ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein 460 e-126
2gb|AY109619.1| Zea mays CL9605_1 mRNA sequence 170 3e-39
3gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence 165 2e-37
4gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
7gb|AC166828.3| Mus musculus BAC clone RP23-332O23 from chromosom... 40 6.2
8gb|AY687447.1| Uncultured bacterium clone HZ16 genomic sequence 40 6.2
9gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome... 40 6.2
10emb|AL596208.3| Human DNA sequence from clone RP11-18M16 on chro... 40 6.2
11gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 40 6.2
12gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, comp... 40 6.2
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
15gb|AC074047.6|AC074047 Mus musculus 7 BAC RP23-377F9 (Roswell Pa... 40 6.2
16gb|AC092081.3| Gallus gallus clone WAG-77D19, complete sequence 40 6.2
17dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
18dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
19gb|AC164099.3| Mus musculus BAC clone RP23-10H9 from chromosome ... 40 6.2
20gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 6.2
21gb|AC132834.4| Homo sapiens chromosome 8, clone CTD-2344M9, comp... 40 6.2

>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein
          Length = 1892

 Score =  460 bits (232), Expect = e-126
 Identities = 391/442 (88%), Gaps = 14/442 (3%)
 Strand = Plus / Minus

                                                                        
Query: 22   cctttattcattacaattatgttagaaaatccaaatcagtacgtgtcaagaagaaacgac 81
            |||||||||||||||| ||| ||||||||| |||||  ||| ||||||||  |||| |||
Sbjct: 1866 cctttattcattacaaatatattagaaaatacaaattggtatgtgtcaag--gaaa-gac 1810

                                                                        
Query: 82   acttatttttgaactcgtacggagttccata--gtatttgtagttgatagtagcccgctg 139
            |||||||||| ||||||||| ||||||||||  |||||||||||||||||||| ||||| 
Sbjct: 1809 acttatttttcaactcgtactgagttccatatagtatttgtagttgatagtagtccgctc 1750

                                                                        
Query: 140  gttcacatggatgtctaccaaggatagtccgaccatgagattgtcacctcgaattcagca 199
            | |||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct: 1749 gctcacatgggtgtctaccaagggtactccgaccataagattgtcacctcgaattcagca 1690

                                                                        
Query: 200  ccattgacaccaacaagacgttccgtatgcaggccgtcgatggcagttttgaactcaagc 259
             |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct: 1689 tcattgacaccaacaagacgtcctgtatggaggccgtcgatggcagttttgaactcaagc 1630

                                                                        
Query: 260  tcgcctctaacaatttcatctccggatccgccgcgacgaaggtcaagctcaatcgtcagc 319
            ||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||| |||
Sbjct: 1629 tcgcctctaacaatttcatctccggatccaccatgacgaatgtcaagctcaatcgtgagc 1570

                                                                        
Query: 320  ggcatgtgcagcggcaaggcgagtgcatgcctcgccaacggaaccggctccccgggtcgc 379
            |||||||||||||||| ||| || |||||||||||||| || ||| ||||||| ||||||
Sbjct: 1569 ggcatgtgcagcggcacggcaagcgcatgcctcgccaaggggaccagctccccaggtcgc 1510

                                                                        
Query: 380  acgtgcactccctgcttgttagcggcctccttgtagaagagcacgcaaccgacgtcgaac 439
            ||| |||||||         ||||||||| |||||||||||||| || ||||  ||||||
Sbjct: 1509 acgcgcactcc---------agcggcctcgttgtagaagagcacacagccgaaatcgaac 1459

                                  
Query: 440  agcttgctgcgagcaacgatcc 461
            ||||||||||||||||||||||
Sbjct: 1458 agcttgctgcgagcaacgatcc 1437



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>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence
          Length = 1251

 Score =  170 bits (86), Expect = 3e-39
 Identities = 252/307 (82%), Gaps = 9/307 (2%)
 Strand = Plus / Plus

                                                                       
Query: 155 taccaaggatagtccgaccatgagattgtcacctcgaattcagcaccattgacaccaaca 214
           |||||||| || | ||||||||| |||| ||| || |||||||| |||||  | ||||||
Sbjct: 169 taccaagggtactgcgaccatgaaattgccacttccaattcagcgccattttctccaaca 228

                                                                       
Query: 215 agacgttccgtatgcaggccgtcgatggcagttttgaactcaagctcgcctctaacaatt 274
           || |||||||| ||| |||||| | | ||||  |||||||||||  | |||| |||||||
Sbjct: 229 agtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctccaacaatt 288

                                                                       
Query: 275 tcatctccggatccgccgcgacgaaggtcaagctcaatcgtcagcggcatgtgcagcggc 334
           ||||| ||||| | ||   || | ||||||||||||||||||||||||||||||||||||
Sbjct: 289 tcatcgccggaacagc---gatgcaggtcaagctcaatcgtcagcggcatgtgcagcggc 345

                                                                       
Query: 335 aaggcgagtgcatgcctcgccaacggaaccggctccccgggtcgcacgtgcactccctgc 394
           | |||||| || | |||||||||| ||| | |||     |||||||||| ||||||    
Sbjct: 346 acggcgagcgcttccctcgccaactgaatcagctnnnnnggtcgcacgttcactcc---a 402

                                                                       
Query: 395 ttgttagcggcctccttgtagaagagcacgcaaccgacgtcgaacagcttgctgcgagca 454
           |||| | |   ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 403 ttgtcacc---ctctttgtagaagagcacgcagccgacgtcgaacagcttgctgcgagca 459

                  
Query: 455 acgatcc 461
           |||||||
Sbjct: 460 acgatcc 466



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>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence
          Length = 1034

