ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P3C2B_HUMAN (O00750) Phosphatidylinositol-4-phosphate 3-kinase C... 31 1.3
2RISB2_CAUCR (Q9A8J4) 6,7-dimethyl-8-ribityllumazine synthase 2 (... 29 3.7
3IRBP_MOUSE (P49194) Interphotoreceptor retinoid-binding protein ... 28 6.4
4GALU_SHIFL (P0AEP6) UTP--glucose-1-phosphate uridylyltransferase... 28 8.3
5GALU_ECOLI (P0AEP3) UTP--glucose-1-phosphate uridylyltransferase... 28 8.3
6GALU_ECOL6 (P0AEP4) UTP--glucose-1-phosphate uridylyltransferase... 28 8.3
7GALU_ECO57 (P0AEP5) UTP--glucose-1-phosphate uridylyltransferase... 28 8.3

>P3C2B_HUMAN (O00750) Phosphatidylinositol-4-phosphate 3-kinase C2|
           domain-containing beta polypeptide (EC 2.7.1.154)
           (Phosphoinositide 3-Kinase-C2-beta) (PtdIns-3-kinase C2
           beta) (PI3K-C2beta) (C2-PI3K)
          Length = 1634

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 24/99 (24%), Positives = 45/99 (45%)
 Frame = +2

Query: 110 ALLDSIQLFCNISSLKLSAVSVKPAARRASNSLLQAETSNSGTFDRCHWSTTSAASFSCP 289
           A+LD ++L+CN  +      +  P +R+  + L+Q         + CH++ + A +    
Sbjct: 592 AILDLVELYCNTFNADFQ--TAVPGSRK--HDLVQ---------EACHFARSLAFTVYAT 638

Query: 290 HIR*AESTQT*FRLVILWAVICIDFHMSFTLSRLPRPAC 406
           H           R+ I+WA    DF++S +LS   +  C
Sbjct: 639 H-----------RIPIIWATSYEDFYLSCSLSHGGKELC 666



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>RISB2_CAUCR (Q9A8J4) 6,7-dimethyl-8-ribityllumazine synthase 2 (EC 2.5.1.9)|
           (DMRL synthase 2) (Lumazine synthase 2) (Riboflavin
           synthase 2 beta chain)
          Length = 154

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 310 ALCLSDVRATEGCRGGRRPVAAIESPGVRRLRLQQA 203
           A  LS  R +EG RGG    A +E+ G++R  L QA
Sbjct: 118 AQALSRARVSEGDRGGAAAKACLETIGLKRQLLGQA 153



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>IRBP_MOUSE (P49194) Interphotoreceptor retinoid-binding protein precursor (IRBP)|
            (Interstitial retinol-binding protein)
          Length = 1234

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -2

Query: 384  DRVKDIWKSMQMTAQRMTSRNYVCVLSAYLMCGQLKDAAEVVDQWQRSKV 235
            D V ++W   Q+T +R  S+  V +L++ +  G  ++   ++ +  R+ V
Sbjct: 1115 DSVSELWTHTQLTGERYGSKKSVAILTSGVTAGAAEEFTYIMKRLGRALV 1164



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>GALU_SHIFL (P0AEP6) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)|
           (UDP-glucose pyrophosphorylase) (UDPGP)
           (Alpha-D-glucosyl-1-phosphate uridylyltransferase)
           (Uridine diphosphoglucose pyrophosphorylase)
          Length = 301

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = +1

Query: 133 LLQHQLSKAIRRVGETGGQKSIEQPVAG---------GDVELRDFRSLPLVDDLRGILQL 285
           L Q  L++ IRR  ETG  + + +PVA            VEL    S+P+V    G+++ 
Sbjct: 146 LSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCKGVELAPGESVPMV----GVVEK 201

Query: 286 PAHQIGREHADVVPTSHPLGG 348
           P        ADV P++  + G
Sbjct: 202 P-------KADVAPSNLAIVG 215



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>GALU_ECOLI (P0AEP3) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)|
           (UDP-glucose pyrophosphorylase) (UDPGP)
           (Alpha-D-glucosyl-1-phosphate uridylyltransferase)
           (Uridine diphosphoglucose pyrophosphorylase)
          Length = 301

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = +1

Query: 133 LLQHQLSKAIRRVGETGGQKSIEQPVAG---------GDVELRDFRSLPLVDDLRGILQL 285
           L Q  L++ IRR  ETG  + + +PVA            VEL    S+P+V    G+++ 
Sbjct: 146 LSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCKGVELAPGESVPMV----GVVEK 201

Query: 286 PAHQIGREHADVVPTSHPLGG 348
           P        ADV P++  + G
Sbjct: 202 P-------KADVAPSNLAIVG 215



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>GALU_ECOL6 (P0AEP4) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)|
           (UDP-glucose pyrophosphorylase) (UDPGP)
           (Alpha-D-glucosyl-1-phosphate uridylyltransferase)
           (Uridine diphosphoglucose pyrophosphorylase)
          Length = 301

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = +1

Query: 133 LLQHQLSKAIRRVGETGGQKSIEQPVAG---------GDVELRDFRSLPLVDDLRGILQL 285
           L Q  L++ IRR  ETG  + + +PVA            VEL    S+P+V    G+++ 
Sbjct: 146 LSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCKGVELAPGESVPMV----GVVEK 201

Query: 286 PAHQIGREHADVVPTSHPLGG 348
           P        ADV P++  + G
Sbjct: 202 P-------KADVAPSNLAIVG 215



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>GALU_ECO57 (P0AEP5) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)|
           (UDP-glucose pyrophosphorylase) (UDPGP)
           (Alpha-D-glucosyl-1-phosphate uridylyltransferase)
           (Uridine diphosphoglucose pyrophosphorylase)
          Length = 301

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = +1

Query: 133 LLQHQLSKAIRRVGETGGQKSIEQPVAG---------GDVELRDFRSLPLVDDLRGILQL 285
           L Q  L++ IRR  ETG  + + +PVA            VEL    S+P+V    G+++ 
Sbjct: 146 LSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCKGVELAPGESVPMV----GVVEK 201

Query: 286 PAHQIGREHADVVPTSHPLGG 348
           P        ADV P++  + G
Sbjct: 202 P-------KADVAPSNLAIVG 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,559,187
Number of Sequences: 219361
Number of extensions: 1080867
Number of successful extensions: 3091
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3090
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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