Clone Name | rbart21g07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 325 bits (164), Expect = 8e-86 Identities = 233/256 (91%) Strand = Plus / Minus Query: 257 agcgccttgaggagaaacggcttgaatctggtgacattgaccatgacatcctgcttcatg 316 ||||||||||| || |||||||||||||| || ||||| ||| |||| |||||||||||| Sbjct: 15385499 agcgccttgagcaggaacggcttgaatcttgtcacattcaccgtgacgtcctgcttcatg 15385440 Query: 317 acgatctctgcgagcgccggccatccctgcgcgtggatctgcatggggttcttgaacacg 376 |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct: 15385439 acgatctcggcgagcgccggccagccctgcgcgtggatggccatggggtccttgaacacg 15385380 Query: 377 tagtggtctcgggagtacttgtccttgagagtcgtctcctcctcggacacgtagtactcg 436 |||||||| | | ||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct: 15385379 tagtggtcccttgggtacttgtccttgagcgtcgtctcctcctccgagacgtaatactcg 15385320 Query: 437 acgtaccggagctgcatgtcgcgcgccggctgcccgtagaagttggtggccatccagtcc 496 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 15385319 acgtaccggagccgcatgtcgcgcgccggctgcccgtagaagtttgtggccatccagtcc 15385260 Query: 497 atcttgccccacggca 512 |||||||||||||||| Sbjct: 15385259 atcttgccccacggca 15385244
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0613F06 Length = 184289 Score = 325 bits (164), Expect = 8e-86 Identities = 233/256 (91%) Strand = Plus / Minus Query: 257 agcgccttgaggagaaacggcttgaatctggtgacattgaccatgacatcctgcttcatg 316 ||||||||||| || |||||||||||||| || ||||| ||| |||| |||||||||||| Sbjct: 53014 agcgccttgagcaggaacggcttgaatcttgtcacattcaccgtgacgtcctgcttcatg 52955 Query: 317 acgatctctgcgagcgccggccatccctgcgcgtggatctgcatggggttcttgaacacg 376 |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct: 52954 acgatctcggcgagcgccggccagccctgcgcgtggatggccatggggtccttgaacacg 52895 Query: 377 tagtggtctcgggagtacttgtccttgagagtcgtctcctcctcggacacgtagtactcg 436 |||||||| | | ||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct: 52894 tagtggtcccttgggtacttgtccttgagcgtcgtctcctcctccgagacgtaatactcg 52835 Query: 437 acgtaccggagctgcatgtcgcgcgccggctgcccgtagaagttggtggccatccagtcc 496 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 52834 acgtaccggagccgcatgtcgcgcgccggctgcccgtagaagtttgtggccatccagtcc 52775 Query: 497 atcttgccccacggca 512 |||||||||||||||| Sbjct: 52774 atcttgccccacggca 52759
>gb|AY106252.1| Zea mays PCO094239 mRNA sequence Length = 457 Score = 234 bits (118), Expect = 2e-58 Identities = 157/170 (92%) Strand = Plus / Minus Query: 343 ctgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtcctt 402 |||||||||||| ||||| |||| |||||||||||||||||| | | |||||||||||| Sbjct: 457 ctgcgcgtggatgtgcattgggtccttgaacacgtagtggtcccttgggtacttgtcctt 398 Query: 403 gagagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgc 462 ||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct: 397 gagcgtcgtctcctcctccgagacgtagtactcgacgtaccggaggcgcatgtcgcgcgc 338 Query: 463 cggctgcccgtagaagttggtggccatccagtccatcttgccccacggca 512 |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 337 cggctggccgtagaagttggtggccatccagtccatcttgccccacggca 288
>ref|XM_465315.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2113 Score = 145 bits (73), Expect = 2e-31 Identities = 190/229 (82%) Strand = Plus / Minus Query: 284 ctggtgacattgaccatgacatcctgcttcatgacgatctctgcgagcgccggccatccc 343 ||||||| |||||| ||| ||||||||||||| || | ||||| | | |||||||| Sbjct: 1746 ctggtgaggttgacctcgacgtcctgcttcatgatagtcgcggcgagtgtctgccatccc 1687 Query: 344 tgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtccttg 403 || ||||||| | | |||||| ||||||||| ||| ||||| ||||| |||| ||| Sbjct: 1686 tgtgcgtggagcgccttggggtccttgaacaccatgtgatctcgcgagtagttgtgcttc 1627 Query: 404 agagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgcc 463 || |||||||||||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 1626 aggctcgtctcctcctcgccgacgtagtactccacgtaccggagctgcatgtccctcgcc 1567 Query: 464 ggctgcccgtagaagttggtggccatccagtccatcttgccccacggca 512 ||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 1566 ggctgcccgtaaaagttggtcgccatccagtccatgttcccccacggca 1518
