ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21g09 |
|---|---|
| Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 42.7 bits (99), Expect = 5e-04 Identities = 31/113 (27%), Positives = 48/113 (42%) Frame = -2 Query: 464 RALTAQGAQGGPVARRVKPVPPFERCYDARSLANTRIXXXXXXXXXXXXXGKNWTMNGLS 285 +A T AQ P +VK V PF C+++ + G W ++G Sbjct: 303 QAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKIN----AYPSVDLVMDKPNGPVWRISGED 358 Query: 284 SMVDIKPGTACLAFARMEGVKGRDLAAPAVLIGGFQMENTLLEFDMAKKRLGF 126 MV +PG CL + G + +G Q+E L+ FD+A+ R+GF Sbjct: 359 LMVQAQPGVTCLGV-----MNGGMQPRAEITLGARQLEENLVVFDLARSRVGF 406
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 40.0 bits (92), Expect = 0.003 Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 4/137 (2%) Frame = -2 Query: 482 FVYAFARALTAQGAQGGPVARRVKPVPPFERCYDARSLANTRIXXXXXXXXXXXXXGKNW 303 F FA+ L Q +VK V PF C+++ + G W Sbjct: 311 FTQVFAQQLEKQA--------QVKSVAPFGLCFNSNKIN----AYPSVDLVMDKPNGPVW 358 Query: 302 TMNGLSSMVDIKPGTACLAFARMEGVKGRDLAAPAVLIGGFQMENTLLEFDMAKKRLGFV 123 ++G MV +PG CL + G V +G Q+E L+ FD+A+ R+GF Sbjct: 359 RISGEDLMVQAQPGVTCLGV-----MNGGMQPRAEVTLGTRQLEEKLMVFDLARSRVGFS 413 Query: 122 RLPFFT---QCGH-FNF 84 + +CG FNF Sbjct: 414 TSSLHSHGVKCGDLFNF 430
>G7C_HUMAN (Q9Y334) Protein G7c precursor| Length = 852 Score = 32.3 bits (72), Expect = 0.67 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = +3 Query: 69 VAGLGE---IEVAALGEEGQPDEPEPLLGHVELQQGVLHLEPSDEHRRRGEVPTLDPLHP 239 VAGL +EV LG P +P+P HV L +GV E G+VP L+P+ P Sbjct: 626 VAGLQTQLLVEVTGLGSRANPGDPQPHFSHVIL-RGV------PEGAELGQVP-LEPVGP 677 Query: 240 RER 248 ER Sbjct: 678 PER 680
>ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 16) (ADAM-TS 16) (ADAM-TS16) Length = 1222 Score = 29.6 bits (65), Expect = 4.4 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Frame = +3 Query: 99 ALGEEGQPDEPEP--LLGHVELQQGVLHLEPSDEHRRRGEVPTLDPLHPRERQARR---- 260 A G P++P+P G L+ G L + E RG+ + D +H + R+ RR Sbjct: 30 AAAASGSPEDPQPPPFSGSSWLETGEYDLVSAYEVDHRGDYVSHDIMHYQRRRRRRAVTQ 89 Query: 261 PGLDVHH 281 PG D H Sbjct: 90 PGGDALH 96
>Y1408_METKA (Q8TVI1) UPF0245 protein MK1408| Length = 402 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 Query: 284 SMVDIKPGTACLAFARMEGVKGRDLAAPAVLIGGFQMENTLLE 156 S+VD+KPG LA+ E KGR G ++E T++E Sbjct: 367 SVVDLKPGDKVLAYVETEEGKGRHF--------GMEVEETIVE 401
>TAF9B_HUMAN (Q9HBM6) Transcription initiation factor TFIID subunit 9B| (Transcription initiation factor TFIID subunit 9-like protein) (Transcription-associated factor TAFII31L) (Neuronal cell death-related protein 7) (DN-7) Length = 251 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +1 Query: 187 PMSTAGAARSRPLTPSIRANARHAVPGLMST---IELSPFMVQFLPPPSVSVTP 339 P + GA S+P TP+I +VP ++T + F VQ P S V P Sbjct: 144 PRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKP 197
>R3HD1_HUMAN (Q15032) R3H domain-containing protein 1| Length = 1099 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 69 VAGLGEIEVAALGEEGQPDEPEPLLGHVELQQGVLHLEPSDEHRRRG 209 V G G+ LG+ Q + P L GH+ QQG +P H RG Sbjct: 922 VPGQGDSRYPLLGQPLQYNPPAVLHGHIPNQQG----QPGSRHGNRG 964
>ATF6B_HUMAN (Q99941) Cyclic AMP-dependent transcription factor ATF-6 beta| (Activating transcription factor 6 beta) (ATF6-beta) (cAMP-responsive element-binding protein-like 1) (cAMP response element-binding protein-related protein) (Creb-rp) (Protein G13 Length = 703 Score = 29.3 bits (64), Expect = 5.7 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = +1 Query: 175 IWNPPMSTAGAARSRPLTPSIRANARHAVPGLMSTIELSPFMVQFLPPPSVSVTPGT 345 +W+ P + GA + + PS+ ++ A+P ++ P ++ +P PS +V P T Sbjct: 210 LWDVPAPSLGAVQIS-MGPSLDGSSGKALPTRKPPLQPKPVVLTTVPMPSRAVPPST 265
