Clone Name | rbart21h07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_535708.2| PREDICTED: Canis familiaris similar to Vitamin K-dependent protein S precursor (LOC478529), mRNA Length = 2518 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 aatttacaaccaaaatcaca 66 |||||||||||||||||||| Sbjct: 1097 aatttacaaccaaaatcaca 1116
>emb|AL359378.12| Human DNA sequence from clone RP11-203H2 on chromosome 6 Contains part of a novel gene and the 3' end of a novel gene, complete sequence Length = 100919 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 aaaaagggattcaggctttggtac 113 |||| ||||||||||||||||||| Sbjct: 64369 aaaatgggattcaggctttggtac 64392
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 atttatggaacatgtgcaaa 91 |||||||||||||||||||| Sbjct: 73161 atttatggaacatgtgcaaa 73142
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 atttatggaacatgtgcaaa 91 |||||||||||||||||||| Sbjct: 24513530 atttatggaacatgtgcaaa 24513511
>gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, complete sequence Length = 194103 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 caaaggggaatttgtccctt 25 |||||||||||||||||||| Sbjct: 108624 caaaggggaatttgtccctt 108643
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 atttatggaacatgtgcaaa 91 |||||||||||||||||||| Sbjct: 106852 atttatggaacatgtgcaaa 106833
>ref|XM_633360.1| Dictyostelium discoideum hypothetical protein (DDB0186119), partial mRNA Length = 2103 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 caagatttatggaacatgt 86 ||||||||||||||||||| Sbjct: 146 caagatttatggaacatgt 164
>emb|CR382330.9| Zebrafish DNA sequence from clone CH211-180N24 in linkage group 17, complete sequence Length = 124922 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 ccataatttacaaccaaaa 61 ||||||||||||||||||| Sbjct: 61092 ccataatttacaaccaaaa 61110
>ref|XM_775616.1| PREDICTED: Strongylocentrotus purpuratus similar to Forkhead box protein C2 (Forkhead-related protein FKHL14) (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14) (LOC575199), mRNA Length = 1440 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 aatcacatcaagatttatggaac 82 |||||||||| |||||||||||| Sbjct: 627 aatcacatcacgatttatggaac 605
>emb|BX000348.22| Zebrafish DNA sequence from clone DKEY-94L16 in linkage group 12, complete sequence Length = 158133 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 ctttactcatcatagctgt 41 ||||||||||||||||||| Sbjct: 65904 ctttactcatcatagctgt 65922
>dbj|AK124936.1| Homo sapiens cDNA FLJ42946 fis, clone BRSTN2005721 Length = 1624 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 76 atggaacatgtgcaaaaaaggga 98 |||||| |||||||||||||||| Sbjct: 334 atggaagatgtgcaaaaaaggga 356
>gb|AC110795.4| Homo sapiens BAC clone RP11-628A4 from 4, complete sequence Length = 75296 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 76 atggaacatgtgcaaaaaaggga 98 |||||| |||||||||||||||| Sbjct: 74848 atggaagatgtgcaaaaaaggga 74870
>gb|AC164576.4| Mus musculus 10 BAC RP23-50F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205209 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 aatttacaaccaaaatcac 65 ||||||||||||||||||| Sbjct: 105047 aatttacaaccaaaatcac 105029
>gb|AC034139.7| Homo sapiens BAC clone RP11-67M24 from 4, complete sequence Length = 176411 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 76 atggaacatgtgcaaaaaaggga 98 |||||| |||||||||||||||| Sbjct: 1553 atggaagatgtgcaaaaaaggga 1575
>dbj|AK042634.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730012G10 product:weakly similar to CA2+-DEPENDENT ACTIVATOR PROTEIN [Rattus norvegicus], full insert sequence Length = 2120 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 aaatcacatcaagatttat 77 ||||||||||||||||||| Sbjct: 1830 aaatcacatcaagatttat 1848
>gb|AC153485.9| Mus musculus 10 BAC RP23-319B13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213412 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 aatttacaaccaaaatcac 65 ||||||||||||||||||| Sbjct: 199694 aatttacaaccaaaatcac 199676
>gb|AC107049.6| Homo sapiens BAC clone RP11-163G23 from 4, complete sequence Length = 116703 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 atggaacatgtgcaaaaaa 94 ||||||||||||||||||| Sbjct: 68204 atggaacatgtgcaaaaaa 68186
>emb|BX932377.1| Gallus gallus finished cDNA, clone ChEST98f18 Length = 1435 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 cataatttacaaccaaaat 62 ||||||||||||||||||| Sbjct: 1299 cataatttacaaccaaaat 1317
>emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, complete sequence Length = 205118 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 gtccctttactcatcatag 37 ||||||||||||||||||| Sbjct: 113210 gtccctttactcatcatag 113192
>gb|AC155850.6| Mus musculus 6 BAC RP24-545D3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195675 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 aaatcacatcaagatttat 77 ||||||||||||||||||| Sbjct: 105778 aaatcacatcaagatttat 105796
>gb|AC153831.4| Mus musculus 6 BAC RP23-291M9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202080 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 aaatcacatcaagatttat 77 ||||||||||||||||||| Sbjct: 165875 aaatcacatcaagatttat 165893
>gb|DQ286740.1| Strongylocentrotus purpuratus forkhead transcription factor C (FoxC) mRNA, partial cds Length = 1071 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 aatcacatcaagatttatggaac 82 |||||||||| |||||||||||| Sbjct: 808 aatcacatcacgatttatggaac 786
>emb|AL669939.9| Mouse DNA sequence from clone RP23-213O8 on chromosome X, complete sequence Length = 178116 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 ccataatttacaaccaaaa 61 ||||||||||||||||||| Sbjct: 138744 ccataatttacaaccaaaa 138726 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,154,247 Number of Sequences: 3902068 Number of extensions: 1154247 Number of successful extensions: 81992 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81934 Number of HSP's gapped (non-prelim): 58 length of query: 129 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 108 effective length of database: 17,151,101,840 effective search space: 1852318998720 effective search space used: 1852318998720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)