Clone Name | rbart21g06 |
---|---|
Clone Library Name | barley_pub |
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 206 cagcaacggtcttgccatgctcatt 230 |||||||||||||||||| |||||| Sbjct: 1486717 cagcaacggtcttgccatcctcatt 1486693
>emb|AJ132755.1|ONO132755 Ophiostoma novo-ulmi mitovirus 5-Ld mRNA for putative RNA-dependent RNA polymerase Length = 2474 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 cctgaaatcgataataatctt 34 ||||||||||||||||||||| Sbjct: 430 cctgaaatcgataataatctt 410
>gb|U60065.1|GLU60065 Gibbon leukemia virus strain X, complete genome Length = 8379 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 ggaacagaccgaaaccaaaat 288 ||||||||||||||||||||| Sbjct: 625 ggaacagaccgaaaccaaaat 605
>dbj|AP001331.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1153C10 Length = 207620 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 aagagaaaacaatcactatcc 72 ||||||||||||||||||||| Sbjct: 23412 aagagaaaacaatcactatcc 23392
>dbj|AP003479.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1296F8 Length = 146340 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 aagagaaaacaatcactatcc 72 ||||||||||||||||||||| Sbjct: 120999 aagagaaaacaatcactatcc 120979
>ref|NM_130261.2| Arabidopsis thaliana carboxylic ester hydrolase AT2G46930 mRNA, complete cds Length = 1614 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcagcaacggtcttgccatg 224 |||||||||||||||||||| Sbjct: 1260 tcagcaacggtcttgccatg 1241
>ref|XM_501951.1| Yarrowia lipolytica CLIB122, YALI0C17831g predicted mRNA Length = 1476 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 tcagcaacggtcttgccatgctca 228 |||||||||||||| ||||||||| Sbjct: 89 tcagcaacggtcttaccatgctca 112
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ccgcacatcgacaaacaatccggt 94 |||||||||| ||||||||||||| Sbjct: 793251 ccgcacatcggcaaacaatccggt 793274
>gb|AY052671.1| Arabidopsis thaliana At2g46930/F14M4.24 mRNA, complete cds Length = 1509 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcagcaacggtcttgccatg 224 |||||||||||||||||||| Sbjct: 1260 tcagcaacggtcttgccatg 1241
>gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete sequence Length = 151308 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 caaggacagttccttctgccaaca 314 |||| ||||||||||||||||||| Sbjct: 115513 caagcacagttccttctgccaaca 115536
>emb|BX820116.1|CNS0A8JG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS75ZE08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1405 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcagcaacggtcttgccatg 224 |||||||||||||||||||| Sbjct: 1188 tcagcaacggtcttgccatg 1169
>emb|BX649220.6| Chicken DNA sequence from clone WAG-14F8, complete sequence Length = 87646 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 caagagaaaacaatcactat 70 |||||||||||||||||||| Sbjct: 69035 caagagaaaacaatcactat 69054
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 tcagcaacggtcttgccatgctca 228 |||||||||||||| ||||||||| Sbjct: 2472361 tcagcaacggtcttaccatgctca 2472338 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,029,718 Number of Sequences: 3902068 Number of extensions: 3029718 Number of successful extensions: 55687 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55632 Number of HSP's gapped (non-prelim): 55 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)