ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21g03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 192399 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 344 acgtacgtacgtacgtacagcac 366 ||||||||||||||||||||||| Sbjct: 35431 acgtacgtacgtacgtacagcac 35409
>ref|NM_138225.2| Drosophila melanogaster CG13907-RA (CG13907), mRNA Length = 4593 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 acgtacgtacgtacgtacagcac 366 ||||||||||||||||||||||| Sbjct: 314 acgtacgtacgtacgtacagcac 336
>gb|AY089513.1| Drosophila melanogaster GH22266 full insert cDNA Length = 4629 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 acgtacgtacgtacgtacagcac 366 ||||||||||||||||||||||| Sbjct: 314 acgtacgtacgtacgtacagcac 336
>gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete sequence Length = 286515 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 344 acgtacgtacgtacgtacagcac 366 ||||||||||||||||||||||| Sbjct: 254042 acgtacgtacgtacgtacagcac 254020
>emb|AL162378.16| Human DNA sequence from clone RP11-394C23 on chromosome 13q21.1-21.3, complete sequence Length = 175820 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 60 taaaaagataaacaatgcaaat 81 |||||||||||||||||||||| Sbjct: 51174 taaaaagataaacaatgcaaat 51195
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 gactgcttggccggcggcgcgagcac 501 ||||||||||| |||||||||||||| Sbjct: 6098646 gactgcttggcgggcggcgcgagcac 6098621 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 acagcactgcctccatcctggcct 383 ||||||||||||||| |||||||| Sbjct: 6098760 acagcactgcctccaccctggcct 6098737
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 gactgcttggccggcggcgcgagcac 501 ||||||||||| |||||||||||||| Sbjct: 12465 gactgcttggcgggcggcgcgagcac 12440 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 acagcactgcctccatcctggcct 383 ||||||||||||||| |||||||| Sbjct: 12579 acagcactgcctccaccctggcct 12556
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644A02 Length = 144954 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 gactgcttggccggcggcgcgagcac 501 ||||||||||| |||||||||||||| Sbjct: 103145 gactgcttggcgggcggcgcgagcac 103120 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 acagcactgcctccatcctggcct 383 ||||||||||||||| |||||||| Sbjct: 103259 acagcactgcctccaccctggcct 103236
>dbj|AK106768.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F05, full insert sequence Length = 1448 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 gactgcttggccggcggcgcgagcac 501 ||||||||||| |||||||||||||| Sbjct: 876 gactgcttggcgggcggcgcgagcac 901 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 acagcactgcctccatcctggcct 383 ||||||||||||||| |||||||| Sbjct: 762 acagcactgcctccaccctggcct 785
>dbj|AK104260.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G10, full insert sequence Length = 886 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 gactgcttggccggcggcgcgagcac 501 ||||||||||| |||||||||||||| Sbjct: 585 gactgcttggcgggcggcgcgagcac 560 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 acagcactgcctccatcctggcct 383 ||||||||||||||| |||||||| Sbjct: 699 acagcactgcctccaccctggcct 676
>dbj|AK104000.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E04, full insert sequence Length = 848 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 gactgcttggccggcggcgcgagcac 501 ||||||||||| |||||||||||||| Sbjct: 585 gactgcttggcgggcggcgcgagcac 560 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 acagcactgcctccatcctggcct 383 ||||||||||||||| |||||||| Sbjct: 699 acagcactgcctccaccctggcct 676
>dbj|AK072802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135E05, full insert sequence Length = 889 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 gactgcttggccggcggcgcgagcac 501 ||||||||||| |||||||||||||| Sbjct: 588 gactgcttggcgggcggcgcgagcac 563 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 acagcactgcctccatcctggcct 383 ||||||||||||||| |||||||| Sbjct: 702 acagcactgcctccaccctggcct 679
