Clone Information

BLAST Search Result

Clone Name	rbart21h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ581529.1\|HVU581529 Hordeum vulgare xi gene for xylanase in...	549	e-153
2	emb\|AJ581531.1\|SCE581531 Secale cereale partial xi-IV gene for x...	341	1e-90
3	emb\|AJ697851.1\| Triticum aestivum xi-IB gene for xylanase inhibi...	333	3e-88
4	emb\|AJ581532.1\|SCE581532 Secale cereale xi-II/III gene for xylan...	333	3e-88
5	dbj\|AB178471.1\| Triticum aestivum Taxi-III gene for xylanase inh...	333	3e-88
6	dbj\|AB114627.1\| Triticum aestivum Taxi-III mRNA for xylanase inh...	333	3e-88
7	emb\|AJ697850.1\| Triticum aestivum partial xi-IIB gene for xylana...	317	2e-83
8	dbj\|AB114628.1\| Triticum aestivum Taxi-IV mRNA for xylanase inhi...	317	2e-83
9	emb\|AJ581530.1\|SCE581530 Secale cereale partial xi-I gene for xy...	315	6e-83
10	dbj\|AB114626.1\| Triticum aestivum taxi-I mRNA for xylanase inhib...	315	6e-83
11	emb\|AJ438880.1\|TAE438880 Triticum aestivum xiI gene for xylanase...	315	6e-83
12	emb\|AJ697849.1\| Triticum aestivum partial xi-IIA gene for xylana...	285	6e-74
13	gb\|BT009260.1\| Triticum aestivum clone wlk4.pk0017.d2:fis, full ...	278	1e-71
14	ref\|NM_190072.1\| Oryza sativa (japonica cultivar-group), predic...	78	3e-11
15	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
16	dbj\|AP003269.2\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
17	dbj\|AK105806.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	3e-11
18	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	46	0.093
19	gb\|CP000081.1\| Leishmania major chromosome 35, complete sequence	44	0.37
20	gb\|CP000125.1\| Burkholderia pseudomallei 1710b chromosome II, co...	44	0.37
21	ref\|XM_838074.1\| Leishmania major strain Friedlin SNF-7-like pro...	44	0.37
22	ref\|XM_536297.2\| PREDICTED: Canis familiaris similar to monogeni...	44	0.37
23	emb\|BX571966.1\| Burkholderia pseudomallei strain K96243, chromos...	44	0.37
24	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	44	0.37
25	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	44	0.37
26	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	42	1.4
27	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	40	5.7
28	gb\|AY181039.1\| Methylobacterium extorquens enolase (eno) gene, c...	40	5.7
29	ref\|XM_649986.1\| Entamoeba histolytica HM-1:IMSS patatin-like ph...	40	5.7
30	emb\|AL645817.1\| Human DNA sequence from clone RP1-2A2 on chromos...	40	5.7
31	gb\|AC135643.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
32	gb\|AE010300.1\| Leptospira interrogans serovar lai str. 56601 chr...	40	5.7
33	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
34	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
35	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
36	dbj\|AP003766.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.7
37	ref\|XM_561218.1\| Anopheles gambiae str. PEST ENSANGP00000026539 ...	40	5.7
38	emb\|Z84816.1\|HS2A2B Human DNA sequence from PAC 2A2 on chromosom...	40	5.7
39	gb\|AE016823.1\| Leptospira interrogans serovar Copenhageni str. F...	40	5.7
40	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
41	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.7
42	emb\|AL731883.4\|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa...	40	5.7
43	emb\|AL731785.2\|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa...	40	5.7
44	gb\|U55381.1\|LTU55381 Leishmania tropica P-glycoprotein E gene, c...	40	5.7
45	dbj\|AB007905.1\| Schizosaccharomyces pombe gene for Cad1 protein,...	40	5.7

>emb|AJ581529.1|HVU581529 Hordeum vulgare xi gene for xylanase inhibitor
          Length = 1255

 Score =  549 bits (277), Expect = e-153
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                        
Query: 138  ttcataaaaccgggcgctagcgttttttctaaaagttcaagttgccgcaacccgtgaagt 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 ttcataaaaccgggcgctagcgttttttctaaaagttcaagttgccgcaacccgtgaagt 1196

