ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
2dbj|AK104379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
3dbj|AK059992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
4ref|NM_193188.1| Oryza sativa (japonica cultivar-group), predic... 242 9e-61
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
6dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
7gb|BT016534.1| Zea mays clone Contig367 mRNA sequence 184 2e-43
8gb|AY104907.1| Zea mays PCO117250 mRNA sequence 184 2e-43
9gb|AC159436.1| Trypanosoma brucei chromosome 5 clone RPCI93-29K2... 44 0.44
10ref|XM_755815.1| Ustilago maydis 521 hypothetical protein (UM047... 44 0.44
11emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chro... 44 0.44
12emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression sit... 44 0.44
13gb|AC015724.9| Homo sapiens chromosome 17, clone RP11-45J24, com... 44 0.44
14gb|AC093427.2| Homo sapiens chromosome 1 clone RP5-1080K5, compl... 44 0.44
15gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Canc... 42 1.7
16dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
17gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 42 1.7
18dbj|AK067610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
19gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.5... 42 1.7
20gb|AC153640.6| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cance... 42 1.7
21gb|AC167172.3| Mus musculus BAC clone RP23-166M7 from chromosome... 40 6.9
22gb|AC163722.6| Mus musculus BAC clone RP23-447O11 from chromosom... 40 6.9
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.9
24gb|AC131672.3| Mus musculus chromosome UNK clone RP23-314O21, co... 40 6.9
25gb|AC146254.2| Pan troglodytes BAC clone CH251-128L22 from Y, co... 40 6.9
26gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete se... 40 6.9
27gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete se... 40 6.9
28gb|AC152407.19| Medicago truncatula clone mth2-77l23, complete s... 40 6.9
29gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's H... 40 6.9
30emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chr... 40 6.9
31emb|BX045613.1|CNS097CX Single read from an extremity of a full-... 40 6.9
32dbj|BS000629.2| Pan troglodytes chromosome Y clone: PTB-194O02, ... 40 6.9
33dbj|BS000552.1| Pan troglodytes chromosome Y clone:PTB-302F24, c... 40 6.9
34gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.9
35gb|AC157978.25| Medicago truncatula clone mth2-47l16, complete s... 40 6.9
36gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.9
37dbj|AK135908.1| Mus musculus in vitro fertilized eggs cDNA, RIKE... 40 6.9
38gb|AC149130.2| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 6.9
39gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-4... 40 6.9
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
41emb|BX005183.9| Zebrafish DNA sequence from clone CH211-136A14 i... 40 6.9
42gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-33... 40 6.9
43dbj|AP000416.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 6.9
44gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, c... 40 6.9
45emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c1... 40 6.9
46gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, comple... 40 6.9
47emb|AL606920.5| Mouse DNA sequence from clone RP23-183J6 on chro... 40 6.9
48emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 40 6.9 
>dbj|AK106208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G04, full
           insert sequence
          Length = 1086

 Score =  244 bits (123), Expect = 2e-61
 Identities = 219/251 (87%)
 Strand = Plus / Minus

                                                                       
Query: 259 gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 318
           ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 891 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 832

                                                                       
Query: 319 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 831 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 772

                                                                       
Query: 379 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 771 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 712

                                                                       
Query: 439 gaagccttgagctcctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 498
           || | |||||||| |||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 711 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 652

                      
Query: 499 ctgtcaagctc 509
           |||||||||||
Sbjct: 651 ctgtcaagctc 641
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>dbj|AK104379.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G12, full
           insert sequence
          Length = 1010

 Score =  244 bits (123), Expect = 2e-61
 Identities = 219/251 (87%)
 Strand = Plus / Minus

                                                                       
Query: 259 gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 318
           ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 835 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 776

                                                                       
Query: 319 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 775 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 716

                                                                       
Query: 379 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 715 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 656

                                                                       
Query: 439 gaagccttgagctcctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 498
           || | |||||||| |||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 655 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 596

