Clone Information

BLAST Search Result

Clone Name	rbart21g10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY596527.1\| Saccharum officinarum clone SCCCLB1004G11, comple...	117	3e-23
2	ref\|NM_187710.1\| Oryza sativa (japonica cultivar-group), predic...	88	3e-14
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
4	dbj\|AP003631.3\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
5	dbj\|AK122051.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	3e-14
6	dbj\|AK104205.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	3e-14
7	dbj\|AK071713.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	3e-14
8	dbj\|AK060908.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	3e-14
9	dbj\|AP003018.2\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
10	gb\|AY105930.1\| Zea mays PCO135569 mRNA sequence	72	2e-09
11	gb\|BT017158.1\| Zea mays clone EL01N0368A12.c mRNA sequence	70	7e-09
12	gb\|DQ284493.1\| Solanum tuberosum clone 050G10 transcription fact...	54	4e-04
13	gb\|BC049182.1\| Mus musculus hairless, mRNA (cDNA clone MGC:54518...	42	1.5
14	gb\|BC040241.1\| Homo sapiens WD repeat domain 41, mRNA (cDNA clon...	42	1.5
15	ref\|XM_797853.1\| Trypanosoma cruzi strain CL Brener hypothetical...	42	1.5
16	gb\|AC122268.5\| Mus musculus BAC clone RP23-216B15 from 14, compl...	42	1.5
17	ref\|NM_021877.2\| Mus musculus hairless (Hr), mRNA	42	1.5
18	emb\|AL834138.1\|HSM805349 Homo sapiens mRNA; cDNA DKFZp434J2114 (...	42	1.5
19	emb\|CR625903.1\| full-length cDNA clone CS0DM014YF08 of Fetal liv...	42	1.5
20	emb\|CR616409.1\| full-length cDNA clone CS0DL008YJ03 of B cells (...	42	1.5
21	dbj\|AK023977.1\| Homo sapiens cDNA FLJ13915 fis, clone Y79AA10003...	42	1.5
22	dbj\|AK021855.1\| Homo sapiens cDNA FLJ11793 fis, clone HEMBA10061...	42	1.5
23	dbj\|AK001766.1\| Homo sapiens cDNA FLJ10904 fis, clone OVARC10000...	42	1.5
24	ref\|NM_018268.2\| Homo sapiens WD repeat domain 41 (WDR41), mRNA	42	1.5
25	gb\|AC022422.5\| Homo sapiens chromosome 5 clone CTD-2199L4, compl...	42	1.5
26	dbj\|AK076280.1\| Mus musculus 0 day neonate skin cDNA, RIKEN full...	42	1.5
27	gb\|DQ000563.1\| Synthetic construct clone PSF:109395 DKFZp434J211...	42	1.5
28	gb\|AC154563.2\| Mus musculus BAC clone RP23-401E22 from chromosom...	42	1.5
29	gb\|AC010234.5\|AC010234 Homo sapiens chromosome 5 clone CTC-337B1...	42	1.5
30	gb\|AF115511.1\| Homo sapiens MSTP048 (MST048) mRNA, complete cds	42	1.5
31	dbj\|AB019228.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	1.5
32	gb\|BC001807.1\| Homo sapiens cDNA clone IMAGE:3354734, containing...	42	1.5
33	gb\|AC136224.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
34	gb\|AC135242.6\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
35	ref\|XM_760984.1\| Theileria parva strain Muguga chromosome 1 hypo...	40	6.0
36	emb\|AL512283.12\| Human DNA sequence from clone RP11-95G17 on chr...	40	6.0
37	emb\|AL138726.12\| Human DNA sequence from clone RP1-139G21 on chr...	40	6.0
38	emb\|AL023693.25\|HS32B1 Human DNA sequence from clone RP1-32B1 on...	40	6.0
39	emb\|AL604031.10\| Mouse DNA sequence from clone RP23-24O5 on chro...	40	6.0
40	gb\|AC117445.12\| Homo sapiens 3 BAC RP11-278A4 (Roswell Park Canc...	40	6.0
41	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
42	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
43	dbj\|AP000837.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
44	emb\|AL935163.7\| Zebrafish DNA sequence from clone CH211-206K20, ...	40	6.0
45	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
46	gb\|U14378.1\|RCU14378 Rana catesbeiana myosin II nonmuscle clone ...	40	6.0