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 145 bits (73), Expect = 2e-31 Identities = 190/229 (82%) Strand = Plus / Minus Query: 284 ctggtgacattgaccatgacatcctgcttcatgacgatctctgcgagcgccggccatccc 343 ||||||| |||||| ||| ||||||||||||| || | ||||| | | |||||||| Sbjct: 13369149 ctggtgaggttgacctcgacgtcctgcttcatgatagtcgcggcgagtgtctgccatccc 13369090 Query: 344 tgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtccttg 403 || ||||||| | | |||||| ||||||||| ||| ||||| ||||| |||| ||| Sbjct: 13369089 tgtgcgtggagcgccttggggtccttgaacaccatgtgatctcgcgagtagttgtgcttc 13369030 Query: 404 agagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgcc 463 || |||||||||||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 13369029 aggctcgtctcctcctcgccgacgtagtactccacgtaccggagctgcatgtccctcgcc 13368970 Query: 464 ggctgcccgtagaagttggtggccatccagtccatcttgccccacggca 512 ||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 13368969 ggctgcccgtaaaagttggtcgccatccagtccatgttcccccacggca 13368921
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 145 bits (73), Expect = 2e-31 Identities = 190/229 (82%) Strand = Plus / Minus Query: 284 ctggtgacattgaccatgacatcctgcttcatgacgatctctgcgagcgccggccatccc 343 ||||||| |||||| ||| ||||||||||||| || | ||||| | | |||||||| Sbjct: 94400 ctggtgaggttgacctcgacgtcctgcttcatgatagtcgcggcgagtgtctgccatccc 94341 Query: 344 tgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtccttg 403 || ||||||| | | |||||| ||||||||| ||| ||||| ||||| |||| ||| Sbjct: 94340 tgtgcgtggagcgccttggggtccttgaacaccatgtgatctcgcgagtagttgtgcttc 94281 Query: 404 agagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgcc 463 || |||||||||||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 94280 aggctcgtctcctcctcgccgacgtagtactccacgtaccggagctgcatgtccctcgcc 94221 Query: 464 ggctgcccgtagaagttggtggccatccagtccatcttgccccacggca 512 ||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 94220 ggctgcccgtaaaagttggtcgccatccagtccatgttcccccacggca 94172
>dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E13, full insert sequence Length = 2112 Score = 129 bits (65), Expect = 1e-26 Identities = 189/229 (82%), Gaps = 1/229 (0%) Strand = Plus / Minus Query: 284 ctggtgacattgaccatgacatcctgcttcatgacgatctctgcgagcgccggccatccc 343 ||||||| |||||| ||| ||||||||||||| || | ||||| | | |||||||| Sbjct: 1745 ctggtgaggttgacctcgacgtcctgcttcatgatagtcgcggcgagtgtctgccatccc 1686 Query: 344 tgcgcgtggatctgcatggggttcttgaacacgtagtggtctcgggagtacttgtccttg 403 || ||||||| | | |||||| ||||||||| ||| ||||| ||||| |||| ||| Sbjct: 1685 tgtgcgtggagcgccttggggtccttgaacaccatgtgatctcgcgagtagttgtgcttc 1626 Query: 404 agagtcgtctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgcc 463 || |||||||||||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 1625 aggctcgtctcctcctcgccgacgtagtactccacgtaccggagctgcatgtccctcgcc 1566 Query: 464 ggctgcccgtagaagttggtggccatccagtccatcttgccccacggca 512 ||||||||||| ||||| || |||||||||||||| || |||||||||| Sbjct: 1565 ggctgcccgtaaaagtt-gtcgccatccagtccatgttcccccacggca 1518
>gb|AY106834.1| Zea mays PCO140173 mRNA sequence Length = 616 Score = 99.6 bits (50), Expect = 9e-18 Identities = 175/214 (81%), Gaps = 2/214 (0%) Strand = Plus / Minus Query: 300 tgacatcctgcttcatgacgatctctgcgagcgccggccatccctgcgcgtggatctgca 359 |||| ||||||||||||||| ||| ||||||||| |||| |||||| ||||| | || Sbjct: 441 tgacgtcctgcttcatgacggtctgggcgagcgcctgccacccctgcttgtggagcgcca 382 Query: 360 tggggttcttgaacacgtagtggtctcgggagtacttgtccttgagagtcgtctcctcct 419 |||||| ||||||| ||| || || | ||||||||||||||| ||||||||||| Sbjct: 381 tggggtcgctgaacaccacgtgctcccgcgggtacttgtccttgaggctcgtctcctccg 322 Query: 420 cggacacgtagtactcgacgtaccggagctgcatgtcgcgc-gccggctgcccgtagaag 478 | ||||||||||| | ||| |||||| || | | ||| |||||| || |||||||| Sbjct: 321 ccccgacgtagtactccaggtagcggagcccca-gccccgccgccggccgcgcgtagaag 263 Query: 479 ttggtggccatccagtccatcttgccccacggca 512 |||||||||||||||||||||||||||||||||| Sbjct: 262 ttggtggccatccagtccatcttgccccacggca 229
