ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_535708.2| PREDICTED: Canis familiaris similar to Vitamin ... 40 1.5
2emb|AL359378.12| Human DNA sequence from clone RP11-203H2 on chr... 40 1.5
3emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4,... 40 1.5
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
5gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, comple... 40 1.5
6emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4,... 40 1.5
7ref|XM_633360.1| Dictyostelium discoideum hypothetical protein (... 38 6.0
8emb|CR382330.9| Zebrafish DNA sequence from clone CH211-180N24 i... 38 6.0
9ref|XM_775616.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 6.0
10emb|BX000348.22| Zebrafish DNA sequence from clone DKEY-94L16 in... 38 6.0
11dbj|AK124936.1| Homo sapiens cDNA FLJ42946 fis, clone BRSTN2005721 38 6.0
12gb|AC110795.4| Homo sapiens BAC clone RP11-628A4 from 4, complet... 38 6.0
13gb|AC164576.4| Mus musculus 10 BAC RP23-50F14 (Roswell Park Canc... 38 6.0
14gb|AC034139.7| Homo sapiens BAC clone RP11-67M24 from 4, complet... 38 6.0
15dbj|AK042634.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 38 6.0
16gb|AC153485.9| Mus musculus 10 BAC RP23-319B13 (Roswell Park Can... 38 6.0
17gb|AC107049.6| Homo sapiens BAC clone RP11-163G23 from 4, comple... 38 6.0
18emb|BX932377.1| Gallus gallus finished cDNA, clone ChEST98f18 38 6.0
19emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, co... 38 6.0
20gb|AC155850.6| Mus musculus 6 BAC RP24-545D3 (Roswell Park Cance... 38 6.0
21gb|AC153831.4| Mus musculus 6 BAC RP23-291M9 (Roswell Park Cance... 38 6.0
22gb|DQ286740.1| Strongylocentrotus purpuratus forkhead transcript... 38 6.0
23emb|AL669939.9| Mouse DNA sequence from clone RP23-213O8 on chro... 38 6.0

>ref|XM_535708.2| PREDICTED: Canis familiaris similar to Vitamin K-dependent protein S
            precursor (LOC478529), mRNA
          Length = 2518

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   aatttacaaccaaaatcaca 66
            ||||||||||||||||||||
Sbjct: 1097 aatttacaaccaaaatcaca 1116



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>emb|AL359378.12| Human DNA sequence from clone RP11-203H2 on chromosome 6 Contains part
             of a novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 100919

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    aaaaagggattcaggctttggtac 113
             |||| |||||||||||||||||||
Sbjct: 64369 aaaatgggattcaggctttggtac 64392



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>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16,
             complete sequence
          Length = 146313

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    atttatggaacatgtgcaaa 91
             ||||||||||||||||||||
Sbjct: 73161 atttatggaacatgtgcaaa 73142



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 72       atttatggaacatgtgcaaa 91
                ||||||||||||||||||||
Sbjct: 24513530 atttatggaacatgtgcaaa 24513511



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>gb|AC154311.2| Mus musculus BAC clone RP23-359C9 from 16, complete sequence
          Length = 194103

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      caaaggggaatttgtccctt 25
              ||||||||||||||||||||
Sbjct: 108624 caaaggggaatttgtccctt 108643



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>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20,
              complete sequence
          Length = 116983

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     atttatggaacatgtgcaaa 91
              ||||||||||||||||||||
Sbjct: 106852 atttatggaacatgtgcaaa 106833



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>ref|XM_633360.1| Dictyostelium discoideum hypothetical protein (DDB0186119), partial
           mRNA
          Length = 2103

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  caagatttatggaacatgt 86
           |||||||||||||||||||
Sbjct: 146 caagatttatggaacatgt 164



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>emb|CR382330.9| Zebrafish DNA sequence from clone CH211-180N24 in linkage group 17,
             complete sequence
          Length = 124922

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    ccataatttacaaccaaaa 61
             |||||||||||||||||||
Sbjct: 61092 ccataatttacaaccaaaa 61110



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>ref|XM_775616.1| PREDICTED: Strongylocentrotus purpuratus similar to Forkhead box
           protein C2 (Forkhead-related protein FKHL14) (Mesenchyme
           fork head protein 1) (MFH-1 protein) (Transcription
           factor FKH-14) (LOC575199), mRNA
          Length = 1440