>gb|AY596527.1| Saccharum officinarum clone SCCCLB1004G11, complete sequence
          Length = 1189

 Score =  117 bits (59), Expect = 3e-23
 Identities = 122/143 (85%)
 Strand = Plus / Plus

                                                                       
Query: 304 tcctcgtcctggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacg 363
           ||||| |||||||||||||  ||||| |||||||| |||||||| ||||||||||| |  
Sbjct: 325 tcctcatcctggtgagcaaacttcttgcgcaacaccttctcaaactcaatcttttcaaga 384

                                                                       
Query: 364 ggcttggcattctcaacagcgtgtgccttggctaagttggaatagttggcagccgactcc 423
           ||||||||||||||| |||| || |||||||  |   |||||||||||||||| ||||||
Sbjct: 385 ggcttggcattctcatcagcatgcgccttggacagactggaatagttggcagctgactcc 444

                                  
Query: 424 gctataaaagcaatctcctcatc 446
           || |||||||| ||||| |||||
Sbjct: 445 gcaataaaagcgatctcgtcatc 467



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 75  gaagtgcatggtcagctttagaacattgctcgacccaaaattattg 120
           ||||||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct: 89  gaagtgcatggccagctttataacatcgctcgacccaagattattg 134

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>ref|NM_187710.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 774

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                       
Query: 253 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 312
           |||| |||||| ||||  || |||||||| ||||||| ||| ||| |||||||||| |||
Sbjct: 755 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 696

                                                                       
Query: 313 tggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttggca 372
           |||||||||   ||||| || ||||  |||||||| ||| ||||||| || |||||||||
Sbjct: 695 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 636

                               
Query: 373 ttctcaacagcgtgtgcctt 392
           |||||| |||| || |||||
Sbjct: 635 ttctcagcagcatgggcctt 616

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                            
Query: 253      ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 312
                |||| |||||| ||||  || |||||||| ||||||| ||| ||| |||||||||| |||
Sbjct: 10121590 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 10121531

                                                                            
Query: 313      tggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttggca 372
                |||||||||   ||||| || ||||  |||||||| ||| ||||||| || |||||||||
Sbjct: 10121530 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 10121471

                                    
Query: 373      ttctcaacagcgtgtgcctt 392
                |||||| |||| || |||||
Sbjct: 10121470 ttctcagcagcatgggcctt 10121451



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 54       aacatatggaatacagaaactgaagtgcatggtcagctttagaacattgctcgacccaaa 113
                |||||||||||||||||||  ||||| ||||| ||||||| | ||| |||||||||||||
Sbjct: 10121795 aacatatggaatacagaaaacgaagtacatggccagcttttgcacaatgctcgacccaaa 10121736

                       
Query: 114      attattg 120
                |||||||
Sbjct: 10121735 attattg 10121729



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 338     ctttctcaaaatcaatcttt 357
               ||||||||||||||||||||
Sbjct: 9481999 ctttctcaaaatcaatcttt 9482018

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>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0581F09
          Length = 154248

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                         
Query: 253   ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 312
             |||| |||||| ||||  || |||||||| ||||||| ||| ||| |||||||||| |||
Sbjct: 69059 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 69000

                                                                         
Query: 313   tggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttggca 372
             |||||||||   ||||| || ||||  |||||||| ||| ||||||| || |||||||||
Sbjct: 68999 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 68940

                                 
Query: 373   ttctcaacagcgtgtgcctt 392
             |||||| |||| || |||||
Sbjct: 68939 ttctcagcagcatgggcctt 68920



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 54    aacatatggaatacagaaactgaagtgcatggtcagctttagaacattgctcgacccaaa 113
             |||||||||||||||||||  ||||| ||||| ||||||| | ||| |||||||||||||
Sbjct: 69264 aacatatggaatacagaaaacgaagtacatggccagcttttgcacaatgctcgacccaaa 69205