                                                                        
Query: 198  gcggcagcctgataaacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcct 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 gcggcagcctgataaacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcct 1136

                                                                        
Query: 258  ccatctgggcacctccgaggatcaccgccggcgccccgccgtcgccggcctccatctcca 317
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 ccatctgggcccctccgaggatcaccgccggcgccccgccgtcgccggcctccatctcca 1076

                                                                        
Query: 318  cgaacgcaacgcacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 377
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1075 cgaacgcaacgcacgccgtccccggcttgacgtccaccatcgagttcttcccggtcatcg 1016

                                                             
Query: 378  gccattcacccccgccgtcgagcgccagcaccacgttgggcaccgagta 426
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 cccattcacccccgccgtcgagcgccagcaccacgttgggcaccgagta 967

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>emb|AJ581531.1|SCE581531 Secale cereale partial xi-IV gene for xylanase inhibitor
          Length = 737

 Score =  341 bits (172), Expect = 1e-90
 Identities = 231/252 (91%), Gaps = 9/252 (3%)
 Strand = Plus / Minus

                                                                       
Query: 180 tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 239
           ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 583 tgccgcagcccgtaaagtgcggcagcctggtaaacccgagccgcttcttctccatgtcga 524

                                                                       
Query: 240 agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 299
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 523 agtcgagcacgaagtcctccatctgggcccctccgaggatcaccgccggcgccctgccgt 464

                                                                       
Query: 300 cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 350
           ||||||||||         |||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 463 cgccggcctccgcccccttcatctccacgaacgcaacgcacgccgtccccggcctgacgt 404

                                                                       
Query: 351 ccaccatcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcacca 410
           ||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||  |
Sbjct: 403 ccaccatcgagttcttcccggtcatcgcccactcaccgccgccgtcgagcgccagcagga 344

                       
Query: 411 cgttgggcaccg 422
           ||||||||||||
Sbjct: 343 cgttgggcaccg 332



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 7   caaaagaacttatttatcacatgcagta 34
           ||||||||||||||||| ||| ||||||
Sbjct: 656 caaaagaacttatttattacacgcagta 629

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>emb|AJ697851.1| Triticum aestivum xi-IB gene for xylanase inhibitor precursor, exon 1
          Length = 1206

 Score =  333 bits (168), Expect = 3e-88
 Identities = 233/256 (91%), Gaps = 9/256 (3%)
 Strand = Plus / Minus

                                                                        
Query: 180  tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 239
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1201 tgccgcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcga 1142

                                                                        
Query: 240  agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 299
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1141 agtcgagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgt 1082

                                                                        
Query: 300  cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 350
            ||||||||||         |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1081 cgccggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgt 1022

                                                                        
Query: 351  ccaccatcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcacca 410
            ||||||||||||||||||||||||||| ||| |||| |||||||||||  |||||| | |
Sbjct: 1021 ccaccatcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaa 962

                            
Query: 411  cgttgggcaccgagta 426
            |||| |||||| ||||
Sbjct: 961  cgttcggcacccagta 946

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>emb|AJ581532.1|SCE581532 Secale cereale xi-II/III gene for xylanase inhibitor
          Length = 1245

 Score =  333 bits (168), Expect = 3e-88
 Identities = 230/252 (91%), Gaps = 9/252 (3%)
 Strand = Plus / Minus

                                                                        
Query: 180  tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 239
            ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1191 tgccgcagcccgtaaagtgcggcagcctggtaaacccgagccgcttcttctccatgtcga 1132

                                                                        
Query: 240  agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 299
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1131 agtcgagcacgaagtcctccatctgggcccctccgaggatcaccgccggcgccctgccgt 1072

                                                                        
Query: 300  cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 350
            ||||||||||         ||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1071 cgccggcctccacccccttcatctccacgaacgcgacgcacgccgtccccggcttgacgt 1012

                                                                        
Query: 351  ccaccatcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcacca 410
            ||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||  |
Sbjct: 1011 ccaccatggagttcttcccggtcatggcccactcacccccgccgtcgagcgccagcagga 952

                        
Query: 411  cgttgggcaccg 422
            ||||||||||||
Sbjct: 951  cgttgggcaccg 940