                      
Query: 499 ctgtcaagctc 509
           |||||||||||
Sbjct: 595 ctgtcaagctc 585
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>dbj|AK059992.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C04, full
           insert sequence
          Length = 1014

 Score =  244 bits (123), Expect = 2e-61
 Identities = 219/251 (87%)
 Strand = Plus / Minus

                                                                       
Query: 259 gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 318
           ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 837 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 778

                                                                       
Query: 319 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 777 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 718

                                                                       
Query: 379 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 717 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 658

                                                                       
Query: 439 gaagccttgagctcctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 498
           || | |||||||| |||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 657 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 598

                      
Query: 499 ctgtcaagctc 509
           |||||||||||
Sbjct: 597 ctgtcaagctc 587
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>ref|NM_193188.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score =  242 bits (122), Expect = 9e-61
 Identities = 212/242 (87%)
 Strand = Plus / Minus

                                                                       
Query: 268 gatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtcaatggctccc 327
           ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||| ||
Sbjct: 839 gatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtcaattgctgcc 780

                                                                       
Query: 328 tgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcgttc 387
           || ||||||||||||| ||||||  |||||||||||| || ||||||||| |||| ||||
Sbjct: 779 tggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggtgatgtgttc 720

                                                                       
Query: 388 atgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagccttg 447
           || || || || ||||| |||||||| |||||||||||||||| ||| ||||| | ||||
Sbjct: 719 ataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgccagatgacttg 660

                                                                       
Query: 448 agctcctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaactgtcaagc 507
           |||| |||||||| ||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 659 agcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaactgtcaagc 600

             
Query: 508 tc 509
           ||
Sbjct: 599 tc 598
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  190 bits (96), Expect = 3e-45
 Identities = 183/212 (86%)
 Strand = Plus / Minus

                                                                            
Query: 259      gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 318
                ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 19135808 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 19135749

                                                                            
Query: 319      atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
                || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 19135748 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 19135689

                                                                            
Query: 379      gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
                |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 19135688 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 19135629

                                                
Query: 439      gaagccttgagctcctcctccaacgacttggc 470
                || | |||||||| |||||||| |||||||||
Sbjct: 19135628 gatgacttgagcttctcctccagcgacttggc 19135597



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 478      acatctgcaaatccaacaaaactgtcaagctc 509
                ||||||||||||||||||||||||||||||||
Sbjct: 19135310 acatctgcaaatccaacaaaactgtcaagctc 19135279



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 232     attcagagaaccatatggatg 252
               |||||||||||||||||||||
Sbjct: 9273040 attcagagaaccatatggatg 9273060
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>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0702H08
          Length = 166899

 Score =  190 bits (96), Expect = 3e-45
 Identities = 183/212 (86%)
 Strand = Plus / Minus

                                                                          
Query: 259    gctcatgcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtca 318
              ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 101225 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 101166

                                                                          
Query: 319    atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
              || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 101165 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 101106

                                                                          
Query: 379    gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
              |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 101105 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 101046

                                              
Query: 439    gaagccttgagctcctcctccaacgacttggc 470
              || | |||||||| |||||||| |||||||||
Sbjct: 101045 gatgacttgagcttctcctccagcgacttggc 101014



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                              
Query: 478    acatctgcaaatccaacaaaactgtcaagctc 509
              ||||||||||||||||||||||||||||||||
Sbjct: 100727 acatctgcaaatccaacaaaactgtcaagctc 100696
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>gb|BT016534.1| Zea mays clone Contig367 mRNA sequence
          Length = 1037

 Score =  184 bits (93), Expect = 2e-43
 Identities = 207/245 (84%)
 Strand = Plus / Minus

                                                                       
Query: 265 gcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtcaatggct 324
           |||||||| ||||| |||||||||||||  |||||||| ||||| |||||||| | ||||
Sbjct: 867 gcagatccgaggaaccggcccatccaagaagagaagcgagaccaggccaggtcgacggct 808