>ref|NM_197332.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026L12.28), mRNA Length = 213 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 aacgtacgtacgtacgtacag 363 ||||||||||||||||||||| Sbjct: 152 aacgtacgtacgtacgtacag 172
>gb|AY658942.1| Synthetic construct Peudomonas aeruginosa clone FLH036025.01F PA1826 gene, partial cds Length = 906 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 cggccaccagcccggcgatgg 425 ||||||||||||||||||||| Sbjct: 706 cggccaccagcccggcgatgg 686
>emb|AL645569.21| Mouse DNA sequence from clone RP23-96I9 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to rat rabphilin-3a related protein, two novel genes and two CpG islands, complete sequence Length = 131144 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 aaagataaacaatgcaaatgaaggt 87 |||||||||||||| |||||||||| Sbjct: 52122 aaagataaacaatgaaaatgaaggt 52098
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 aacgtacgtacgtacgtacag 363 ||||||||||||||||||||| Sbjct: 71732 aacgtacgtacgtacgtacag 71712
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 aacgtacgtacgtacgtacag 363 ||||||||||||||||||||| Sbjct: 19304649 aacgtacgtacgtacgtacag 19304669
>gb|AE004609.1| Pseudomonas aeruginosa PAO1, section 170 of 529 of the complete genome Length = 12879 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 cggccaccagcccggcgatgg 425 ||||||||||||||||||||| Sbjct: 922 cggccaccagcccggcgatgg 942
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 aacgtacgtacgtacgtacag 363 ||||||||||||||||||||| Sbjct: 19315925 aacgtacgtacgtacgtacag 19315945
>gb|AY024106.1| Oryza sativa microsatellite MRG6431 containing (GTAC)X8, genomic sequence Length = 232 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 taacgtacgtacgtacgtac 361 |||||||||||||||||||| Sbjct: 136 taacgtacgtacgtacgtac 117
>gb|AC116520.14| Mus musculus chromosome 15, clone RP24-340J12, complete sequence Length = 149118 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgaatgaattatgtaaaaa 65 |||||||||||||||||||| Sbjct: 22398 atgaatgaattatgtaaaaa 22379
>gb|AC116393.10| Mus musculus chromosome 15, clone RP23-94I16, complete sequence Length = 217156 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgaatgaattatgtaaaaa 65 |||||||||||||||||||| Sbjct: 213499 atgaatgaattatgtaaaaa 213480
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 cccgcggccaccagcccggcgatg 424 |||||| ||||||||||||||||| Sbjct: 3462315 cccgcgcccaccagcccggcgatg 3462292
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 taacgtacgtacgtacgtac 361 |||||||||||||||||||| Sbjct: 19330709 taacgtacgtacgtacgtac 19330728
>gb|AC129561.13| Mus musculus chromosome 1, clone RP23-192P10, complete sequence Length = 217279 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 taaacaatgcaaatgaaggt 87 |||||||||||||||||||| Sbjct: 154192 taaacaatgcaaatgaaggt 154173
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 gcgatggcgcccaggccagccacc 442 ||||||||| |||||||||||||| Sbjct: 4573775 gcgatggcgaccaggccagccacc 4573752 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 ccaccagcccggcgatggcg 427 |||||||||||||||||||| Sbjct: 555543 ccaccagcccggcgatggcg 555562
>emb|CR749176.14| Zebrafish DNA sequence from clone DKEY-43B13 in linkage group 19, complete sequence Length = 237649 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 acgtacgtacgtacgtacag 363 |||||||||||||||||||| Sbjct: 182227 acgtacgtacgtacgtacag 182208
>gb|DQ088033.1| Desulfovibrio gigas cytochrome bd operon, complete sequence; and Ca2+/Na+ antiporter gene, complete cds Length = 5052 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ccgcggccaccagcccggcg 421 |||||||||||||||||||| Sbjct: 4718 ccgcggccaccagcccggcg 4737