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>dbj|AB178471.1| Triticum aestivum Taxi-III gene for xylanase inhibitor, complete cds,
            upstream region
          Length = 2322

 Score =  333 bits (168), Expect = 3e-88
 Identities = 233/256 (91%), Gaps = 9/256 (3%)
 Strand = Plus / Minus

                                                                        
Query: 180  tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 239
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2277 tgccgcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcga 2218

                                                                        
Query: 240  agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 299
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 2217 agtcgagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgt 2158

                                                                        
Query: 300  cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 350
            ||||||||||         |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2157 cgccggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgt 2098

                                                                        
Query: 351  ccaccatcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcacca 410
            ||||||||||||||||||||||||||| ||| |||| |||||||||||  |||||| | |
Sbjct: 2097 ccaccatcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaa 2038

                            
Query: 411  cgttgggcaccgagta 426
            |||| |||||| ||||
Sbjct: 2037 cgttcggcacccagta 2022

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>dbj|AB114627.1| Triticum aestivum Taxi-III mRNA for xylanase inhibitor TAXI-III,
            complete cds
          Length = 1411

 Score =  333 bits (168), Expect = 3e-88
 Identities = 233/256 (91%), Gaps = 9/256 (3%)
 Strand = Plus / Minus

                                                                        
Query: 180  tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 239
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1280 tgccgcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcga 1221

                                                                        
Query: 240  agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 299
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1220 agtcgagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgt 1161

                                                                        
Query: 300  cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 350
            ||||||||||         |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1160 cgccggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgt 1101

                                                                        
Query: 351  ccaccatcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcacca 410
            ||||||||||||||||||||||||||| ||| |||| |||||||||||  |||||| | |
Sbjct: 1100 ccaccatcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaa 1041

                            
Query: 411  cgttgggcaccgagta 426
            |||| |||||| ||||
Sbjct: 1040 cgttcggcacccagta 1025



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 1    aatgaccaaaagaacttatttatcacatgc 30
            |||| |||||||||||||||||| ||||||
Sbjct: 1377 aatgtccaaaagaacttatttattacatgc 1348

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>emb|AJ697850.1| Triticum aestivum partial xi-IIB gene for xylanase inhibitor
            precursor, exon 1
          Length = 1170

 Score =  317 bits (160), Expect = 2e-83
 Identities = 228/252 (90%), Gaps = 9/252 (3%)
 Strand = Plus / Minus

                                                                        
Query: 184  gcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtc 243
            ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1140 gcaacccgtaaattgcggcagcctgctaaacccgagccgcttcttctccatgtcgaagtc 1081

                                                                        
Query: 244  gagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgcc 303
            |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 1080 gagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgtcgcc 1021

                                                                        
Query: 304  ggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgtccac 354
            ||||||         |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1020 ggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgtccac 961

                                                                        
Query: 355  catcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcaccacgtt 414
            ||||||||||||||||||||||| ||| |||| |||||||||||  |||||| | |||||
Sbjct: 960  catcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaacgtt 901

                        
Query: 415  gggcaccgagta 426
             |||||| ||||
Sbjct: 900  cggcacccagta 889

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>dbj|AB114628.1| Triticum aestivum Taxi-IV mRNA for xylanase inhibitor TAXI-IV,
            complete cds
          Length = 1387

 Score =  317 bits (160), Expect = 2e-83
 Identities = 228/252 (90%), Gaps = 9/252 (3%)
 Strand = Plus / Minus

                                                                        
Query: 184  gcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtc 243
            ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1248 gcaacccgtaaattgcggcagcctgctaaacccgagccgcttcttctccatgtcgaagtc 1189

                                                                        
Query: 244  gagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgcc 303
            |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 1188 gagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgtcgcc 1129

                                                                        
Query: 304  ggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgtccac 354
            ||||||         |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1128 ggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgtccac 1069

                                                                        
Query: 355  catcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcaccacgtt 414
            ||||||||||||||||||||||| ||| |||| |||||||||||  |||||| | |||||
Sbjct: 1068 catcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaacgtt 1009

                        
Query: 415  gggcaccgagta 426
             |||||| ||||
Sbjct: 1008 cggcacccagta 997



