Clone Name | rbart22a07 |
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Clone Library Name | barley_pub |
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 460 bits (232), Expect = e-126 Identities = 391/442 (88%), Gaps = 14/442 (3%) Strand = Plus / Minus Query: 22 cctttattcattacaattatgttagaaaatccaaatcagtacgtgtcaagaagaaacgac 81 |||||||||||||||| ||| ||||||||| ||||| ||| |||||||| |||| ||| Sbjct: 1866 cctttattcattacaaatatattagaaaatacaaattggtatgtgtcaag--gaaa-gac 1810 Query: 82 acttatttttgaactcgtacggagttccata--gtatttgtagttgatagtagcccgctg 139 |||||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||| Sbjct: 1809 acttatttttcaactcgtactgagttccatatagtatttgtagttgatagtagtccgctc 1750 Query: 140 gttcacatggatgtctaccaaggatagtccgaccatgagattgtcacctcgaattcagca 199 | |||||||| |||||||||||| || ||||||||| ||||||||||||||||||||||| Sbjct: 1749 gctcacatgggtgtctaccaagggtactccgaccataagattgtcacctcgaattcagca 1690 Query: 200 ccattgacaccaacaagacgttccgtatgcaggccgtcgatggcagttttgaactcaagc 259 |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| Sbjct: 1689 tcattgacaccaacaagacgtcctgtatggaggccgtcgatggcagttttgaactcaagc 1630 Query: 260 tcgcctctaacaatttcatctccggatccgccgcgacgaaggtcaagctcaatcgtcagc 319 ||||||||||||||||||||||||||||| || |||||| ||||||||||||||| ||| Sbjct: 1629 tcgcctctaacaatttcatctccggatccaccatgacgaatgtcaagctcaatcgtgagc 1570 Query: 320 ggcatgtgcagcggcaaggcgagtgcatgcctcgccaacggaaccggctccccgggtcgc 379 |||||||||||||||| ||| || |||||||||||||| || ||| ||||||| |||||| Sbjct: 1569 ggcatgtgcagcggcacggcaagcgcatgcctcgccaaggggaccagctccccaggtcgc 1510 Query: 380 acgtgcactccctgcttgttagcggcctccttgtagaagagcacgcaaccgacgtcgaac 439 ||| ||||||| ||||||||| |||||||||||||| || |||| |||||| Sbjct: 1509 acgcgcactcc---------agcggcctcgttgtagaagagcacacagccgaaatcgaac 1459 Query: 440 agcttgctgcgagcaacgatcc 461 |||||||||||||||||||||| Sbjct: 1458 agcttgctgcgagcaacgatcc 1437
>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence Length = 1251 Score = 170 bits (86), Expect = 3e-39 Identities = 252/307 (82%), Gaps = 9/307 (2%) Strand = Plus / Plus Query: 155 taccaaggatagtccgaccatgagattgtcacctcgaattcagcaccattgacaccaaca 214 |||||||| || | ||||||||| |||| ||| || |||||||| ||||| | |||||| Sbjct: 169 taccaagggtactgcgaccatgaaattgccacttccaattcagcgccattttctccaaca 228 Query: 215 agacgttccgtatgcaggccgtcgatggcagttttgaactcaagctcgcctctaacaatt 274 || |||||||| ||| |||||| | | |||| ||||||||||| | |||| ||||||| Sbjct: 229 agtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctccaacaatt 288 Query: 275 tcatctccggatccgccgcgacgaaggtcaagctcaatcgtcagcggcatgtgcagcggc 334 ||||| ||||| | || || | |||||||||||||||||||||||||||||||||||| Sbjct: 289 tcatcgccggaacagc---gatgcaggtcaagctcaatcgtcagcggcatgtgcagcggc 345 Query: 335 aaggcgagtgcatgcctcgccaacggaaccggctccccgggtcgcacgtgcactccctgc 394 | |||||| || | |||||||||| ||| | ||| |||||||||| |||||| Sbjct: 346 acggcgagcgcttccctcgccaactgaatcagctnnnnnggtcgcacgttcactcc---a 402 Query: 395 ttgttagcggcctccttgtagaagagcacgcaaccgacgtcgaacagcttgctgcgagca 454 |||| | | ||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 403 ttgtcacc---ctctttgtagaagagcacgcagccgacgtcgaacagcttgctgcgagca 459 Query: 455 acgatcc 461 ||||||| Sbjct: 460 acgatcc 466
>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence Length = 1034 Score = 165 bits (83), Expect = 2e-37 Identities = 212/253 (83%), Gaps = 9/253 (3%) Strand = Plus / Minus Query: 209 ccaacaagacgttccgtatgcaggccgtcgatggcagttttgaactcaagctcgcctcta 268 |||||||| |||||||| ||| |||||| | | |||| ||||||||||| | |||| | Sbjct: 795 ccaacaagtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctcca 736 Query: 269 acaatttcatctccggatccgccgcgacgaaggtcaagctcaatcgtcagcggcatgtgc 328 ||||||||||| ||||| | || || | |||||||||||||||||||||||||||||| Sbjct: 735 acaatttcatcgccggaacagc---gatgcaggtcaagctcaatcgtcagcggcatgtgc 679 Query: 329 agcggcaaggcgagtgcatgcctcgccaacggaaccggctccccgggtcgcacgtgcact 388 ||||||| ||||||||| | |||||||||| ||||| || |||| |||||||||| |||| Sbjct: 678 agcggcacggcgagtgcttccctcgccaactgaaccagcccccccggtcgcacgttcact 619 Query: 389 ccctgcttgttagcggcctccttgtagaagagcacgcaaccgacgtcgaacagcttgctg 448 || |||| | | ||| ||||||||||||||||| || ||||| |||||||||||| Sbjct: 618 cc---attgtcacc---ctctttgtagaagagcacgcagccaacgtcaaacagcttgctg 565 Query: 449 cgagcaacgatcc 461 ||||||||||||| Sbjct: 564 cgagcaacgatcc 552