                                                                       
Query: 325 ccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcg 384
            |||| ||||||||||||| |||||| |||||| |||||| ||| ||||||||||| | |
Sbjct: 807 tcctggttctcatcagtcagacccatccccttcttcctcttgagtgcctcaggcgaagtg 748

                                                                       
Query: 385 ttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagcc 444
           ||||||||||| || || ||||||||||||||||| ||||||| ||  |  || ||||  
Sbjct: 747 ttcatgaaggcatgcgaacatccagggtatatgtgaacttcatatggtatcccggaagat 688

                                                                       
Query: 445 ttgagctcctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaactgtca 504
           ||||||| ||||||||  |||||||| || || ||||||| ||| |||||||||||||||
Sbjct: 687 ttgagcttctcctccagggacttggctgcagtgacatctgaaaaaccaacaaaactgtca 628

                
Query: 505 agctc 509
            ||||
Sbjct: 627 tgctc 623
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>gb|AY104907.1| Zea mays PCO117250 mRNA sequence
          Length = 1130

 Score =  184 bits (93), Expect = 2e-43
 Identities = 207/245 (84%)
 Strand = Plus / Minus

                                                                       
Query: 265 gcagatcccaggaaacggcccatccaagtggagaagcgggaccatgccaggtcaatggct 324
           |||||||| ||||| |||||||||||||  |||||||| ||||| |||||||| | ||||
Sbjct: 880 gcagatccgaggaaccggcccatccaagaagagaagcgagaccaggccaggtcgacggct 821

                                                                       
Query: 325 ccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcg 384
            |||| ||||||||||||| |||||| |||||| |||||| ||| ||||||||||| | |
Sbjct: 820 tcctggttctcatcagtcagacccatccccttcttcctcttgagtgcctcaggcgaagtg 761

                                                                       
Query: 385 ttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagcc 444
           ||||||||||| || || ||||||||||||||||| ||||||| ||  |  || ||||  
Sbjct: 760 ttcatgaaggcatgcgaacatccagggtatatgtgaacttcatatggtatcccggaagat 701

                                                                       
Query: 445 ttgagctcctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaactgtca 504
           ||||||| ||||||||  |||||||| || || ||||||| ||| |||||||||||||||
Sbjct: 700 ttgagcttctcctccagggacttggctgcagtgacatctgaaaaaccaacaaaactgtca 641

                
Query: 505 agctc 509
            ||||
Sbjct: 640 tgctc 636
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>gb|AC159436.1| Trypanosoma brucei chromosome 5 clone RPCI93-29K2, complete sequence
          Length = 135147

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 56   ccttccctggagatattccatc 77
            ||||||||||||||||||||||
Sbjct: 2237 ccttccctggagatattccatc 2216
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>ref|XM_755815.1| Ustilago maydis 521 hypothetical protein (UM04761.1) partial mRNA
          Length = 774

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 445 ttgagctcctcctccaacgacttggc 470
           |||| |||||||||||||||||||||
Sbjct: 407 ttgaactcctcctccaacgacttggc 382
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>emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chromosome 13q13.3-14.3
             Contains a guanine nucleotide binding protein (G protein),
             gamma 5 (GNG5) pseudogene, complete sequence
          Length = 70126

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 257   ttgctcatgcagatcccaggaaacggccca 286
             |||||| ||||||||||||||||| |||||
Sbjct: 64827 ttgctcctgcagatcccaggaaacagccca 64856
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>emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression site BAC
          Length = 123706

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 56    ccttccctggagatattccatc 77
             ||||||||||||||||||||||
Sbjct: 25527 ccttccctggagatattccatc 25548
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>gb|AC015724.9| Homo sapiens chromosome 17, clone RP11-45J24, complete sequence
          Length = 189055

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 226    tacatcattcagagaaccatat 247
              ||||||||||||||||||||||
Sbjct: 106483 tacatcattcagagaaccatat 106504
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>gb|AC093427.2| Homo sapiens chromosome 1 clone RP5-1080K5, complete sequence
          Length = 131877