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 98   tgtagataaacagacttatta 118
            |||||||||||||||||||||
Sbjct: 1317 tgtagataaacagacttatta 1297

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>emb|AJ581530.1|SCE581530 Secale cereale partial xi-I gene for xylanase inhibitor
          Length = 578

 Score =  315 bits (159), Expect = 6e-83
 Identities = 224/247 (90%), Gaps = 9/247 (3%)
 Strand = Plus / Minus

                                                                       
Query: 185 caacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtcg 244
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 578 caacccgtaaagtgcggcagcctggtaaacccgagccgcttcttctccatgtcgaagtcg 519

                                                                       
Query: 245 agcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgccg 304
           |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct: 518 agcacgaagtcctccatctgtgcccctccgaggatcaccgccggcgccctgccgtcgccg 459

                                                                       
Query: 305 gcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgtccacc 355
           |||||         ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 458 gcctccacccccttcatctccacgaacgcaacgcatgccgtccccggcttgacgtccacc 399

                                                                       
Query: 356 atcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcaccacgttg 415
           |||||||||||||||||||| | ||| || || |||||||||||||||||||  ||||||
Sbjct: 398 atcgagttcttcccggtcatggcccagtccccgccgccgtcgagcgccagcaggacgttg 339

                  
Query: 416 ggcaccg 422
           |||||||
Sbjct: 338 ggcaccg 332

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>dbj|AB114626.1| Triticum aestivum taxi-I mRNA for xylanase inhibitor TAXI-I, complete
            cds
          Length = 1374

 Score =  315 bits (159), Expect = 6e-83
 Identities = 227/251 (90%), Gaps = 9/251 (3%)
 Strand = Plus / Minus

                                                                        
Query: 181  gccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaa 240
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1258 gccgcaacccgtaaagtgcggcagcctgctaaacccgagccgcttcttctccatgtcgaa 1199

                                                                        
Query: 241  gtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtc 300
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 1198 gtcgagcacgaagtcctccatctgggcccctccgaggatcaccgccggcgccctgccgtc 1139

                                                                        
Query: 301  gccgg---------cctccatctccacgaacgcaacgcacgccgtccctggcttgacgtc 351
            |||||         ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1138 gccggccgccactcccttcatctccacgaacgcaacgcacgccgtcccttgcttgacgtc 1079

                                                                        
Query: 352  caccatcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcaccac 411
            |||||||||||||||||||||||||| ||| ||||  ||||| |||||| |||||   ||
Sbjct: 1078 caccatcgagttcttcccggtcatcgtccagtcactgccgccatcgagccccagctggac 1019

                       
Query: 412  gttgggcaccg 422
            |||||||||||
Sbjct: 1018 gttgggcaccg 1008

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>emb|AJ438880.1|TAE438880 Triticum aestivum xiI gene for xylanase inhibitor
          Length = 1298

 Score =  315 bits (159), Expect = 6e-83
 Identities = 227/251 (90%), Gaps = 9/251 (3%)
 Strand = Plus / Minus

                                                                        
Query: 181  gccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaa 240
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1250 gccgcaacccgtaaagtgcggcagcctgctaaacccgagccgcttcttctccatgtcgaa 1191

                                                                        
Query: 241  gtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtc 300
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 1190 gtcgagcacgaagtcctccatctgggcccctccgaggatcaccgccggcgccctgccgtc 1131

                                                                        
Query: 301  gccgg---------cctccatctccacgaacgcaacgcacgccgtccctggcttgacgtc 351
            |||||         ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1130 gccggccgccactcccttcatctccacgaacgcaacgcacgccgtcccttgcttgacgtc 1071

                                                                        
Query: 352  caccatcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcaccac 411
            |||||||||||||||||||||||||| ||| ||||  ||||| |||||| |||||   ||
Sbjct: 1070 caccatcgagttcttcccggtcatcgtccagtcactgccgccatcgagccccagctggac 1011

                       
Query: 412  gttgggcaccg 422
            |||||||||||
Sbjct: 1010 gttgggcaccg 1000

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>emb|AJ697849.1| Triticum aestivum partial xi-IIA gene for xylanase inhibitor
            precursor, exon 1
          Length = 1170