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 451 catgtcgcgcgccggctgcccgtagaagttggtggccatccagtccatcttgccccacgg 510 ||||||||||||||||| ||||||||||| ||||||||||| |||||| |||| |||| Sbjct: 8172 catgtcgcgcgccggctcgccgtagaagttcgtggccatccactccatcccgcccaacgg 8231 Query: 511 ca 512 || Sbjct: 8232 ca 8233 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 451 catgtcgcgcgccggctgcccgtagaagttggtggccatccagtccatc 499 |||| |||| ||||||| ||||||||||||||||||||||| |||||| Sbjct: 11967 catgccgcgtgccggctcaccgtagaagttggtggccatccactccatc 12015
>ref|XM_549936.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1812 Score = 60.0 bits (30), Expect = 7e-06 Identities = 84/102 (82%) Strand = Plus / Minus Query: 411 tctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgccggctgcc 470 |||||||| | | ||||| |||||| ||||||| ||||| |||| | ||||||| | Sbjct: 1639 tctcctccgccgccacgtggtactccacgtacctgagctccatggccgccgccggcgcgc 1580 Query: 471 cgtagaagttggtggccatccagtccatcttgccccacggca 512 ||||||||||||| |||||||| |||||| | |||||||||| Sbjct: 1579 cgtagaagttggtcgccatccactccatcctcccccacggca 1538 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 tgacatcctgcttcatgacgatctctgcgagcgcc 334 ||||||||||| |||||||||| || ||||||||| Sbjct: 1750 tgacatcctgcgtcatgacgatgtcagcgagcgcc 1716
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 7e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 411 tctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgccggctgcc 470 |||||||| | | ||||| |||||| ||||||| ||||| |||| | ||||||| | Sbjct: 1065851 tctcctccgccgccacgtggtactccacgtacctgagctccatggccgccgccggcgcgc 1065910 Query: 471 cgtagaagttggtggccatccagtccatcttgccccacggca 512 ||||||||||||| |||||||| |||||| | |||||||||| Sbjct: 1065911 cgtagaagttggtcgccatccactccatcctcccccacggca 1065952 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 300 tgacatcctgcttcatgacgatctctgcgagcgcc 334 ||||||||||| |||||||||| || ||||||||| Sbjct: 1065740 tgacatcctgcgtcatgacgatgtcagcgagcgcc 1065774
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 60.0 bits (30), Expect = 7e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 411 tctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgccggctgcc 470 |||||||| | | ||||| |||||| ||||||| ||||| |||| | ||||||| | Sbjct: 103519 tctcctccgccgccacgtggtactccacgtacctgagctccatggccgccgccggcgcgc 103578 Query: 471 cgtagaagttggtggccatccagtccatcttgccccacggca 512 ||||||||||||| |||||||| |||||| | |||||||||| Sbjct: 103579 cgtagaagttggtcgccatccactccatcctcccccacggca 103620 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 300 tgacatcctgcttcatgacgatctctgcgagcgcc 334 ||||||||||| |||||||||| || ||||||||| Sbjct: 103408 tgacatcctgcgtcatgacgatgtcagcgagcgcc 103442
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 60.0 bits (30), Expect = 7e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 411 tctcctcctcggacacgtagtactcgacgtaccggagctgcatgtcgcgcgccggctgcc 470 |||||||| | | ||||| |||||| ||||||| ||||| |||| | ||||||| | Sbjct: 35165 tctcctccgccgccacgtggtactccacgtacctgagctccatggccgccgccggcgcgc 35224 Query: 471 cgtagaagttggtggccatccagtccatcttgccccacggca 512 ||||||||||||| |||||||| |||||| | |||||||||| Sbjct: 35225 cgtagaagttggtcgccatccactccatcctcccccacggca 35266 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 300 tgacatcctgcttcatgacgatctctgcgagcgcc 334 ||||||||||| |||||||||| || ||||||||| Sbjct: 35054 tgacatcctgcgtcatgacgatgtcagcgagcgcc 35088
>gb|AC154680.2| Mus musculus BAC clone RP24-313N16 from chromosome 13, complete sequence Length = 167328 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 accaagtaaccaaataacccaa 223 |||||||||||||||||||||| Sbjct: 136807 accaagtaaccaaataacccaa 136828
>gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome 17, complete sequence Length = 199737 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 aacaaaccaagtaaccaaata 217 ||||||||||||||||||||| Sbjct: 162042 aacaaaccaagtaaccaaata 162022
