ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
15E5_RAT (Q63003) 5E5 antigen 30 2.3
2ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 29 3.9
3HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated... 29 3.9
4UPPS_XANOR (Q5H1E5) Undecaprenyl pyrophosphate synthetase (EC 2.... 29 5.1

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 356 SAGEQGCRCARGRAPGAGELVGAEAQVHGQGGR-WAMDA 243
           S GE G    RGR  GAGE      +  G+GGR W  +A
Sbjct: 292 SPGEWGADVPRGRGEGAGEWGSDVPKDRGEGGREWGPEA 330



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>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase domain 19) (Meltrin beta)
          Length = 920

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
 Frame = +3

Query: 135  PRSWQRAQRRESHQRPLSS**MADASNLT*MCLKSWSVHRPSPP---LTMNLCFGTHQLA 305
            P +  R +R+ES +RP  S  M  A N    CL S    RP PP   L  N   G     
Sbjct: 821  PEAGARIERKESARRPPPSRPMPPAPN----CLLSQDFSRPRPPQKALPANPVPGQRTGP 876

Query: 306  GTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSP 407
             +G           TS +   TS   PP  P  P
Sbjct: 877  RSG----------GTSLLQPPTSGPQPPRPPAVP 900



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>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4 (Hyperpolarization-activated
            cation channel 4) (HAC-4)
          Length = 1175

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +3

Query: 255  PSPPLTMNLCFGTHQLAGTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSPA 410
            P+PP T      +H     G        PL T   S + S   PP  P +PA
Sbjct: 882  PTPPTTAGAAGFSHFHRALGGSLSSSDSPLLTPMQSAARSPQQPPPPPGAPA 933



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>UPPS_XANOR (Q5H1E5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 258

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 316 HPVPASWWVPKHKFMVKGGDGRW 248
           HPVP    VP+H  ++  G+GRW
Sbjct: 7   HPVPPVADVPRHIAIIMDGNGRW 29


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,597,605
Number of Sequences: 219361
Number of extensions: 1291924
Number of successful extensions: 3669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3651
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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