>RL4_BIFLO (Q8G416) 50S ribosomal protein L4|
          Length = 218

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -1

Query: 277 G*SRARQGQRRPAHWWRGVEVFSDCPLAWRDYHTTIP 167
           G  RARQG  R   W+ G  VF   P   RDY    P
Sbjct: 76  GTGRARQGSIRAPQWYHGGTVFGPQP---RDYSQRTP 109

>UBX5_YEAST (Q06682) UBX domain-containing protein 5|
          Length = 500

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 102 MDFALQTQINNQSS--NQEPIPSTG 170
           M+ A++  +NN SS  NQE +PSTG
Sbjct: 365 MELAIKESLNNNSSKSNQEEVPSTG 389

>ISOA_FLASP (O32611) Isoamylase precursor (EC 3.2.1.68)|
          Length = 777

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 271 STRLSLFLHKNPTGSDKFGTLS 336
           +TR+ +FL+KNPTGS +   L+
Sbjct: 59  ATRVEVFLYKNPTGSQEVARLA 80

>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 210

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +1

Query: 40  FTSTNLHLMYTHXXXXXXXXXXXXXSKPKLITKAQTRNQSLPRGWSCDNLS-----KRGG 204
           F  ++L +  TH              K +L+ + + R   LPR    D ++     KRG 
Sbjct: 130 FQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGE 189

Query: 205 NRKILRRLSTNGR 243
             KI+RR  T+GR
Sbjct: 190 VVKIVRRSETSGR 202

>GLMU_THIDA (Q3SF69) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 458

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = -3

Query: 275 VEQSPARAKEARPLVERRRSIFRLPPR-----LERLSHDHPRGRDWFL-V*ALVINLGLE 114
           VE   A A E R + E    I  +P R     +  L +D+ +G  +   + AL +  G+E
Sbjct: 152 VEHKDASAAE-RAIQEVNTGILAVPTRHLKRWIGELRNDNAQGEYYLTDIVALAVRDGVE 210

Query: 113 SKIHKPRQKKRRICVYIRCRLVEVNRGVKSEYMQ 12
            + H+P+     + V  + +L E+ R  ++E  Q
Sbjct: 211 IETHQPQHDWEVLGVNSKAQLAELERIHQNEVAQ 244

>O51I2_HUMAN (Q9H344) Olfactory receptor 51I2 (Odorant receptor HOR5'beta12)|
           (Olfactory receptor OR11-38)
          Length = 312

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 12  LHIFGFHTPIYLH*STPDVYTYPPLLLS 95
           +H FG H P Y+H    +VY + P +L+
Sbjct: 261 VHRFGKHVPCYIHVLMSNVYLFVPPVLN 288

>NH218_CAEEL (O18086) Nuclear hormone receptor family member nhr-218|
          Length = 400

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 145 FELWLLIWVWRAKSINRDRRRGGYVYTS 62
           + LW L+W    K +N D  R G  YT+
Sbjct: 304 YMLWQLVWFVAEKVLNEDNLRHGEQYTN 331

>RCEH_RHOVI (P06008) Reaction center protein H chain (Photosynthetic reaction|
           center H subunit)
          Length = 258

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 148 WFELWLLIWVWRAKSINRDRRRGGY 74
           W+  WL+IW      + R+ RR GY
Sbjct: 17  WYAQWLVIWTVVLLYLRREDRREGY 41

>UN13D_RAT (Q9R189) Unc-13 homolog D (Munc13-4)|
          Length = 1088

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 205 CPLAWRDYHTTIPVEGIGSWFELWLLIWVWRAKSINRDR 89
           C L   D H  + ++G   WF+  +  W+ R  S+  +R
Sbjct: 567 CQLGPSDSHEVLALDGFHRWFQSAIPSWLQRTYSVALER 605

>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = +1

Query: 40  FTSTNLHLMYTHXXXXXXXXXXXXXSKPKLITKAQTRNQSLPRGWSCDNLS-----KRGG 204
           F  T L +  TH              K +L+ + + +   LPR    D ++     KRG 
Sbjct: 135 FNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGE 194

Query: 205 NRKILRRLSTNGR 243
             KI+R+  T+GR
Sbjct: 195 VVKIIRKSETSGR 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,743,296
Number of Sequences: 219361
Number of extensions: 1095664
Number of successful extensions: 2845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2842
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)