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 154 ctaccaaggatagtccgaccatgagattgtcac 186 ||||||||| ||||| |||||||||||||||| Sbjct: 139378 ctaccaagggaagtccaaccatgagattgtcac 139410
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 154 ctaccaaggatagtccgaccatgagattgtcac 186 ||||||||| ||||| |||||||||||||||| Sbjct: 3175607 ctaccaagggaagtccaaccatgagattgtcac 3175575
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 154 ctaccaaggatagtccgaccatgagattgtcac 186 ||||||||| ||||| |||||||||||||||| Sbjct: 3184312 ctaccaagggaagtccaaccatgagattgtcac 3184280
>gb|AC166828.3| Mus musculus BAC clone RP23-332O23 from chromosome 14, complete sequence Length = 216845 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tggttcacatggatgtctac 157 |||||||||||||||||||| Sbjct: 151583 tggttcacatggatgtctac 151564
>gb|AY687447.1| Uncultured bacterium clone HZ16 genomic sequence Length = 10613 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 tcgtcagcggcatgtgcagcggca 335 |||||||||||||| ||||||||| Sbjct: 5733 tcgtcagcggcatgggcagcggca 5756
>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence Length = 190553 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cgtcagcggcatgtgcagcg 332 |||||||||||||||||||| Sbjct: 127045 cgtcagcggcatgtgcagcg 127026
>emb|AL596208.3| Human DNA sequence from clone RP11-18M16 on chromosome 6, complete sequence Length = 114796 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 ttacaattatgttagaaaat 51 |||||||||||||||||||| Sbjct: 82346 ttacaattatgttagaaaat 82327
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 aattatgttagaaaatccaaatca 59 |||||||||| ||||||||||||| Sbjct: 118399 aattatgttaaaaaatccaaatca 118422
>gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, complete sequence Length = 189706 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tttattcattacaattatgt 43 |||||||||||||||||||| Sbjct: 67658 tttattcattacaattatgt 67639
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaacgagggaagtatatta 20 |||||||||||||||||||| Sbjct: 19581486 aaaacgagggaagtatatta 19581505
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 caattatgttagaaaatccaaatc 58 ||||||||||||||||| |||||| Sbjct: 4557907 caattatgttagaaaatgcaaatc 4557884
>gb|AC074047.6|AC074047 Mus musculus 7 BAC RP23-377F9 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 150351 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cgtcagcggcatgtgcagcg 332 |||||||||||||||||||| Sbjct: 33476 cgtcagcggcatgtgcagcg 33457
>gb|AC092081.3| Gallus gallus clone WAG-77D19, complete sequence Length = 144092 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 cctccttgtagaagagcacg 424 |||||||||||||||||||| Sbjct: 78990 cctccttgtagaagagcacg 78971
>dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_B08 Length = 119212 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 caattatgttagaaaatccaaatc 58 ||||||||||||||||| |||||| Sbjct: 23247 caattatgttagaaaatgcaaatc 23224
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaacgagggaagtatatta 20 |||||||||||||||||||| Sbjct: 57046 aaaacgagggaagtatatta 57065
>gb|AC164099.3| Mus musculus BAC clone RP23-10H9 from chromosome 14, complete sequence Length = 221612 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tggttcacatggatgtctac 157 |||||||||||||||||||| Sbjct: 27548 tggttcacatggatgtctac 27529
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 cagcaccattgacaccaacaagac 218 ||||||| |||||||||||||||| Sbjct: 114337 cagcaccgttgacaccaacaagac 114314
>gb|AC132834.4| Homo sapiens chromosome 8, clone CTD-2344M9, complete sequence Length = 156318 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tcattacaattatgttagaa 48 |||||||||||||||||||| Sbjct: 35542 tcattacaattatgttagaa 35523 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,951,842 Number of Sequences: 3902068 Number of extensions: 2951842 Number of successful extensions: 51292 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51168 Number of HSP's gapped (non-prelim): 122 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)