                    
Query: 114   attattg 120
             |||||||
Sbjct: 69204 attattg 69198

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>dbj|AK122051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114G12, full
           insert sequence
          Length = 1036

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                       
Query: 253 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 312
           |||| |||||| ||||  || |||||||| ||||||| ||| ||| |||||||||| |||
Sbjct: 872 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 813

                                                                       
Query: 313 tggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttggca 372
           |||||||||   ||||| || ||||  |||||||| ||| ||||||| || |||||||||
Sbjct: 812 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 753

                               
Query: 373 ttctcaacagcgtgtgcctt 392
           |||||| |||| || |||||
Sbjct: 752 ttctcagcagcatgggcctt 733



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  tgctcgacccaaaattattg 120
            ||||||||||||||||||||
Sbjct: 1030 tgctcgacccaaaattattg 1011

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>dbj|AK104205.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-F03, full
           insert sequence
          Length = 1086

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                       
Query: 253 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 312
           |||| |||||| ||||  || |||||||| ||||||| ||| ||| |||||||||| |||
Sbjct: 922 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 863

                                                                       
Query: 313 tggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttggca 372
           |||||||||   ||||| || ||||  |||||||| ||| ||||||| || |||||||||
Sbjct: 862 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 803

                               
Query: 373 ttctcaacagcgtgtgcctt 392
           |||||| |||| || |||||
Sbjct: 802 ttctcagcagcatgggcctt 783



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  tgctcgacccaaaattattg 120
            ||||||||||||||||||||
Sbjct: 1080 tgctcgacccaaaattattg 1061

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>dbj|AK071713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109L19, full
           insert sequence
          Length = 1156

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                       
Query: 253 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 312
           |||| |||||| ||||  || |||||||| ||||||| ||| ||| |||||||||| |||
Sbjct: 914 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 855

                                                                       
Query: 313 tggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttggca 372
           |||||||||   ||||| || ||||  |||||||| ||| ||||||| || |||||||||
Sbjct: 854 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 795

                               
Query: 373 ttctcaacagcgtgtgcctt 392
           |||||| |||| || |||||
Sbjct: 794 ttctcagcagcatgggcctt 775



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                        
Query: 54   aacatatggaatacagaaactgaagtgcatggtcagctttagaacattgctcgacccaaa 113
            |||||||||||||||||||  ||||| ||||| ||||||| | ||| |||||||||||||
Sbjct: 1119 aacatatggaatacagaaaacgaagtacatggccagcttttgcacaatgctcgacccaaa 1060

                   
Query: 114  attattg 120
            |||||||
Sbjct: 1059 attattg 1053

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>dbj|AK060908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F08, full
           insert sequence
          Length = 1086

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                       
Query: 253 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 312
           |||| |||||| ||||  || |||||||| ||||||| ||| ||| |||||||||| |||
Sbjct: 922 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 863

                                                                       
Query: 313 tggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttggca 372
           |||||||||   ||||| || ||||  |||||||| ||| ||||||| || |||||||||
Sbjct: 862 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 803

                               
Query: 373 ttctcaacagcgtgtgcctt 392
           |||||| |||| || |||||
Sbjct: 802 ttctcagcagcatgggcctt 783



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  tgctcgacccaaaattattg 120
            ||||||||||||||||||||
Sbjct: 1080 tgctcgacccaaaattattg 1061

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>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004B13
          Length = 142268

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                         
Query: 253   ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 312
             |||| |||||| ||||  || |||||||| ||||||| ||| ||| |||||||||| |||
Sbjct: 46189 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 46130

                                                                         
Query: 313   tggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttggca 372
             |||||||||   ||||| || ||||  |||||||| ||| ||||||| || |||||||||
Sbjct: 46129 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 46070

                                 
Query: 373   ttctcaacagcgtgtgcctt 392
             |||||| |||| || |||||
Sbjct: 46069 ttctcagcagcatgggcctt 46050



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 54    aacatatggaatacagaaactgaagtgcatggtcagctttagaacattgctcgacccaaa 113
             |||||||||||||||||||  ||||| ||||| ||||||| | ||| |||||||||||||
Sbjct: 46394 aacatatggaatacagaaaacgaagtacatggccagcttttgcacaatgctcgacccaaa 46335