>emb|AL512446.8| Human DNA sequence from clone RP11-268K9 on chromosome 6, complete sequence Length = 61258 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tgaattatgtaaaaagataa 70 |||||||||||||||||||| Sbjct: 4303 tgaattatgtaaaaagataa 4284
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 ggccaccagcccggcgatgg 425 |||||||||||||||||||| Sbjct: 214410 ggccaccagcccggcgatgg 214429
>emb|AL109947.19|HSJ919F19 Human DNA sequence from clone RP5-919F19 on chromosome 6q16.3-22.1 Contains the PPIL6 gene for peptidylprolyl isomerase (cyclophilin)-like 6 protein, the SMPD2 gene for sphingomyelin phosphodiesterase 2 neutral membrane (neutral sphingomyelinase), the MICAL1 gene for microtubule associated monoxygenase, calponin and LIM domain containing 1, the ZNF450 gene for zinc finger protein 450 and three CpG islands, complete sequence Length = 128960 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 ctgcctccatcctggcctcgcccc 389 ||||||||| |||||||||||||| Sbjct: 72126 ctgcctccaccctggcctcgcccc 72149
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ccggcgatggcgcccaggcc 435 |||||||||||||||||||| Sbjct: 38049 ccggcgatggcgcccaggcc 38068
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ccggcgatggcgcccaggcc 435 |||||||||||||||||||| Sbjct: 294736 ccggcgatggcgcccaggcc 294755
>emb|BX640548.14| Zebrafish DNA sequence from clone CH211-198E12 in linkage group 11, complete sequence Length = 231587 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 acgtacgtacgtacgtacag 363 |||||||||||||||||||| Sbjct: 121453 acgtacgtacgtacgtacag 121472
>gb|AE012142.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 50 of 460 of the complete genome Length = 10036 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 ccaccagcccggcgatggcg 427 |||||||||||||||||||| Sbjct: 3772 ccaccagcccggcgatggcg 3791
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 agcccggcgatggcgcccag 432 |||||||||||||||||||| Sbjct: 1604514 agcccggcgatggcgcccag 1604533
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 ccaccagcccggcgatggcg 427 |||||||||||||||||||| Sbjct: 545432 ccaccagcccggcgatggcg 545451
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 aacgtacgtacgtacgtaca 362 |||||||||||||||||||| Sbjct: 22913906 aacgtacgtacgtacgtaca 22913925 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 426 cgcccaggccagccaccgccgtggccct 453 |||||| ||||||| ||||||||||||| Sbjct: 19347842 cgcccatgccagcccccgccgtggccct 19347869
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 taacgtacgtacgtacgtac 361 |||||||||||||||||||| Sbjct: 19324750 taacgtacgtacgtacgtac 19324769
>gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genomic sequence, complete sequence Length = 140507 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 taacgtacgtacgtacgtac 361 |||||||||||||||||||| Sbjct: 114870 taacgtacgtacgtacgtac 114889
>gb|AC012494.8| Homo sapiens BAC clone RP11-312P13 from 2, complete sequence Length = 191122 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 aaaaagataaacaatgcaaatgaa 84 ||||||||| |||||||||||||| Sbjct: 153244 aaaaagatatacaatgcaaatgaa 153267
>gb|AC009414.4| Homo sapiens BAC clone RP11-490M8 from 2, complete sequence Length = 137557 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 tatgtaaaaagataaacaatgcaa 79 |||||||||| ||||||||||||| Sbjct: 76042 tatgtaaaaaaataaacaatgcaa 76019
>gb|AC084463.1|AC084463 Caenorhabditis briggsae cosmid CB037F21, complete sequence Length = 85644 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gtgactgccaaccacaacaa 254 |||||||||||||||||||| Sbjct: 68326 gtgactgccaaccacaacaa 68345
>dbj|AP007256.1| Danio rerio DNA, clone:DKEY-188F22, complete sequence Length = 155274 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 catgaatgaattatgtaaaa 64 |||||||||||||||||||| Sbjct: 30624 catgaatgaattatgtaaaa 30605
