ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart21h08 |
|---|---|
| Clone Library Name | barley_pub |
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 44.7 bits (104), Expect = 9e-05 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Frame = -1 Query: 417 PNVVLALD--GGGEWPMTGKNSMVDVKPGTACVAFVEMEAGDGGAPAVILGGAQMEDFVL 244 P+V L +D G W ++G++ MV +PG C+ M G V LG Q+E+ ++ Sbjct: 344 PSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGV--MNGGMQPRAEVTLGTRQLEEKLM 401 Query: 243 DFDMEKKRLGFIRL---PHFTGCGNL 175 FD+ + R+GF H CG+L Sbjct: 402 VFDLARSRVGFSTSSLHSHGVKCGDL 427
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 43.5 bits (101), Expect = 2e-04 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -1 Query: 417 PNVVLALD--GGGEWPMTGKNSMVDVKPGTACVAFVEMEAGDGGAPAVILGGAQMEDFVL 244 P+V L +D G W ++G++ MV +PG C+ M G + LG Q+E+ ++ Sbjct: 338 PSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGV--MNGGMQPRAEITLGARQLEENLV 395 Query: 243 DFDMEKKRLGF 211 FD+ + R+GF Sbjct: 396 VFDLARSRVGF 406
>ASP3_CAEEL (P55956) Aspartic protease 3 precursor (EC 3.4.23.-)| Length = 398 Score = 32.3 bits (72), Expect = 0.48 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Frame = -1 Query: 423 SVPNVVLALDGGGEWPMTGKNSMVDVKPG----TACVAFVEMEAGDGGAPAVILGGAQME 256 S+PN+ L GG + + GK+ ++ + G T F+ M+ P ILG + Sbjct: 318 SLPNITFNL-GGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIG 376 Query: 255 DFVLDFDMEKKRLGF 211 F FD KR+GF Sbjct: 377 RFYSVFDHGNKRVGF 391
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +2 Query: 272 PRITAGAPPSPASISTNATHAVPGLTSTIEFFPVIGHSPPPSSA 403 P + A P PA+I+ H P ST P SP P+S+ Sbjct: 22 PTVPATTPARPATITIQRRHPAPKADSTPHTLPPFSPSPSPASS 65
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +2 Query: 266 APPRITAGAPPSPASISTNATHAVPGLTSTIEFFPVIGHSPPPSSAST 409 +PP T PP + S T + TST P SPPP++ +T Sbjct: 1603 SPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTT 1650 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +2 Query: 266 APPRITAGAPPSPASISTNATHAVPGLTSTIEFFPVIGHSPPPSSAST 409 +PP T PP + S T + TST P SPPP++ +T Sbjct: 1524 SPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTT 1571 Score = 28.1 bits (61), Expect = 9.0 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +2 Query: 266 APPRITAGAPPSPASISTNATHAVPGLTSTIEFFPVIGHSPPPSSASTTLGT 421 +PP T PP+ + T P T+T P SPP ++ +T L T Sbjct: 1400 SPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPT 1451
>PEVR2_MOUSE (Q9D8F3) Porcine endogenous retrovirus A receptor 2 homolog| precursor (PERV-A receptor 2 homolog) (Protein GPR172B) Length = 450 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +2 Query: 260 IWAPPRITAGAPPSPASISTNATHAVPGLTSTIEFFPVIGHSPPPSSASTTLG 418 +W AG P S A ++ A+ S + F P + H PPP S LG Sbjct: 98 LWNHVAPVAGKPYSVAFLTLAFVLALACCASNVTFLPFLSHLPPPFLRSFFLG 150
>ATG21_CANGA (Q6FRU4) Autophagy-related protein 21| Length = 453 Score = 30.4 bits (67), Expect = 1.8 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -2 Query: 110 LFIYSVLSITPCNNNNPVHRGCILR 36 + +Y L++ P N N VH+GC+L+ Sbjct: 245 IVVYDALNLKPINYLNSVHKGCVLK 269
>T7L1B_BRARE (Q800Q5) Transcription factor 7-like 1-B (HMG box transcription| factor 3-B) (TCF-3-B) Length = 551 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +2 Query: 266 APPRITAGAPPSPASISTNATHAVP-GLTSTIEFFPVIGHSPPPSSASTT 412 A P +P +PA+ T++ A P LT+ E FP++ PP SS+S++ Sbjct: 451 ATPSAALASPAAPAA--THSEQAQPLSLTTKPERFPLLSKPPPSSSSSSS 498