                    
Query: 114   attattg 120
             |||||||
Sbjct: 46334 attattg 46328

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>gb|AY105930.1| Zea mays PCO135569 mRNA sequence
          Length = 1279

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 96/116 (82%)
 Strand = Plus / Minus

                                                                       
Query: 310 tcctggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacgggcttg 369
           |||||||||||||  ||||| | |||||| |||||||| ||||||||||| |  || |||
Sbjct: 838 tcctggtgagcaaacttcttgcccaacaccttctcaaactcaatcttttcaagaggtttg 779

                                                                   
Query: 370 gcattctcaacagcgtgtgccttggctaagttggaatagttggcagccgactccgc 425
           ||||||||| |||| ||  ||||||  |  ||||||||||||||||| || |||||
Sbjct: 778 gcattctcagcagcatggaccttggacagattggaatagttggcagctgattccgc 723



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 75   gaagtgcatggtcagctttagaacattgctcgacccaaaattattg 120
            ||||||||||| |||||||| ||||| |||||| |||| |||||||
Sbjct: 1071 gaagtgcatggccagctttataacatcgctcgatccaagattattg 1026

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>gb|BT017158.1| Zea mays clone EL01N0368A12.c mRNA sequence
          Length = 1060

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 116/143 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 tcctcgtcctggtgagcaactttcttccgcaacactttctcaaaatcaatcttttccacg 363
           ||||| |||||||||||||  ||||| || ||||| |||||||| ||||||||||| |  
Sbjct: 800 tcctcatcctggtgagcaaacttcttgcgtaacaccttctcaaactcaatcttttcaaga 741

                                                                       
Query: 364 ggcttggcattctcaacagcgtgtgccttggctaagttggaatagttggcagccgactcc 423
           ||||||||||||||  |||| ||  ||||||  |  ||||||||||||| ||| || |||
Sbjct: 740 ggcttggcattctcggcagcatgcaccttggacagattggaatagttggaagctgattcc 681

                                  
Query: 424 gctataaaagcaatctcctcatc 446
           |  ||||| || ||||| |||||
Sbjct: 680 gtgataaatgcgatctcgtcatc 658



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 75   gaagtgcatggtcagctttagaacattgctcgacccaaaattattg 120
            ||||||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct: 1035 gaagtgcatggccagctttataacatcgctcgacccaagattattg 990

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>gb|DQ284493.1| Solanum tuberosum clone 050G10 transcription factor APFI-like mRNA,
           complete cds
          Length = 1260

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 304 tcctcgtcctggtgagcaactttcttccgcaacactttctcaaaatcaatc 354
           |||||||| | | |||||| ||||||||||||||| |||||||| ||||||
Sbjct: 723 tcctcgtctttgcgagcaaatttcttccgcaacaccttctcaaattcaatc 673

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>gb|BC049182.1| Mus musculus hairless, mRNA (cDNA clone MGC:54518 IMAGE:6468299),
            complete cds
          Length = 5599

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 287  caagcatggaaccgtgttcctcgtcctgg 315
            |||||| |||||| |||||||||||||||
Sbjct: 4372 caagcagggaaccttgttcctcgtcctgg 4400

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>gb|BC040241.1| Homo sapiens WD repeat domain 41, mRNA (cDNA clone MGC:5405
            IMAGE:3447269), complete cds
          Length = 2356

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1418 aatttttgaaataatcttaaactgc 1394

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>ref|XM_797853.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510153.10) partial mRNA
          Length = 1638

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 310 tcctggtgagcaactttcttc 330
           |||||||||||||||||||||
Sbjct: 833 tcctggtgagcaactttcttc 813

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>gb|AC122268.5| Mus musculus BAC clone RP23-216B15 from 14, complete sequence
          Length = 207136

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 287    caagcatggaaccgtgttcctcgtcctgg 315
              |||||| |||||| |||||||||||||||
Sbjct: 196756 caagcagggaaccttgttcctcgtcctgg 196784

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>ref|NM_021877.2| Mus musculus hairless (Hr), mRNA
          Length = 5599