 Score =  285 bits (144), Expect = 6e-74
 Identities = 224/252 (88%), Gaps = 9/252 (3%)
 Strand = Plus / Minus

                                                                        
Query: 184  gcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtc 243
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1140 gcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcgaagtc 1081

                                                                        
Query: 244  gagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgcc 303
            |||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| |||||
Sbjct: 1080 gagcacgaagtcctccatctgggctcctcccaggatcaccgccggcgcactgccatcgcc 1021

                                                                        
Query: 304  gg---------cctccatctccacgaacgcaacgcacgccgtccctggcttgacgtccac 354
            ||         ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1020 ggcatcaacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgtccac 961

                                                                        
Query: 355  catcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcaccacgtt 414
            ||| |||||||||||||||| || ||| |||| ||||||||| ||| ||||||  |||||
Sbjct: 960  cattgagttcttcccggtcagcgcccagtcactcccgccgtcaagctccagcaggacgtt 901

                        
Query: 415  gggcaccgagta 426
            ||||||| ||||
Sbjct: 900  gggcacccagta 889

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>gb|BT009260.1| Triticum aestivum clone wlk4.pk0017.d2:fis, full insert mRNA
           sequence
          Length = 1343

 Score =  278 bits (140), Expect = 1e-71
 Identities = 223/252 (88%), Gaps = 9/252 (3%)
 Strand = Plus / Plus

                                                                       
Query: 184 gcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtc 243
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 148 gcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcgaagtc 207

                                                                       
Query: 244 gagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgcc 303
           |||||||||||||||||||||||| ||||| || |||||||||||||| | ||| |||||
Sbjct: 208 gagcacgaagtcctccatctgggctcctcccagaatcaccgccggcgcactgccatcgcc 267

                                                                       
Query: 304 gg---------cctccatctccacgaacgcaacgcacgccgtccctggcttgacgtccac 354
           ||         ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268 ggcatcaacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgtccac 327

                                                                       
Query: 355 catcgagttcttcccggtcatcggccattcacccccgccgtcgagcgccagcaccacgtt 414
           ||| |||||||||||||||| || ||| |||| ||||||||| ||| ||||||  |||||
Sbjct: 328 cattgagttcttcccggtcagcgcccagtcactcccgccgtcaagctccagcaggacgtt 387

                       
Query: 415 gggcaccgagta 426
           ||||||| ||||
Sbjct: 388 gggcacccagta 399

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>ref|NM_190072.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1260

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 137/169 (81%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 212  aacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcctccatctgggcacct 271
            |||||||||||||||||||||  |||||| |  ||||  | || ||||||||||   |||
Sbjct: 1202 aacccgagccgcttcttctccgagtcgaactgcagcaacatgttctccatctggaaccct 1143

                                                                        
Query: 272  ccgaggatcaccgccggcgccc---cgccgtcgccggcctccatctccacgaacgcaacg 328
            |||||||||||||||||||  |   || ||||||||| || |||||||||||| || | |
Sbjct: 1142 ccgaggatcaccgccggcgaactggcggcgtcgccggacttcatctccacgaaggccagg 1083

                                                             
Query: 329  cacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 377
            |||||| | ||   ||| |||||||||||||||||  |||| |||||||
Sbjct: 1082 cacgccttgccccccttcacgtccaccatcgagttggtccccgtcatcg 1034

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 137/169 (81%), Gaps = 3/169 (1%)
 Strand = Plus / Plus

                                                                            
Query: 212      aacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcctccatctgggcacct 271
                |||||||||||||||||||||  |||||| |  ||||  | || ||||||||||   |||
Sbjct: 41134562 aacccgagccgcttcttctccgagtcgaactgcagcaacatgttctccatctggaaccct 41134621

                                                                            
Query: 272      ccgaggatcaccgccggcgccc---cgccgtcgccggcctccatctccacgaacgcaacg 328
                |||||||||||||||||||  |   || ||||||||| || |||||||||||| || | |
Sbjct: 41134622 ccgaggatcaccgccggcgaactggcggcgtcgccggacttcatctccacgaaggccagg 41134681