>gb|AC151353.2| Xenopus tropicalis clone ISB-4M1, complete sequence Length = 110908 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 ctgttcccagttcagtacagg 64 ||||||||||||||||||||| Sbjct: 50336 ctgttcccagttcagtacagg 50356
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 aaatcaattaagtaactttga 158 ||||||||||||||||||||| Sbjct: 21053999 aaatcaattaagtaactttga 21054019
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 aaatcaattaagtaactttga 158 ||||||||||||||||||||| Sbjct: 20980208 aaatcaattaagtaactttga 20980228
>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 182172 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 aaatcaattaagtaactttga 158 ||||||||||||||||||||| Sbjct: 139484 aaatcaattaagtaactttga 139504
>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence Length = 164920 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gctggtccagcgccttgagg 268 |||||||||||||||||||| Sbjct: 70879 gctggtccagcgccttgagg 70860
>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence Length = 220191 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 caacaaaccaagtaaccaaa 215 |||||||||||||||||||| Sbjct: 46657 caacaaaccaagtaaccaaa 46638
>gb|AC134795.10| Mus musculus chromosome 15, clone RP24-456M21, complete sequence Length = 166650 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 aaaccaagtaaccaaataacccaa 223 |||||||| ||||||||||||||| Sbjct: 106755 aaaccaagaaaccaaataacccaa 106732
>ref|XM_712875.1| Candida albicans SC5314 UDP-glucose-starch glucosyltransferase (CaO19_3278), mRNA Length = 1986 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 aaaccaagtaaccaaataacccaa 223 |||||||| ||||||||||||||| Sbjct: 426 aaaccaagcaaccaaataacccaa 403
>ref|XM_712809.1| Candida albicans SC5314 UDP-glucose-starch glucosyltransferase (CaO19_10788), mRNA Length = 1986 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 aaaccaagtaaccaaataacccaa 223 |||||||| ||||||||||||||| Sbjct: 426 aaaccaagcaaccaaataacccaa 403
>gb|BT011071.1| Drosophila melanogaster SD21488 full insert cDNA Length = 5092 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gctggtccagcgccttgagg 268 |||||||||||||||||||| Sbjct: 4745 gctggtccagcgccttgagg 4726
>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete sequence Length = 150375 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccaacaaaccaagtaaccaa 214 |||||||||||||||||||| Sbjct: 78731 ccaacaaaccaagtaaccaa 78750
>gb|AC121948.2| Mus musculus BAC clone RP24-215A14 from 8, complete sequence Length = 152738 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 ccccaacaaaccaagtaaccaaat 216 |||||||||||||| ||||||||| Sbjct: 46166 ccccaacaaaccaaataaccaaat 46143
>ref|XM_950158.1| Theileria annulata strain Ankara hypothetical protein (TA05210) partial mRNA Length = 3741 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tggtgacattgaccatgaca 304 |||||||||||||||||||| Sbjct: 2190 tggtgacattgaccatgaca 2209
>emb|BX957269.5| Zebrafish DNA sequence from clone CH211-12C22 in linkage group 6, complete sequence Length = 174814 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 tcatcacttcatcagtatgtatat 42 ||||||||||||||| |||||||| Sbjct: 113982 tcatcacttcatcagaatgtatat 114005
>emb|AL451049.11| Human DNA sequence from clone RP11-63A2 on chromosome 10 Contains a novel gene and a CpG island, complete sequence Length = 166973 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 agacaaacgctctaatcaatcctg 246 |||||||| ||||||||||||||| Sbjct: 126764 agacaaactctctaatcaatcctg 126787
>gb|AC157582.3| Mus musculus chromosome 15, clone RP24-316F24, complete sequence Length = 207168 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 aaaccaagtaaccaaataacccaa 223 |||||||| ||||||||||||||| Sbjct: 14715 aaaccaagaaaccaaataacccaa 14738
>emb|X91489.1|SCVIIGENE S.cerevisiae DNA from chromosome VII including CDC55, RPS26A, COX4, G1380, G1601, G1604, G1607, LSR1 and G1615 genes Length = 16776 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 aaataacccaagacaaacgctcta 236 ||||||| |||||||||||||||| Sbjct: 13977 aaataactcaagacaaacgctcta 13954
>gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome 12, complete sequence Length = 226483 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccaacaaaccaagtaaccaa 214 |||||||||||||||||||| Sbjct: 48393 ccaacaaaccaagtaaccaa 48412
>gb|AY095050.1| Drosophila melanogaster LD39323 full insert cDNA Length = 3483 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gctggtccagcgccttgagg 268 |||||||||||||||||||| Sbjct: 3171 gctggtccagcgccttgagg 3152
>gb|AC022398.7| Homo sapiens chromosome 10 clone RP11-491H19, complete sequence Length = 169184 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 agacaaacgctctaatcaatcctg 246 |||||||| ||||||||||||||| Sbjct: 141371 agacaaactctctaatcaatcctg 141348
>ref|NM_057849.3| Drosophila melanogaster Chromodomain-helicase-DNA-binding protein CG3733-RA (Chd1), mRNA Length = 6288 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gctggtccagcgccttgagg 268 |||||||||||||||||||| Sbjct: 4745 gctggtccagcgccttgagg 4726
>gb|AC112986.16| Mus musculus chromosome 1, clone RP24-250E15, complete sequence Length = 157764 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 atcacttcatcagtatgtat 40 |||||||||||||||||||| Sbjct: 112754 atcacttcatcagtatgtat 112773
>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones DS02190 and DS00906, complete sequence Length = 163403 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gctggtccagcgccttgagg 268 |||||||||||||||||||| Sbjct: 49063 gctggtccagcgccttgagg 49044
>emb|Z72702.1|SCYGL180W S.cerevisiae chromosome VII reading frame ORF YGL180w Length = 4312 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 aaataacccaagacaaacgctcta 236 ||||||| |||||||||||||||| Sbjct: 1426 aaataactcaagacaaacgctcta 1403
>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete sequence Length = 314957 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 gctggtccagcgccttgagg 268 |||||||||||||||||||| Sbjct: 151637 gctggtccagcgccttgagg 151656
>gb|L77907.1|DROCHD1A Drosophila melanogaster chromodomain-helicase-DNA-binding (CHD-1) mRNA, complete cds Length = 6242 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gctggtccagcgccttgagg 268 |||||||||||||||||||| Sbjct: 4697 gctggtccagcgccttgagg 4678
>dbj|AP006629.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT10B11, TM0008, complete sequence Length = 116223 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgaatctggtgacattgac 297 |||||||||||||||||||| Sbjct: 24859 ttgaatctggtgacattgac 24840
>gb|AC163287.4| Mus musculus BAC clone RP23-279E21 from chromosome 8, complete sequence Length = 201346 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 ccccaacaaaccaagtaaccaaat 216 |||||||||||||| ||||||||| Sbjct: 38697 ccccaacaaaccaaataaccaaat 38720
>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence Length = 193547 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ccaacaaaccaagtaaccaa 214 |||||||||||||||||||| Sbjct: 167969 ccaacaaaccaagtaaccaa 167988
>gb|AY147013.1| Leishmania major DNA polymerase I type A (POLIA) mRNA, complete cds; nuclear gene for mitochondrial product Length = 2796 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 tgcgcgtggatctgcatggggttc 367 |||||||||||||||||| ||||| Sbjct: 1202 tgcgcgtggatctgcatgaggttc 1225
>dbj|D29991.1| Saccharomyces cerevisiae gene for Apg1p, complete cds Length = 3525 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 aaataacccaagacaaacgctcta 236 ||||||| |||||||||||||||| Sbjct: 724 aaataactcaagacaaacgctcta 701 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,097,550 Number of Sequences: 3902068 Number of extensions: 4097550 Number of successful extensions: 76339 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76147 Number of HSP's gapped (non-prelim): 191 length of query: 512 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 489 effective length of database: 17,143,297,704 effective search space: 8383072577256 effective search space used: 8383072577256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)