Clone Name | rbart21f12 |
---|---|
Clone Library Name | barley_pub |
>gb|BT018989.1| Zea mays clone Contig451.F mRNA sequence Length = 1213 Score = 153 bits (77), Expect = 6e-34 Identities = 128/145 (88%) Strand = Plus / Minus Query: 282 tcgccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggcc 341 |||||||||||||||| || ||||||||||| || |||||||||||||||||||||| Sbjct: 828 tcgccttcaacccagccgcggtgttcaagccccatacgcggacgtcgtcgatcaccggcc 769 Query: 342 cacacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgc 401 | |||||||||||||||||||| || |||||||||||||| |||||||||| ||| |||| Sbjct: 768 cgcacagcgagctgtggtcgtcactcctcgtgttgtagtacacgctgtagaacgccacgc 709 Query: 402 gtgacctctcggcgcgcgctgtgaa 426 ||| |||||| || ||||| ||||| Sbjct: 708 gtgtcctctcagcacgcgcagtgaa 684
>ref|NM_193187.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1017 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||||| Sbjct: 962 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 903 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 || |||||||||||||||||||||||||||||||| || |||||||||| ||| || || Sbjct: 902 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacgctgtagaacgccactcgc 843 Query: 404 gacctctcggcgcgcgctgtgaa 426 | |||||| || || |||||||| Sbjct: 842 gtcctctcagctcgtgctgtgaa 820
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Plus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||||| Sbjct: 19126425 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 19126484 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 || |||||||||||||||||||||||||||||||| || |||||||||| ||| || || Sbjct: 19126485 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacgctgtagaacgccactcgc 19126544 Query: 404 gacctctcggcgcgcgctgtgaa 426 | |||||| || || |||||||| Sbjct: 19126545 gtcctctcagctcgtgctgtgaa 19126567 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||||| Sbjct: 31746285 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 31746226 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || Sbjct: 31746225 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 31746166 Query: 404 gacctctcggcgcgcgctgtgaa 426 | |||||| || || |||||||| Sbjct: 31746165 gtcctctcagctcgtgctgtgaa 31746143 Score = 79.8 bits (40), Expect = 7e-12 Identities = 120/145 (82%), Gaps = 10/145 (6%) Strand = Plus / Minus Query: 58 atggcttgctactttcagaatcacacaagaaagcaacag-aacaaccatttatagctact 116 ||||| || ||||||| |||||||| ||||||||||||| |||| |||| |||||| | Sbjct: 31746534 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 31746475 Query: 117 ggtagcttgagcctaag--------ctcacattactcaatctcatagaaacctcaggctt 168 |||||||| |||||||| |||||||||||||| || |||||||| ||| |||| Sbjct: 31746474 ggtagctttagcctaagctcacaatctcacattactcaacctaatagaaacttcaagctt 31746415 Query: 169 actaacaaaactaagtggcctcctc 193 |||| ||||||| |||||||||||| Sbjct: 31746414 actaccaaaact-agtggcctcctc 31746391 Score = 79.8 bits (40), Expect = 7e-12 Identities = 120/145 (82%), Gaps = 10/145 (6%) Strand = Plus / Plus Query: 58 atggcttgctactttcagaatcacacaagaaagcaacagaa-caaccatttatagctact 116 ||||| || ||||||| |||||||| ||||||||||||||| || |||| |||||| | Sbjct: 19126176 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 19126235 Query: 117 ggtagcttgagcctaagctcaca--------ttactcaatctcatagaaacctcaggctt 168 |||||| | |||||||||||||| |||||||| ||||||||||| ||| |||| Sbjct: 19126236 ggtagccttagcctaagctcacaatctcacattactcaacctcatagaaacttcaagctt 19126295 Query: 169 actaacaaaactaagtggcctcctc 193 |||| ||||||| |||||||||||| Sbjct: 19126296 actaccaaaact-agtggcctcctc 19126319
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 149 bits (75), Expect = 9e-33 Identities = 126/143 (88%) Strand = Plus / Plus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||||| Sbjct: 91842 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 91901 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 || |||||||||||||||||||||||||||||||| || |||||||||| ||| || || Sbjct: 91902 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacgctgtagaacgccactcgc 91961 Query: 404 gacctctcggcgcgcgctgtgaa 426 | |||||| || || |||||||| Sbjct: 91962 gtcctctcagctcgtgctgtgaa 91984 Score = 79.8 bits (40), Expect = 7e-12 Identities = 120/145 (82%), Gaps = 10/145 (6%) Strand = Plus / Plus Query: 58 atggcttgctactttcagaatcacacaagaaagcaacagaa-caaccatttatagctact 116 ||||| || ||||||| |||||||| ||||||||||||||| || |||| |||||| | Sbjct: 91593 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 91652 Query: 117 ggtagcttgagcctaagctcaca--------ttactcaatctcatagaaacctcaggctt 168 |||||| | |||||||||||||| |||||||| ||||||||||| ||| |||| Sbjct: 91653 ggtagccttagcctaagctcacaatctcacattactcaacctcatagaaacttcaagctt 91712 Query: 169 actaacaaaactaagtggcctcctc 193 |||| ||||||| |||||||||||| Sbjct: 91713 actaccaaaact-agtggcctcctc 91736