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 287  caagcatggaaccgtgttcctcgtcctgg 315
            |||||| |||||| |||||||||||||||
Sbjct: 4372 caagcagggaaccttgttcctcgtcctgg 4400

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>emb|AL834138.1|HSM805349 Homo sapiens mRNA; cDNA DKFZp434J2114 (from clone DKFZp434J2114)
          Length = 3327

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 2347 aatttttgaaataatcttaaactgc 2323

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>emb|CR625903.1| full-length cDNA clone CS0DM014YF08 of Fetal liver of Homo sapiens
            (human)
          Length = 1643

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1614 aatttttgaaataatcttaaactgc 1590

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>emb|CR616409.1| full-length cDNA clone CS0DL008YJ03 of B cells (Ramos cell line) Cot
            25-normalized of Homo sapiens (human)
          Length = 1654

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1593 aatttttgaaataatcttaaactgc 1569

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>dbj|AK023977.1| Homo sapiens cDNA FLJ13915 fis, clone Y79AA1000328, weakly similar to
            SEL-10 PROTEIN
          Length = 2301

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1368 aatttttgaaataatcttaaactgc 1344

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>dbj|AK021855.1| Homo sapiens cDNA FLJ11793 fis, clone HEMBA1006130, weakly similar to
            SEL-10 PROTEIN
          Length = 1941

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1452 aatttttgaaataatcttaaactgc 1428

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>dbj|AK001766.1| Homo sapiens cDNA FLJ10904 fis, clone OVARC1000013, weakly similar to
            APOPTOTIC PROTEASE ACTIVATING FACTOR 1
          Length = 2536

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1612 aatttttgaaataatcttaaactgc 1588

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>ref|NM_018268.2| Homo sapiens WD repeat domain 41 (WDR41), mRNA
          Length = 2608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1633 aatttttgaaataatcttaaactgc 1609

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>gb|AC022422.5| Homo sapiens chromosome 5 clone CTD-2199L4, complete sequence
          Length = 245697

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 113    aattattgaaataatcttaaactgc 137
              |||| ||||||||||||||||||||
Sbjct: 179495 aatttttgaaataatcttaaactgc 179519

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>dbj|AK076280.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4632409G21 product:hairless, full insert
            sequence
          Length = 2969

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 287  caagcatggaaccgtgttcctcgtcctgg 315
            |||||| |||||| |||||||||||||||
Sbjct: 1857 caagcagggaaccttgttcctcgtcctgg 1885

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>gb|DQ000563.1| Synthetic construct clone PSF:109395 DKFZp434J2114 gene, complete
           cds
          Length = 690

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 113 aattattgaaataatcttaaactgc 137
           |||| ||||||||||||||||||||
Sbjct: 656 aatttttgaaataatcttaaactgc 632

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>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete sequence
          Length = 206798

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 287    caagcatggaaccgtgttcctcgtcctgg 315
              |||||| |||||| |||||||||||||||
Sbjct: 150789 caagcagggaaccttgttcctcgtcctgg 150761

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>gb|AC010234.5|AC010234 Homo sapiens chromosome 5 clone CTC-337B15, complete sequence
          Length = 143553

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 113    aattattgaaataatcttaaactgc 137
              |||| ||||||||||||||||||||
Sbjct: 124365 aatttttgaaataatcttaaactgc 124341

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>gb|AF115511.1| Homo sapiens MSTP048 (MST048) mRNA, complete cds
          Length = 2388

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1414 aatttttgaaataatcttaaactgc 1390

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>dbj|AB019228.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7
          Length = 87090

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   atataagaattcaaactgaag 179
             |||||||||||||||||||||
Sbjct: 27034 atataagaattcaaactgaag 27014

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>gb|BC001807.1| Homo sapiens cDNA clone IMAGE:3354734, containing frame-shift errors
          Length = 1713

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  aattattgaaataatcttaaactgc 137
            |||| ||||||||||||||||||||
Sbjct: 1620 aatttttgaaataatcttaaactgc 1596

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>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006B22, complete sequence
          Length = 166052

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   ctttctcaaaatcaatcttt 357
             ||||||||||||||||||||
Sbjct: 65184 ctttctcaaaatcaatcttt 65165