>CATD_PIG (P00795) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D| light chain; Cathepsin D heavy chain] Length = 345 Score = 29.6 bits (65), Expect = 3.1 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = -1 Query: 423 SVPNVVLALDGGGEWPMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 253 S+P+V + L GG ++ ++ +N + V T C++ F+ M+ G P ILG + Sbjct: 269 SLPDVTVTL-GGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGR 327 Query: 252 FVLDFDMEKKRLG 214 + FD + R+G Sbjct: 328 YYTVFDRDLNRVG 340
>OTX1_HUMAN (P32242) Homeobox protein OTX1| Length = 354 Score = 29.3 bits (64), Expect = 4.0 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = +2 Query: 212 NPXXXXXXXXXXXXXXIWAPPRITAGAPPSPASISTNATHAVPGLTSTIEFFPVIGHSPP 391 NP IW+P I+ G+ +PAS+S A P TS ++ G + Sbjct: 160 NPVAAASSLSTPAASSIWSPASISPGS--APASVSVPEPLAAPSNTSCMQRSVAAGAATA 217 Query: 392 PSSASTTLG 418 +S + G Sbjct: 218 AASYPMSYG 226
>PEVR2_PAPHA (Q863Y8) Porcine endogenous retrovirus A receptor 2 precursor| (PERV-A receptor 2) (Protein GPR172B) Length = 448 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +2 Query: 260 IWAPPRITAGAPPSPASISTNATHAVPGLTSTIEFFPVIGHSPPPSSASTTLG 418 +W AG S A ++ A+ TS + F P + H PPP S LG Sbjct: 98 LWHHVAPVAGQLHSVAFLTLALVLALACCTSNVTFLPFLSHLPPPFLRSFFLG 150
>PEVR2_HUMAN (Q9NWF4) Porcine endogenous retrovirus A receptor 2 precursor| (PERV-A receptor 2) (Protein GPR172B) Length = 448 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +2 Query: 260 IWAPPRITAGAPPSPASISTNATHAVPGLTSTIEFFPVIGHSPPPSSASTTLG 418 +W AG S A ++ A+ TS + F P + H PPP S LG Sbjct: 98 LWHHVAPVAGQLHSVAFLTLALVLAMACCTSNVTFLPFLSHLPPPFLRSFFLG 150
>CATD_CHICK (Q05744) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D| light chain; Cathepsin D heavy chain] Length = 398 Score = 28.9 bits (63), Expect = 5.3 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = -1 Query: 423 SVPNVVLALDGGGEWPMTGKNSM--VDVKPGTACVA-FVEMEAGDGGAPAVILGGAQMED 253 S+P V L L GG + +TG+ + V + T C++ F ++ G P ILG + Sbjct: 322 SLPVVTLML-GGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGP 380 Query: 252 FVLDFDMEKKRLGFIR 205 + FD + +GF + Sbjct: 381 YYTVFDRDNDSVGFAK 396
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 281 TAGAPPSPASISTNATHAVPGLTST 355 TAG PS IST H VPG T+T Sbjct: 249 TAGGAPSIPPISTMPPHTVPGSTNT 273
>ATG21_ASHGO (Q75D34) Autophagy-related protein 21| Length = 409 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -2 Query: 122 YVISLFIYSVLSITPCNNNNPVHRG 48 Y+ L +Y L++TP N N VH+G Sbjct: 200 YINDLVVYDALNMTPLNYLNTVHKG 224
>SPP41_YEAST (P38904) Protein SPP41| Length = 1435 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 290 APPSPASISTNATHAVPGLTSTIEFFPVIGHSPPPSSASTTL 415 A P P S ST A H + G+T+ I+ + PP S A +T+ Sbjct: 958 ATPDPHSNSTIAGHTLKGVTTPIKIEDSDANVPPVSIAVSTI 999
>CATD_MOUSE (P18242) Cathepsin D precursor (EC 3.4.23.5)| Length = 410 Score = 28.9 bits (63), Expect = 5.3 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = -1 Query: 423 SVPNVVLALDGGGEWPMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 253 S+P V L L GG + + ++ V G T C++ F+ M+ P ILG + Sbjct: 332 SLPTVYLKL-GGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGS 390 Query: 252 FVLDFDMEKKRLGF 211 + FD + R+GF Sbjct: 391 YYTVFDRDNNRVGF 404