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 60  aatcacatcaagatttatggaac 82
           |||||||||| ||||||||||||
Sbjct: 627 aatcacatcacgatttatggaac 605



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>emb|BX000348.22| Zebrafish DNA sequence from clone DKEY-94L16 in linkage group 12,
             complete sequence
          Length = 158133

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ctttactcatcatagctgt 41
             |||||||||||||||||||
Sbjct: 65904 ctttactcatcatagctgt 65922



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>dbj|AK124936.1| Homo sapiens cDNA FLJ42946 fis, clone BRSTN2005721
          Length = 1624

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 76  atggaacatgtgcaaaaaaggga 98
           |||||| ||||||||||||||||
Sbjct: 334 atggaagatgtgcaaaaaaggga 356



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>gb|AC110795.4| Homo sapiens BAC clone RP11-628A4 from 4, complete sequence
          Length = 75296

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 76    atggaacatgtgcaaaaaaggga 98
             |||||| ||||||||||||||||
Sbjct: 74848 atggaagatgtgcaaaaaaggga 74870



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>gb|AC164576.4| Mus musculus 10 BAC RP23-50F14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205209

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     aatttacaaccaaaatcac 65
              |||||||||||||||||||
Sbjct: 105047 aatttacaaccaaaatcac 105029



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>gb|AC034139.7| Homo sapiens BAC clone RP11-67M24 from 4, complete sequence
          Length = 176411

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 76   atggaacatgtgcaaaaaaggga 98
            |||||| ||||||||||||||||
Sbjct: 1553 atggaagatgtgcaaaaaaggga 1575



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>dbj|AK042634.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730012G10 product:weakly similar
            to CA2+-DEPENDENT ACTIVATOR PROTEIN [Rattus norvegicus],
            full insert sequence
          Length = 2120

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 59   aaatcacatcaagatttat 77
            |||||||||||||||||||
Sbjct: 1830 aaatcacatcaagatttat 1848



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>gb|AC153485.9| Mus musculus 10 BAC RP23-319B13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 213412

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     aatttacaaccaaaatcac 65
              |||||||||||||||||||
Sbjct: 199694 aatttacaaccaaaatcac 199676



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>gb|AC107049.6| Homo sapiens BAC clone RP11-163G23 from 4, complete sequence
          Length = 116703

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    atggaacatgtgcaaaaaa 94
             |||||||||||||||||||
Sbjct: 68204 atggaacatgtgcaaaaaa 68186



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>emb|BX932377.1| Gallus gallus finished cDNA, clone ChEST98f18
          Length = 1435

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 44   cataatttacaaccaaaat 62
            |||||||||||||||||||
Sbjct: 1299 cataatttacaaccaaaat 1317



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>emb|AL928674.5| Zebrafish DNA sequence from clone CH211-10E2, complete sequence
          Length = 205118

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     gtccctttactcatcatag 37
              |||||||||||||||||||
Sbjct: 113210 gtccctttactcatcatag 113192



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>gb|AC155850.6| Mus musculus 6 BAC RP24-545D3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 195675

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     aaatcacatcaagatttat 77
              |||||||||||||||||||
Sbjct: 105778 aaatcacatcaagatttat 105796



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>gb|AC153831.4| Mus musculus 6 BAC RP23-291M9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 202080

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     aaatcacatcaagatttat 77
              |||||||||||||||||||
Sbjct: 165875 aaatcacatcaagatttat 165893



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>gb|DQ286740.1| Strongylocentrotus purpuratus forkhead transcription factor C
           (FoxC) mRNA, partial cds
          Length = 1071

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 60  aatcacatcaagatttatggaac 82
           |||||||||| ||||||||||||
Sbjct: 808 aatcacatcacgatttatggaac 786



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>emb|AL669939.9| Mouse DNA sequence from clone RP23-213O8 on chromosome X, complete
              sequence
          Length = 178116

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     ccataatttacaaccaaaa 61
              |||||||||||||||||||
Sbjct: 138744 ccataatttacaaccaaaa 138726


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,154,247
Number of Sequences: 3902068
Number of extensions: 1154247
Number of successful extensions: 81992
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81934
Number of HSP's gapped (non-prelim): 58
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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