 Score =  165 bits (83), Expect = 2e-37
 Identities = 212/253 (83%), Gaps = 9/253 (3%)
 Strand = Plus / Minus

                                                                       
Query: 209 ccaacaagacgttccgtatgcaggccgtcgatggcagttttgaactcaagctcgcctcta 268
           |||||||| |||||||| ||| |||||| | | ||||  |||||||||||  | |||| |
Sbjct: 795 ccaacaagtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctcca 736

                                                                       
Query: 269 acaatttcatctccggatccgccgcgacgaaggtcaagctcaatcgtcagcggcatgtgc 328
           ||||||||||| ||||| | ||   || | ||||||||||||||||||||||||||||||
Sbjct: 735 acaatttcatcgccggaacagc---gatgcaggtcaagctcaatcgtcagcggcatgtgc 679

                                                                       
Query: 329 agcggcaaggcgagtgcatgcctcgccaacggaaccggctccccgggtcgcacgtgcact 388
           ||||||| ||||||||| | |||||||||| ||||| || |||| |||||||||| ||||
Sbjct: 678 agcggcacggcgagtgcttccctcgccaactgaaccagcccccccggtcgcacgttcact 619

                                                                       
Query: 389 ccctgcttgttagcggcctccttgtagaagagcacgcaaccgacgtcgaacagcttgctg 448
           ||    |||| | |   ||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct: 618 cc---attgtcacc---ctctttgtagaagagcacgcagccaacgtcaaacagcttgctg 565

                        
Query: 449 cgagcaacgatcc 461
           |||||||||||||
Sbjct: 564 cgagcaacgatcc 552



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>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22
              map R10571S, complete sequence
          Length = 154441

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 154    ctaccaaggatagtccgaccatgagattgtcac 186
              |||||||||  ||||| ||||||||||||||||
Sbjct: 139378 ctaccaagggaagtccaaccatgagattgtcac 139410



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 154     ctaccaaggatagtccgaccatgagattgtcac 186
               |||||||||  ||||| ||||||||||||||||
Sbjct: 3175607 ctaccaagggaagtccaaccatgagattgtcac 3175575



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 154     ctaccaaggatagtccgaccatgagattgtcac 186
               |||||||||  ||||| ||||||||||||||||
Sbjct: 3184312 ctaccaagggaagtccaaccatgagattgtcac 3184280



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>gb|AC166828.3| Mus musculus BAC clone RP23-332O23 from chromosome 14, complete sequence
          Length = 216845

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tggttcacatggatgtctac 157
              ||||||||||||||||||||
Sbjct: 151583 tggttcacatggatgtctac 151564



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>gb|AY687447.1| Uncultured bacterium clone HZ16 genomic sequence
          Length = 10613

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  tcgtcagcggcatgtgcagcggca 335
            |||||||||||||| |||||||||
Sbjct: 5733 tcgtcagcggcatgggcagcggca 5756



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>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence
          Length = 190553

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    cgtcagcggcatgtgcagcg 332
              ||||||||||||||||||||
Sbjct: 127045 cgtcagcggcatgtgcagcg 127026



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>emb|AL596208.3| Human DNA sequence from clone RP11-18M16 on chromosome 6, complete
             sequence
          Length = 114796

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    ttacaattatgttagaaaat 51
             ||||||||||||||||||||
Sbjct: 82346 ttacaattatgttagaaaat 82327



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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 36     aattatgttagaaaatccaaatca 59
              |||||||||| |||||||||||||
Sbjct: 118399 aattatgttaaaaaatccaaatca 118422



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>gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, complete sequence
          Length = 189706

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    tttattcattacaattatgt 43
             ||||||||||||||||||||
Sbjct: 67658 tttattcattacaattatgt 67639



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        aaaacgagggaagtatatta 20
                ||||||||||||||||||||
Sbjct: 19581486 aaaacgagggaagtatatta 19581505



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 35      caattatgttagaaaatccaaatc 58
               ||||||||||||||||| ||||||
Sbjct: 4557907 caattatgttagaaaatgcaaatc 4557884



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>gb|AC074047.6|AC074047 Mus musculus 7 BAC RP23-377F9 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 150351

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   cgtcagcggcatgtgcagcg 332
             ||||||||||||||||||||
Sbjct: 33476 cgtcagcggcatgtgcagcg 33457



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>gb|AC092081.3| Gallus gallus clone WAG-77D19, complete sequence
          Length = 144092

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   cctccttgtagaagagcacg 424
             ||||||||||||||||||||
Sbjct: 78990 cctccttgtagaagagcacg 78971



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>dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1339_B08
          Length = 119212

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    caattatgttagaaaatccaaatc 58
             ||||||||||||||||| ||||||
Sbjct: 23247 caattatgttagaaaatgcaaatc 23224



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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0042B03
          Length = 167669

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aaaacgagggaagtatatta 20
             ||||||||||||||||||||
Sbjct: 57046 aaaacgagggaagtatatta 57065



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>gb|AC164099.3| Mus musculus BAC clone RP23-10H9 from chromosome 14, complete sequence
          Length = 221612

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tggttcacatggatgtctac 157
             ||||||||||||||||||||
Sbjct: 27548 tggttcacatggatgtctac 27529



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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 195    cagcaccattgacaccaacaagac 218
              ||||||| ||||||||||||||||
Sbjct: 114337 cagcaccgttgacaccaacaagac 114314



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>gb|AC132834.4| Homo sapiens chromosome 8, clone CTD-2344M9, complete sequence
          Length = 156318

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tcattacaattatgttagaa 48
             ||||||||||||||||||||
Sbjct: 35542 tcattacaattatgttagaa 35523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,951,842
Number of Sequences: 3902068
Number of extensions: 2951842
Number of successful extensions: 51292
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51168
Number of HSP's gapped (non-prelim): 122
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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