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>gb|AC135242.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0070D14, complete sequence
          Length = 174780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   ctttctcaaaatcaatcttt 357
             ||||||||||||||||||||
Sbjct: 75891 ctttctcaaaatcaatcttt 75910

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>ref|XM_760984.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
           (TP01_0558) partial mRNA
          Length = 1419

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 tctcaaaatcaatcttttcc 360
           ||||||||||||||||||||
Sbjct: 817 tctcaaaatcaatcttttcc 836

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>emb|AL512283.12| Human DNA sequence from clone RP11-95G17 on chromosome 6 Contains the
             PKIB gene for protein kinase (cAMP-dependent, catalytic)
             inhibitor beta (protein kinase, cAMP-dependent, catalytic,
             inhibitor 2 (PRKACN2)) (similar to FLJ23817). Contains a
             CpG island, complete sequence
          Length = 153677

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 35    tttgttccatagatcttacaacatatggaata 66
             |||||||||| ||||||  |||||||||||||
Sbjct: 44064 tttgttccattgatcttggaacatatggaata 44095

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>emb|AL138726.12| Human DNA sequence from clone RP1-139G21 on chromosome 6 Contains (part
              of) the SLC17A1, SLC17A2 and SLC17A3 genes for the sodium
              phosphate solute carrier family 17 members 1, 2 and 3 and a
              H2A (histone 2A) pseudogene, complete sequence
          Length = 136646

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    cccaaaattattgaaataat 127
              ||||||||||||||||||||
Sbjct: 120015 cccaaaattattgaaataat 120034

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>emb|AL023693.25|HS32B1 Human DNA sequence from clone RP1-32B1 on chromosome 6q22.33-23.3
             Contains the MYB gene for v-myb myeloblastosis viral
             oncogene homolog (avian), 2 novel genes, the 3' end of a
             novel protein and a CpG island, complete sequence
          Length = 188287

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   cccaaaattattgaaataat 127
             ||||||||||||||||||||
Sbjct: 15312 cccaaaattattgaaataat 15331

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>emb|AL604031.10| Mouse DNA sequence from clone RP23-24O5 on chromosome 11 Contains a
             ribosomal protein L13 (Rpl13) pseudogene, a novel gene and
             two CpG islands, complete sequence
          Length = 215675

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   ccaaaattattgaaataatc 128
             ||||||||||||||||||||
Sbjct: 46098 ccaaaattattgaaataatc 46117

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>gb|AC117445.12| Homo sapiens 3 BAC RP11-278A4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 31868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  cccaaaattattgaaataat 127
            ||||||||||||||||||||
Sbjct: 5004 cccaaaattattgaaataat 4985

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 338      ctttctcaaaatcaatcttt 357
                ||||||||||||||||||||
Sbjct: 15082927 ctttctcaaaatcaatcttt 15082946

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 338      ctttctcaaaatcaatcttt 357
                ||||||||||||||||||||
Sbjct: 14729770 ctttctcaaaatcaatcttt 14729751

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>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0424A08
          Length = 151294

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   ctttctcaaaatcaatcttt 357
             ||||||||||||||||||||
Sbjct: 15428 ctttctcaaaatcaatcttt 15447

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>emb|AL935163.7| Zebrafish DNA sequence from clone CH211-206K20, complete sequence
          Length = 158350

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    caaaattattgaaataatct 129
              ||||||||||||||||||||
Sbjct: 132636 caaaattattgaaataatct 132655

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 338      ctttctcaaaatcaatcttt 357
                ||||||||||||||||||||
Sbjct: 15164625 ctttctcaaaatcaatcttt 15164644

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>gb|U14378.1|RCU14378 Rana catesbeiana myosin II nonmuscle clone 27 mRNA, partial cds
          Length = 783

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 aagaaggagaggaacacaga 214
           ||||||||||||||||||||
Sbjct: 412 aagaaggagaggaacacaga 431


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,516,803
Number of Sequences: 3902068
Number of extensions: 4516803
Number of successful extensions: 98304
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98102
Number of HSP's gapped (non-prelim): 199
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result