                                                                 
Query: 329      cacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 377
                |||||| | ||   ||| |||||||||||||||||  |||| |||||||
Sbjct: 41134682 cacgccttgccccccttcacgtccaccatcgagttggtccccgtcatcg 41134730

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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 137/169 (81%), Gaps = 3/169 (1%)
 Strand = Plus / Plus

                                                                         
Query: 212   aacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcctccatctgggcacct 271
             |||||||||||||||||||||  |||||| |  ||||  | || ||||||||||   |||
Sbjct: 31617 aacccgagccgcttcttctccgagtcgaactgcagcaacatgttctccatctggaaccct 31676

                                                                         
Query: 272   ccgaggatcaccgccggcgccc---cgccgtcgccggcctccatctccacgaacgcaacg 328
             |||||||||||||||||||  |   || ||||||||| || |||||||||||| || | |
Sbjct: 31677 ccgaggatcaccgccggcgaactggcggcgtcgccggacttcatctccacgaaggccagg 31736

                                                              
Query: 329   cacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 377
             |||||| | ||   ||| |||||||||||||||||  |||| |||||||
Sbjct: 31737 cacgccttgccccccttcacgtccaccatcgagttggtccccgtcatcg 31785

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>dbj|AK105806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B07, full
            insert sequence
          Length = 1404

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 137/169 (81%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 212  aacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcctccatctgggcacct 271
            |||||||||||||||||||||  |||||| |  ||||  | || ||||||||||   |||
Sbjct: 1214 aacccgagccgcttcttctccgagtcgaactgcagcaacatgttctccatctggaaccct 1155

                                                                        
Query: 272  ccgaggatcaccgccggcgccc---cgccgtcgccggcctccatctccacgaacgcaacg 328
            |||||||||||||||||||  |   || ||||||||| || |||||||||||| || | |
Sbjct: 1154 ccgaggatcaccgccggcgaactggcggcgtcgccggacttcatctccacgaaggccagg 1095

                                                             
Query: 329  cacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 377
            |||||| | ||   ||| |||||||||||||||||  |||| |||||||
Sbjct: 1094 cacgccttgccccccttcacgtccaccatcgagttggtccccgtcatcg 1046

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 390     cgccgtcgagcgccagcaccacg 412
               |||||||||||||||||||||||
Sbjct: 4534409 cgccgtcgagcgccagcaccacg 4534387

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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 226    cttctccatgtcgaagtcgagc 247
              ||||||||||||||||||||||
Sbjct: 282079 cttctccatgtcgaagtcgagc 282058

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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 215     ccgagccgcttcttctccatgtcgaa 240
               |||||||||||| |||||||||||||
Sbjct: 2572150 ccgagccgcttcgtctccatgtcgaa 2572125

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>ref|XM_838074.1| Leishmania major strain Friedlin SNF-7-like protein (LMJ_0990)
           partial mRNA
          Length = 675

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 226 cttctccatgtcgaagtcgagc 247
           ||||||||||||||||||||||
Sbjct: 525 cttctccatgtcgaagtcgagc 504

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>ref|XM_536297.2| PREDICTED: Canis familiaris similar to monogenic, audiogenic seizure
             susceptibility 1 (LOC479153), mRNA
          Length = 19440

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 66    gttgttattacagggagtgatc 87
             ||||||||||||||||||||||
Sbjct: 16585 gttgttattacagggagtgatc 16606

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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 215    ccgagccgcttcttctccatgtcgaa 240
              |||||||||||| |||||||||||||
Sbjct: 752192 ccgagccgcttcgtctccatgtcgaa 752167

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 215    ccgagccgcttcttctccatgtcgaa 240
              |||||||||||| |||||||||||||
Sbjct: 483119 ccgagccgcttcgtctccatgtcgaa 483094

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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 215     ccgagccgcttcttctccatgtcgaa 240
               |||||||||||| |||||||||||||
Sbjct: 2259372 ccgagccgcttcgtctccatgtcgaa 2259397

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 223     cttcttctccatgtcgaagtcgagcacga 251
               |||||||||||||||||| | ||||||||
Sbjct: 2698865 cttcttctccatgtcgaaatagagcacga 2698837

