>RP541_RHIME (P17263) RNA polymerase sigma-54 factor|
          Length = 514

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 424 LVLVQFSAQEEERHGEASKQPSVDPT---RKVFGEMPGELGGRPDQ 296
           L L  F AQE E++     QP+ +PT   R+  G  P E GG  D+
Sbjct: 33  LELSHFIAQEVEKNPLLEVQPADEPTISDREDAGPHPAETGGETDE 78

>CBX4_HUMAN (O00257) Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2)|
           (hPc2)
          Length = 558

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = -2

Query: 400 QEEERHGEASKQPS------VDPTRKVFGEMPGELGGRPD 299
           +EEE  G +  QP       + PT++ FGE P +L  +PD
Sbjct: 326 REEEVSGVSDPQPQDAGSRKLSPTKEAFGEQPLQLTTKPD 365


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,382,924
Number of Sequences: 219361
Number of extensions: 975596
Number of successful extensions: 2215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2215
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)