>CATD_CANFA (Q4LAL9) Cathepsin D precursor (EC 3.4.23.5)| Length = 410 Score = 28.9 bits (63), Expect = 5.3 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = -1 Query: 423 SVPNVVLALDGGGEWPMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 253 ++P+V L L GG + ++ ++ + V G T C++ F+ M+ G P ILG + Sbjct: 332 TLPDVTLKL-GGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGC 390 Query: 252 FVLDFDMEKKRLG 214 + FD ++ R+G Sbjct: 391 YYTVFDRDQNRVG 403
>Y1408_METKA (Q8TVI1) UPF0245 protein MK1408| Length = 402 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -1 Query: 360 SMVDVKPGTACVAFVEMEAGDG 295 S+VD+KPG +A+VE E G G Sbjct: 367 SVVDLKPGDKVLAYVETEEGKG 388
>FOXN4_HUMAN (Q96NZ1) Forkhead box protein N4| Length = 517 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 290 APPSPASISTNATHAVPGLTSTIEFFPVIGHSPPP-SSASTTLGTE 424 AP SPA T HA+P L+ + P +G +P + ST + TE Sbjct: 372 APDSPAPAQTPPLHALPDLSPSPLPHPAMGRAPVDFINISTDMNTE 417
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Frame = +2 Query: 269 PPRITAGAPPSPASISTNATHA--------VPGLTSTIEFFPVIGHSPPPSSASTTLGT 421 PP++ +P + S+ AT + +P LTST +P PSS T GT Sbjct: 2993 PPKVLTSQATTPTATSSKATSSSSPRTATTLPVLTSTATKSTATSFTPIPSSTLGTTGT 3051
>CX6A1_MOUSE (P43024) Cytochrome c oxidase polypeptide VIa-liver, mitochondrial| precursor (EC 1.9.3.1) Length = 111 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +1 Query: 274 EDHRRRPAVAGLHLHERNARRPWLDVHHRVLPGHRP 381 E+H R P VA HL R PW D +H + H P Sbjct: 66 EEHERPPFVAYPHLRIRTKPFPWGDGNHTLF--HNP 99
>CATD_BOVIN (P80209) Cathepsin D precursor (EC 3.4.23.5)| Length = 390 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = -1 Query: 423 SVPNVVLALDGGGEWPMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 253 S+P V + L GG ++ ++ ++ + V T C++ F+ M+ G P ILG + Sbjct: 312 SLPEVTVKL-GGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGR 370 Query: 252 FVLDFDMEKKRLG 214 + FD ++ R+G Sbjct: 371 YYTVFDRDQNRVG 383
>CATD_CLUHA (Q9DEX3) Cathepsin D precursor (EC 3.4.23.5)| Length = 396 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = -1 Query: 393 GGGEWPMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMEDFVLDFDMEKK 223 GG + +TG+ ++ G T C++ + +E P ILG + + FD E Sbjct: 329 GGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESN 388 Query: 222 RLGFIR 205 R+GF + Sbjct: 389 RVGFAK 394
>ELF4_MOUSE (Q9Z2U4) ETS-related transcription factor Elf-4 (E74-like factor 4)| (Myeloid Elf-1-like factor) Length = 655 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = +2 Query: 281 TAGAPPSPASISTNATHAVPGLTSTIEFFP---VIGHSPPPSSASTT 412 T + P+P++I PG T T++ P V+ + PP S+ + T Sbjct: 393 TVSSSPAPSNIHLGVAPVGPGSTVTLQTIPLTTVLTNGPPASTTAPT 439
>DGA1_SCHPO (O74850) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)| (Diglyceride acyltransferase) Length = 345 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -1 Query: 333 ACVAFVEMEAGD------GGAPAVILGGAQMEDFVLDFDMEKKRLGFIRLPHFTG 187 +CV+ + + GD GGA +L + VL KKR GF++L TG Sbjct: 178 SCVSILSRKPGDSVLIVIGGAQESLLSRPGQNNLVL-----KKRFGFVKLAFLTG 227 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,800,683 Number of Sequences: 219361 Number of extensions: 1076569 Number of successful extensions: 3699 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3686 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
