ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21g03 |
|---|---|
| Clone Library Name | barley_pub |
>PNS1_ASPFU (Q4WYG7) Protein pns1| Length = 537 Score = 31.2 bits (69), Expect = 1.7 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -2 Query: 440 WLAWAPSPGWWPRGSSRGARPGWRQCCTY 354 W W+ SP PRGS+RGA +R+ TY Sbjct: 311 WYFWSQSPNGMPRGSTRGA---FRRATTY 336
>ODP2_RHIME (Q9R9N3) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 447 Score = 30.8 bits (68), Expect = 2.2 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +2 Query: 368 ASILASPL*KSPAATSPAMAPRPATAVALSPLAPDSDCLAGG 493 A + +P K A T+PA AP PA A A AP S A G Sbjct: 95 AGAVPAPKPKETAETAPAAAPAPAAAPAPQAAAPASPAPADG 136
>SYC_PYRAE (Q8ZYD8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 474 Score = 30.0 bits (66), Expect = 3.7 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = -2 Query: 440 WLAWAPSPGWWPRGSSRGARPGWRQCCTYVRT 345 W +W P WW G RPGW C + T Sbjct: 190 WKSWTPGEPWWNSPWCPG-RPGWHLECVVMST 220
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +2 Query: 308 TDTMS*STTCNLTYVRTYSTASILASPL*KSPAATSPAMAPRPATAVALSP 460 T ++ +TT +T +T +I +P +P SPA P PATA A +P Sbjct: 791 TAAVAAATTAAITAAAAAATTAIQVAPATSAPVP-SPASIPAPATAQASAP 840
>YYBO_BACSU (P37489) Hypothetical transport protein yybO| Length = 435 Score = 29.6 bits (65), Expect = 4.8 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 119 SIGRFARVISEPSFALFIFLHNSFMWRMKHVTIGC 15 S +F+ VI P L FL +F WR+ +TIGC Sbjct: 153 SAAKFSNVIGAP---LVAFLVTTFDWRVAFLTIGC 184
>COX3_TRYBO (Q37355) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 286 Score = 29.6 bits (65), Expect = 4.8 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = -2 Query: 230 VGYLGFYVMIFFYITLMSLSYIFLPTLCCGT*VLDHLSIGRFARVISEPSFALFIFLHNS 51 +GY+ ++ + F+ +++ Y+F+ LCC VL + + ++S+ IFL Sbjct: 137 LGYIFYWFLFDFFNIILNTVYLFISGLCCNN-VLSSILCREY--LLSKIILGSSIFLGLL 193 Query: 50 FMW 42 F+W Sbjct: 194 FIW 196
>SYC_SULSO (Q97WE6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 470 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 440 WLAWAPSPGWWPRGSSRGARPGWRQCCTYVRT 345 W AW P +W +G RPGW C+ + T Sbjct: 184 WKAWKPGEPYWESPWGKG-RPGWHIECSTMST 214
>SYC_SULAC (Q4JCA6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 469 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 440 WLAWAPSPGWWPRGSSRGARPGWRQCCTYVRT 345 W AW P +W +G RPGW C+ + T Sbjct: 183 WKAWKPGEPYWESPWGKG-RPGWHIECSTMST 213
>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa glycoprotein) (FAP-B) Length = 325 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 362 STASILASPL*KSPAATSPAMAPRPATAVALSPLAP 469 S ++A P +PA PA AP PA VA +P P Sbjct: 282 SIRPLVAPPPAPAPAPAEPAPAPAPAGEVAPTPTTP 317
>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor| (Fibronectin attachment protein) (45/47 kDa antigen) (FAP-B) Length = 325 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 362 STASILASPL*KSPAATSPAMAPRPATAVALSPLAP 469 S ++A P +PA PA AP PA VA +P P Sbjct: 282 SIRPLVAPPPAPAPAPAEPAPAPAPAGEVAPTPTTP 317
>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing| protein 6) (Fragment) Length = 608 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = +2 Query: 341 LTYVRTYSTASILASPL*KSPAATSPAMAPRPATAVALSPLAPDSDCL 484 L+ RT + LA L P + P AP A AVA PL P CL Sbjct: 106 LSRTRTLTETPALAG-LSALPVSQLPVFAPLAAAAVAAEPLPPKELCL 152
>ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 553 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 398 SPAATSPAMAPRPATAVALSPLA 466 +PAA +PA AP PA A A +P A Sbjct: 95 APAAAAPAPAPAPAAAPAAAPAA 117
>Y177_BACHD (Q9KGC7) Hypothetical protein BH0177| Length = 272 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -2 Query: 257 LLLWLAVTVVGYLGFYVMIFFYITLMSLSYIFL 159 LLLWL + ++G L + + I+ L+SL ++FL Sbjct: 160 LLLWLLLFLLGLLFYVIFIWTKSPLVSLLFVFL 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,667,798 Number of Sequences: 219361 Number of extensions: 1186618 Number of successful extensions: 4207 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3826 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4185 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
