110315

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   aaaagaggaaacattttaca 266
             ||||||||||||||||||||
Sbjct: 99043 aaaagaggaaacattttaca 99024
to top
>emb|BX510308.15| Zebrafish DNA sequence from clone DKEY-108H8 in linkage group 3, complete
              sequence
          Length = 232247

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    aacattttacaactgtattt 275
              ||||||||||||||||||||
Sbjct: 109149 aacattttacaactgtattt 109130
to top
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    tgggaaaactacagcagctt 444
              ||||||||||||||||||||
Sbjct: 824792 tgggaaaactacagcagctt 824811
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tttgtattactccctccatc 74
              ||||||||||||||||||||
Sbjct: 799679 tttgtattactccctccatc 799660
to top
>emb|BX000452.7| Zebrafish DNA sequence from clone DKEY-12J12 in linkage group 14,
              complete sequence
          Length = 220420

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    aaaaacaaaacacgttacat 231
              ||||||||||||||||||||
Sbjct: 166539 aaaaacaaaacacgttacat 166520
to top
>dbj|AP006677.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT46E19, TM0371b,
             complete sequence
          Length = 67552

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   attttacaactgtatttcat 278
             ||||||||||||||||||||
Sbjct: 28427 attttacaactgtatttcat 28408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,384,506
Number of Sequences: 3902068
Number of extensions: 6384506
Number of successful extensions: 141012
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140555
Number of HSP's gapped (non-prelim): 457
length of query: 499
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 477
effective length of database: 17,147,199,772
effective search space: 8179214291244
effective search space used: 8179214291244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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