ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GR33A_DROME (Q9VKA5) Putative gustatory receptor 33a 29 6.6
2CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor 29 8.6

>GR33A_DROME (Q9VKA5) Putative gustatory receptor 33a|
          Length = 475

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = +2

Query: 173 MRTHQLYPNKPSNQITQDKRSNQSCS-------WSSALRRNGLNLVTLTMTSCFMTISAS 331
           M  H++   KP+  ++ D   N+  S       W    + NG+ L  L  T  F T+SA+
Sbjct: 393 MIVHEIMQKKPAFMLSNDLFYNKMKSFTLQFLHWEGFFQFNGVGLFALDYTFIFSTVSAA 452

Query: 332 AGH 340
             +
Sbjct: 453 TSY 455



to top

>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 26/88 (29%), Positives = 31/88 (35%)
 Frame = -2

Query: 505 GQDGLDGHQLLRAAGXXXXXXXXXXXXXRGGDDSQGQVLPRPLRVQEPHADPRAGMAGAR 326
           G +GLDG +     G              G + S G    R L  +   A P AG AGAR
Sbjct: 175 GYNGLDGRK-----GESGTAGAKGETGAHGANGSPGPAGSRGLNGERGRAGP-AGPAGAR 228

Query: 325 RDRHEAGCHGQCHQIQAVSPQGAGPAAG 242
                 G  G    + A  P G   A G
Sbjct: 229 GADGSTGPAGPAGPLGAAGPPGFPGAPG 256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,894,331
Number of Sequences: 219361
Number of extensions: 1028150
Number of successful extensions: 2597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2593
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top