Clone Name | rbart22a07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.2... | 138 | 6e-33 | 2 | NGN3_MOUSE (P70661) Neurogenin 3 (Atonal protein homolog 5) (Hel... | 29 | 6.7 | 3 | KRE2_CANAL (Q00310) Glycolipid 2-alpha-mannosyltransferase (EC 2... | 28 | 8.7 | 4 | ATX1_ARATH (Q9C5X4) Histone-lysine N-methyltransferase, H3 lysin... | 28 | 8.7 |
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>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA| N-glycosidase) Length = 560 Score = 138 bits (348), Expect = 6e-33 Identities = 74/101 (73%), Positives = 76/101 (75%) Frame = -3 Query: 459 IVARSKLFDVGCVLFYKEAANKQGVHVRPGEPVXXXXXXXXXXXXXXLTIELDLRRGGSG 280 IVARSKLFD GCVLFY EAA GV VRPGE V LTIELD+R GGSG Sbjct: 463 IVARSKLFDFGCVLFYNEAA---GVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSG 519 Query: 279 DEIVRGELEFKTAIDGLHTERLVGVNGAEFEVTISWSDYPW 157 DEIVRGELEFKTAIDGLHT RLVGVN AEFEVTI WS+YPW Sbjct: 520 DEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVTILWSEYPW 560
>NGN3_MOUSE (P70661) Neurogenin 3 (Atonal protein homolog 5) (Helix-loop-helix| protein mATH-4B) (MATH4B) Length = 214 Score = 28.9 bits (63), Expect = 6.7 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = +2 Query: 155 YQG*SDHEIVTSNSAPLTPT 214 + G SDHE+++SNS P +PT Sbjct: 21 FPGASDHEVLSSNSTPPSPT 40
>KRE2_CANAL (Q00310) Glycolipid 2-alpha-mannosyltransferase (EC 2.4.1.131)| (Alpha-1,2-mannosyltransferase) Length = 431 Score = 28.5 bits (62), Expect = 8.7 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = -1 Query: 395 SRECTCDPGSRFRWRG 348 +R C CDP F WRG Sbjct: 392 ARNCNCDPNKDFTWRG 407
>ATX1_ARATH (Q9C5X4) Histone-lysine N-methyltransferase, H3 lysine-4 specific| ATX1 (EC 2.1.1.43) (H3-K4-HMTase) (Trithorax-homolog protein 1) (TRX-homolog protein 1) (Protein SET DOMAIN GROUP 27) Length = 1062 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/67 (31%), Positives = 30/67 (44%) Frame = -1 Query: 299 FVAADPEMKLLEASLSSKLPSTACIRNVLLVSMVLNSR*QSHGRTILGRHPCEPAGYYQL 120 F ++PE+ L LS PS+ VSM NS LGRH +P GY + Sbjct: 559 FGLSNPEVIKLVQDLSKSRPSSH-------VSMCKNS---------LGRHQNQPTGYRPV 602 Query: 119 QILWNSV 99 ++ W + Sbjct: 603 RVDWKDL 609 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,419,710 Number of Sequences: 219361 Number of extensions: 971993 Number of successful extensions: 2341 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2339 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)