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 402 ccgcggccaccagcccggcgatggcgcccagg 433 |||||||||||||| |||| ||| |||||||| Sbjct: 6382614 ccgcggccaccagcgcggccatgacgcccagg 6382583
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 ccgcggccaccagcccggcgatgg 425 |||||||||||||||||| ||||| Sbjct: 3149801 ccgcggccaccagcccggtgatgg 3149824
>emb|BX294375.7| Zebrafish DNA sequence from clone DKEY-176M20 in linkage group 17, complete sequence Length = 188455 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 acatgaatgaattatgtaaa 63 |||||||||||||||||||| Sbjct: 25264 acatgaatgaattatgtaaa 25283
>emb|AJ223471.1|ZMPHYTII Zea mays PHYT II gene for acidic phytase Length = 2990 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 cagcccggcgatggcgccca 431 |||||||||||||||||||| Sbjct: 2360 cagcccggcgatggcgccca 2341
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 cggccaccagcccggcgatg 424 |||||||||||||||||||| Sbjct: 1504809 cggccaccagcccggcgatg 1504828
>dbj|AK067011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093K20, full insert sequence Length = 1494 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 taacgtacgtacgtacgtac 361 |||||||||||||||||||| Sbjct: 1401 taacgtacgtacgtacgtac 1382
>gb|AY109590.1| Zea mays CL1547_1 mRNA sequence Length = 1807 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 cagcccggcgatggcgccca 431 |||||||||||||||||||| Sbjct: 1070 cagcccggcgatggcgccca 1051
>emb|BX324221.6| Mouse DNA sequence from clone RP23-395D17 on chromosome X, complete sequence Length = 42786 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tatgtaaaaagataaacaat 75 |||||||||||||||||||| Sbjct: 29943 tatgtaaaaagataaacaat 29924
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 aacgtacgtacgtacgtaca 362 |||||||||||||||||||| Sbjct: 22842097 aacgtacgtacgtacgtaca 22842116 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 426 cgcccaggccagccaccgccgtggccct 453 |||||| ||||||| ||||||||||||| Sbjct: 19274069 cgcccatgccagcccccgccgtggccct 19274096
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 aacgtacgtacgtacgtaca 362 |||||||||||||||||||| Sbjct: 23183 aacgtacgtacgtacgtaca 23202
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 aacgtacgtacgtacgtaca 362 |||||||||||||||||||| Sbjct: 42938 aacgtacgtacgtacgtaca 42919
>emb|BX119952.3|CNS09S4V Oryza sativa chromosome 12, . BAC OSJNBb0022A20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131975 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 426 cgcccaggccagccaccgccgtggccct 453 |||||| ||||||| ||||||||||||| Sbjct: 53532 cgcccatgccagcccccgccgtggccct 53559
>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 426 cgcccaggccagccaccgccgtggccct 453 |||||| ||||||| ||||||||||||| Sbjct: 25536 cgcccatgccagcccccgccgtggccct 25563
>gb|U75531.1|ZMU75531 Zea mays phytase (phyS11) mRNA, complete cds Length = 1335 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 cagcccggcgatggcgccca 431 |||||||||||||||||||| Sbjct: 1057 cagcccggcgatggcgccca 1038
>emb|AL627128.16| Mouse DNA sequence from clone RP23-133J9 on chromosome 4, complete sequence Length = 183089 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 aacgtacgtacgtacgtaca 362 |||||||||||||||||||| Sbjct: 113111 aacgtacgtacgtacgtaca 113092
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 416 ccggcgatggcgcccaggccagcc 439 |||||||||||||| ||||||||| Sbjct: 872737 ccggcgatggcgccgaggccagcc 872714 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,015,542 Number of Sequences: 3902068 Number of extensions: 4015542 Number of successful extensions: 95249 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93853 Number of HSP's gapped (non-prelim): 1356 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
