ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.2... 138 6e-33
2NGN3_MOUSE (P70661) Neurogenin 3 (Atonal protein homolog 5) (Hel... 29 6.7
3KRE2_CANAL (Q00310) Glycolipid 2-alpha-mannosyltransferase (EC 2... 28 8.7
4ATX1_ARATH (Q9C5X4) Histone-lysine N-methyltransferase, H3 lysin... 28 8.7

>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA|
           N-glycosidase)
          Length = 560

 Score =  138 bits (348), Expect = 6e-33
 Identities = 74/101 (73%), Positives = 76/101 (75%)
 Frame = -3

Query: 459 IVARSKLFDVGCVLFYKEAANKQGVHVRPGEPVXXXXXXXXXXXXXXLTIELDLRRGGSG 280
           IVARSKLFD GCVLFY EAA   GV VRPGE V              LTIELD+R GGSG
Sbjct: 463 IVARSKLFDFGCVLFYNEAA---GVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSG 519

Query: 279 DEIVRGELEFKTAIDGLHTERLVGVNGAEFEVTISWSDYPW 157
           DEIVRGELEFKTAIDGLHT RLVGVN AEFEVTI WS+YPW
Sbjct: 520 DEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVTILWSEYPW 560



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>NGN3_MOUSE (P70661) Neurogenin 3 (Atonal protein homolog 5) (Helix-loop-helix|
           protein mATH-4B) (MATH4B)
          Length = 214

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 155 YQG*SDHEIVTSNSAPLTPT 214
           + G SDHE+++SNS P +PT
Sbjct: 21  FPGASDHEVLSSNSTPPSPT 40



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>KRE2_CANAL (Q00310) Glycolipid 2-alpha-mannosyltransferase (EC 2.4.1.131)|
           (Alpha-1,2-mannosyltransferase)
          Length = 431

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 395 SRECTCDPGSRFRWRG 348
           +R C CDP   F WRG
Sbjct: 392 ARNCNCDPNKDFTWRG 407



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>ATX1_ARATH (Q9C5X4) Histone-lysine N-methyltransferase, H3 lysine-4 specific|
           ATX1 (EC 2.1.1.43) (H3-K4-HMTase) (Trithorax-homolog
           protein 1) (TRX-homolog protein 1) (Protein SET DOMAIN
           GROUP 27)
          Length = 1062

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -1

Query: 299 FVAADPEMKLLEASLSSKLPSTACIRNVLLVSMVLNSR*QSHGRTILGRHPCEPAGYYQL 120
           F  ++PE+  L   LS   PS+        VSM  NS         LGRH  +P GY  +
Sbjct: 559 FGLSNPEVIKLVQDLSKSRPSSH-------VSMCKNS---------LGRHQNQPTGYRPV 602

Query: 119 QILWNSV 99
           ++ W  +
Sbjct: 603 RVDWKDL 609


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,419,710
Number of Sequences: 219361
Number of extensions: 971993
Number of successful extensions: 2341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2339
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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