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 231     ccatgtcgaagtcgagcacg 250
               ||||||||||||||||||||
Sbjct: 2779197 ccatgtcgaagtcgagcacg 2779216

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>gb|AY181039.1| Methylobacterium extorquens enolase (eno) gene, complete cds
          Length = 1290

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gtcgagcgccagcaccacgt 413
           ||||||||||||||||||||
Sbjct: 726 gtcgagcgccagcaccacgt 707

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>ref|XM_649986.1| Entamoeba histolytica HM-1:IMSS patatin-like phospholipase,
           putative (37.t00005) partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttttttctaaaagttcaagt 179
           ||||||||||||||||||||
Sbjct: 79  ttttttctaaaagttcaagt 60

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>emb|AL645817.1| Human DNA sequence from clone RP1-2A2 on chromosome Xq21, complete
             sequence
          Length = 129249

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    aggattgttgttattacagg 79
             ||||||||||||||||||||
Sbjct: 37130 aggattgttgttattacagg 37111

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>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0023F01, complete sequence
          Length = 145009

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    ccccgccgtcgccggcctcc 310
              ||||||||||||||||||||
Sbjct: 138017 ccccgccgtcgccggcctcc 137998

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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
              sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ttttttctaaaagttcaagt 179
              ||||||||||||||||||||
Sbjct: 450927 ttttttctaaaagttcaagt 450908

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 281      accgccggcgccccgccgtcgccg 304
                ||||||| ||||||||||||||||
Sbjct: 13022519 accgccgccgccccgccgtcgccg 13022496

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 291      ccccgccgtcgccggcctcc 310
                ||||||||||||||||||||
Sbjct: 26451703 ccccgccgtcgccggcctcc 26451722

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 272      ccgaggatcaccgccggcgc 291
                ||||||||||||||||||||
Sbjct: 28108458 ccgaggatcaccgccggcgc 28108439

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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0009H10
          Length = 175754

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ccgaggatcaccgccggcgc 291
             ||||||||||||||||||||
Sbjct: 39364 ccgaggatcaccgccggcgc 39345

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>ref|XM_561218.1| Anopheles gambiae str. PEST ENSANGP00000026539 (ENSANGG00000023275),
            partial mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 271  tccgaggatcaccgccggcg 290
            ||||||||||||||||||||
Sbjct: 1057 tccgaggatcaccgccggcg 1076

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>emb|Z84816.1|HS2A2B Human DNA sequence from PAC 2A2 on chromosome X contains ESTs
          Length = 96355

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    aggattgttgttattacagg 79
             ||||||||||||||||||||
Sbjct: 59226 aggattgttgttattacagg 59245

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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ttttttctaaaagttcaagt 179
              ||||||||||||||||||||
Sbjct: 448900 ttttttctaaaagttcaagt 448881

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 291      ccccgccgtcgccggcctcc 310
                ||||||||||||||||||||
Sbjct: 26776967 ccccgccgtcgccggcctcc 26776986

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 281      accgccggcgccccgccgtcgccg 304
                ||||||| ||||||||||||||||
Sbjct: 12976793 accgccgccgccccgccgtcgccg 12976770

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>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 281   accgccggcgccccgccgtcgccg 304
             ||||||| ||||||||||||||||
Sbjct: 45451 accgccgccgccccgccgtcgccg 45474

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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 281   accgccggcgccccgccgtcgccg 304
             ||||||| ||||||||||||||||
Sbjct: 11722 accgccgccgccccgccgtcgccg 11699

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>gb|U55381.1|LTU55381 Leishmania tropica P-glycoprotein E gene, complete cds
          Length = 6316

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 276  ggatcaccgccggcgccccgccgt 299
            ||||||||||||||||| ||||||
Sbjct: 4660 ggatcaccgccggcgccgcgccgt 4637

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>dbj|AB007905.1| Schizosaccharomyces pombe gene for Cad1 protein, complete cds
          Length = 2343

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 120  gtattacaaacgattttattcata 143
            ||||||||||| ||||||||||||
Sbjct: 2090 gtattacaaactattttattcata 2067


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,303,940
Number of Sequences: 3902068
Number of extensions: 3303940
Number of successful extensions: 70869
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69819
Number of HSP's gapped (non-prelim): 1042
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result