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 90    aaccacaaccacaacacaacacaaaa 115
             |||||||||||||||| |||||||||
Sbjct: 67258 aaccacaaccacaacaaaacacaaaa 67283
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>gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162415

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    gtttatgtgacgtgttcagaa 43
             |||||||||||||||||||||
Sbjct: 21329 gtttatgtgacgtgttcagaa 21349
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>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0667A10
          Length = 152237

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 232   attcagagaaccatatggatg 252
             |||||||||||||||||||||
Sbjct: 49634 attcagagaaccatatggatg 49654
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 429     tgccactccagaagccttgag 449
               |||||||||||||||||||||
Sbjct: 2567360 tgccactccagaagccttgag 2567340
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>dbj|AK067610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112F12, full
            insert sequence
          Length = 2264

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 232  attcagagaaccatatggatg 252
            |||||||||||||||||||||
Sbjct: 2100 attcagagaaccatatggatg 2080
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>gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.58_E_17, complete sequence
          Length = 286758

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    acccatgcccttcctcctctc 365
              |||||||||||||||||||||
Sbjct: 155183 acccatgcccttcctcctctc 155163
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>gb|AC153640.6| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208897

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 345   acccatgcccttcctcctctc 365
             |||||||||||||||||||||
Sbjct: 44461 acccatgcccttcctcctctc 44481
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>gb|AC167172.3| Mus musculus BAC clone RP23-166M7 from chromosome 3, complete sequence
          Length = 204419

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     taaccacaaccacaacacaa 108
              ||||||||||||||||||||
Sbjct: 100806 taaccacaaccacaacacaa 100825
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>gb|AC163722.6| Mus musculus BAC clone RP23-447O11 from chromosome 19, complete
             sequence
          Length = 178562

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   cccatgcccttcctcctctc 365
             ||||||||||||||||||||
Sbjct: 80775 cccatgcccttcctcctctc 80794
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     tgagctgactgacagacacc 222
               ||||||||||||||||||||
Sbjct: 7276375 tgagctgactgacagacacc 7276356
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>gb|AC131672.3| Mus musculus chromosome UNK clone RP23-314O21, complete sequence
          Length = 199837

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    tctgagctgactgacagaca 220
              ||||||||||||||||||||
Sbjct: 192476 tctgagctgactgacagaca 192457
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>gb|AC146254.2| Pan troglodytes BAC clone CH251-128L22 from Y, complete sequence
          Length = 177240

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    gtgttcagaagtgtttcatt 53
             ||||||||||||||||||||
Sbjct: 43736 gtgttcagaagtgtttcatt 43755
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>gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete sequence
          Length = 104336

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   catctgcaaatccaacaaaa 498
             ||||||||||||||||||||
Sbjct: 28075 catctgcaaatccaacaaaa 28094
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>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence
          Length = 117358

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   catctgcaaatccaacaaaa 498
             ||||||||||||||||||||
Sbjct: 94025 catctgcaaatccaacaaaa 94006
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>gb|AC152407.19| Medicago truncatula clone mth2-77l23, complete sequence
          Length = 113470

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   catctgcaaatccaacaaaa 498
             ||||||||||||||||||||
Sbjct: 20365 catctgcaaatccaacaaaa 20384
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>gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228433

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     accacaaccacaacacaaca 110
              ||||||||||||||||||||
Sbjct: 129673 accacaaccacaacacaaca 129692
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>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a
              novel gene and a CpG island, complete sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    ccagacattttattcttctg 204
              ||||||||||||||||||||
Sbjct: 176645 ccagacattttattcttctg 176626
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>emb|BX045613.1|CNS097CX Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC19DD11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 782

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  acaaccacaacacaacacaa 113
           ||||||||||||||||||||
Sbjct: 140 acaaccacaacacaacacaa 121
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>dbj|BS000629.2| Pan troglodytes chromosome Y clone: PTB-194O02, complete sequence
          Length = 184689