>DUS2L_HUMAN (Q9NX74) tRNA-dihydrouridine synthase 2-like (EC 1.-.-.-) (hDUS2)| (Up-regulated in lung cancer) (URLC8) Length = 493 Score = 29.3 bits (64), Expect = 5.7 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3 Query: 156 LQQGVLHLEPSDEHRRRGEVPTLDPLHPRERQARRPG 266 L +G L E H+R+ E P DP PR ++ +PG Sbjct: 436 LPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPG 472
>LRCH4_MOUSE (Q921G6) Leucine-rich repeats and calponin homology| domain-containing protein 4 Length = 680 Score = 29.3 bits (64), Expect = 5.7 Identities = 21/60 (35%), Positives = 28/60 (46%) Frame = +3 Query: 81 GEIEVAALGEEGQPDEPEPLLGHVELQQGVLHLEPSDEHRRRGEVPTLDPLHPRERQARR 260 GE E + EE P E + G VE EP+ E RRR + TL RER+ ++ Sbjct: 363 GEDEDRSAAEEQLPSELSLVAGDVEKPSSSRREEPAGEERRRPD--TLQLWQERERKQQQ 420
>RL10A_CHLRE (Q9SW75) 60S ribosomal protein L10a| Length = 213 Score = 29.3 bits (64), Expect = 5.7 Identities = 21/57 (36%), Positives = 26/57 (45%) Frame = +3 Query: 111 EGQPDEPEPLLGHVELQQGVLHLEPSDEHRRRGEVPTLDPLHPRERQARRPGLDVHH 281 EG +P VELQ G+ + +P + R G V P PR R R G DV H Sbjct: 18 EGAKTKPRKFQETVELQIGLKNYDPQKDKRFSGSVRL--PFVPRPRMRVRAG-DVKH 71
>PPDK_RHIME (Q59754) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,| orthophosphate dikinase) Length = 898 Score = 28.9 bits (63), Expect = 7.5 Identities = 11/23 (47%), Positives = 18/23 (78%) Frame = +1 Query: 214 SRPLTPSIRANARHAVPGLMSTI 282 +RPL S+R+ AR ++PG+M T+ Sbjct: 88 NRPLLLSVRSGARASMPGMMDTV 110
>CPSF2_BOVIN (Q10568) Cleavage and polyadenylation specificity factor, 100 kDa| subunit (CPSF 100 kDa subunit) Length = 782 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Frame = +3 Query: 42 RKGSIANGLVAGLGEIEVAALGEEGQPDEPEPLLGHVELQQGVLHLEPSDEHRRRGE--- 212 R + G++ GE++ E Q D P V QQ + D+ + GE Sbjct: 638 RVSKVDTGVILEEGELKDDGEDSEMQVDAPSD--SSVIAQQKAMKSLFGDDEKETGEESE 695 Query: 213 -VPTLDPLHPRE 245 +PTL+PL P E Sbjct: 696 IIPTLEPLPPHE 707
>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta| chain 3) (Beta-IV spectrin) Length = 2564 Score = 28.5 bits (62), Expect = 9.7 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Frame = +3 Query: 72 AGLGEIEVAALGEEGQPDEPEPLL---GHVELQQGVLHLEPSDEHRRRGEVPTLDPLHPR 242 A LGE E+ + E+ DE L H++L+QGV + E S R L+ HP Sbjct: 1635 AWLGEQELLMMSEDKGKDEQSTLQLLKKHLQLEQGVENYEESIAQLSRQCRALLEMGHPD 1694 Query: 243 ERQARR 260 Q R Sbjct: 1695 SEQISR 1700
>PYRD_NEIMA (Q9JX66) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 335 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +3 Query: 75 GLGEIEVAALGEEGQPDEPEPLLGHVELQQGVLHLEPSDEH 197 G G IE+ + + QP P+P L V QG+++ + H Sbjct: 75 GFGFIEIGTVTPKPQPGNPQPRLFRVPEHQGIINRMGFNNH 115
>KITH_FHV1 (P13159) Thymidine kinase (EC 2.7.1.21)| Length = 343 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +3 Query: 54 IANGLVAGLGEIEVAALGEEGQPDEPEPLLGHVELQQGVLHLEPSDEHR 200 + +GL+ L +++ L EG PDE LG + + + D HR Sbjct: 286 VLDGLMETLQNLQIFTLNLEGTPDECAAALGALRQDMDMTFIAACDMHR 334
>DAPA_MAIZE (P26259) Dihydrodipicolinate synthase, chloroplast precursor (EC| 4.2.1.52) (DHDPS) Length = 380 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 187 PMSTAGAARSRPLTPSIRANARHAVPGLMS 276 P+S GAA + P +PS+ A R GL S Sbjct: 15 PVSNGGAATASPSSPSVAARPRRLPSGLQS 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,266,502 Number of Sequences: 219361 Number of extensions: 1087170 Number of successful extensions: 3864 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3735 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3858 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