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     gtgttcagaagtgtttcatt 53
              ||||||||||||||||||||
Sbjct: 109378 gtgttcagaagtgtttcatt 109397
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>dbj|BS000552.1| Pan troglodytes chromosome Y clone:PTB-302F24, complete sequences
          Length = 157728

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     gtgttcagaagtgtttcatt 53
              ||||||||||||||||||||
Sbjct: 100716 gtgttcagaagtgtttcatt 100697
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       gtgttcagaagtgtttcatt 53
                ||||||||||||||||||||
Sbjct: 18032323 gtgttcagaagtgtttcatt 18032304
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>gb|AC157978.25| Medicago truncatula clone mth2-47l16, complete sequence
          Length = 125021

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   catctgcaaatccaacaaaa 498
             ||||||||||||||||||||
Sbjct: 80937 catctgcaaatccaacaaaa 80918
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>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tgagctgactgacagacacc 222
             ||||||||||||||||||||
Sbjct: 27631 tgagctgactgacagacacc 27612
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>dbj|AK135908.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420436A12
            product:unclassifiable, full insert sequence
          Length = 3733

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   accacaaccacaacacaacacaaa 114
            ||||||||||||||| ||||||||
Sbjct: 3361 accacaaccacaacaaaacacaaa 3384
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>gb|AC149130.2| Medicago truncatula chromosome 2 BAC clone mth2-193n2, complete
             sequence
          Length = 132313

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ccacaaccacaacacaacac 111
             ||||||||||||||||||||
Sbjct: 66862 ccacaaccacaacacaacac 66881
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>gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-44o11, complete
             sequence
          Length = 126437

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    ccacaaccacaacacaacac 111
             ||||||||||||||||||||
Sbjct: 32924 ccacaaccacaacacaacac 32905
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     tgagctgactgacagacacc 222
               ||||||||||||||||||||
Sbjct: 7274270 tgagctgactgacagacacc 7274251
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>emb|BX005183.9| Zebrafish DNA sequence from clone CH211-136A14 in linkage group 3,
             complete sequence
          Length = 168366

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   aaatccaacaaaactgtcaa 505
             ||||||||||||||||||||
Sbjct: 53125 aaatccaacaaaactgtcaa 53106
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>gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-338F18, complete sequence
          Length = 169903

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   ccagacattttattcttctg 204
             ||||||||||||||||||||
Sbjct: 25189 ccagacattttattcttctg 25170
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>dbj|AP000416.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLE3
          Length = 3059

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 catctgcaaatccaacaaaa 498
           ||||||||||||||||||||
Sbjct: 725 catctgcaaatccaacaaaa 706
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>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence
          Length = 148280

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    gtgttcagaagtgtttcatt 53
             ||||||||||||||||||||
Sbjct: 70380 gtgttcagaagtgtttcatt 70361
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>emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE
          Length = 136068

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ccacaaccacaacacaacac 111
             ||||||||||||||||||||
Sbjct: 33011 ccacaaccacaacacaacac 33030
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>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence
          Length = 179732

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 91    accacaaccacaacacaacacaaa 114
             ||||||||||||||| ||||||||
Sbjct: 27998 accacaaccacaacaaaacacaaa 27975
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>emb|AL606920.5| Mouse DNA sequence from clone RP23-183J6 on chromosome 3, complete
             sequence
          Length = 89297

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    taaccacaaccacaacacaa 108
             ||||||||||||||||||||
Sbjct: 86079 taaccacaaccacaacacaa 86060
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>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
              sequence
          Length = 205589

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 200    ttctgagctgactgacagacacca 223
              |||||||||||| |||||||||||
Sbjct: 142386 ttctgagctgacagacagacacca 142409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,873,635
Number of Sequences: 3902068
Number of extensions: 4873635
Number of successful extensions: 99431
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99180
Number of HSP's gapped (non-prelim): 249
length of query: 509
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 487
effective length of database: 17,147,199,772
effective search space: 8350686288964
effective search space used: 8350686288964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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