>ref|NM_191286.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1200 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||||| Sbjct: 1145 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 1086 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || Sbjct: 1085 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 1026 Query: 404 gacctctcggcgcgcgctgtgaa 426 | |||||| || || |||||||| Sbjct: 1025 gtcctctcagctcgtgctgtgaa 1003
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1414_E05 Length = 105222 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||||| Sbjct: 24323 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 24264 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || Sbjct: 24263 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 24204 Query: 404 gacctctcggcgcgcgctgtgaa 426 | |||||| || || |||||||| Sbjct: 24203 gtcctctcagctcgtgctgtgaa 24181 Score = 79.8 bits (40), Expect = 7e-12 Identities = 120/145 (82%), Gaps = 10/145 (6%) Strand = Plus / Minus Query: 58 atggcttgctactttcagaatcacacaagaaagcaacag-aacaaccatttatagctact 116 ||||| || ||||||| |||||||| ||||||||||||| |||| |||| |||||| | Sbjct: 24572 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 24513 Query: 117 ggtagcttgagcctaag--------ctcacattactcaatctcatagaaacctcaggctt 168 |||||||| |||||||| |||||||||||||| || |||||||| ||| |||| Sbjct: 24512 ggtagctttagcctaagctcacaatctcacattactcaacctaatagaaacttcaagctt 24453 Query: 169 actaacaaaactaagtggcctcctc 193 |||| ||||||| |||||||||||| Sbjct: 24452 actaccaaaact-agtggcctcctc 24429
>dbj|AK102373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091N05, full insert sequence Length = 1630 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||||| Sbjct: 1290 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 1231 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || Sbjct: 1230 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 1171 Query: 404 gacctctcggcgcgcgctgtgaa 426 | |||||| || || |||||||| Sbjct: 1170 gtcctctcagctcgtgctgtgaa 1148 Score = 79.8 bits (40), Expect = 7e-12 Identities = 120/145 (82%), Gaps = 10/145 (6%) Strand = Plus / Minus Query: 58 atggcttgctactttcagaatcacacaagaaagcaacag-aacaaccatttatagctact 116 ||||| || ||||||| |||||||| ||||||||||||| |||| |||| |||||| | Sbjct: 1539 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 1480 Query: 117 ggtagcttgagcctaag--------ctcacattactcaatctcatagaaacctcaggctt 168 |||||||| |||||||| |||||||||||||| || |||||||| ||| |||| Sbjct: 1479 ggtagctttagcctaagctcacaatctcacattactcaacctaatagaaacttcaagctt 1420 Query: 169 actaacaaaactaagtggcctcctc 193 |||| ||||||| |||||||||||| Sbjct: 1419 actaccaaaact-agtggcctcctc 1396
>dbj|AK060989.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C09, full insert sequence Length = 1626 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||||||||||||||| ||||||||||||||||| || || || |||||||| |||||| Sbjct: 1291 gccttcaacccagcagctccattcaagccccagacgcgcacatcatcgatcactggccca 1232 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 || |||||||||||||||||||||||||||||||| || || ||||||| ||| || || Sbjct: 1231 cagagcgagctgtggtcgtcgcttctcgtgttgtaatacacactgtagaacgctacccgc 1172 Query: 404 gacctctcggcgcgcgctgtgaa 426 | |||||| || || |||||||| Sbjct: 1171 gtcctctcagctcgtgctgtgaa 1149 Score = 79.8 bits (40), Expect = 7e-12 Identities = 120/145 (82%), Gaps = 10/145 (6%) Strand = Plus / Minus Query: 58 atggcttgctactttcagaatcacacaagaaagcaacag-aacaaccatttatagctact 116 ||||| || ||||||| |||||||| ||||||||||||| |||| |||| |||||| | Sbjct: 1540 atggcatgttactttctgaatcacaaaagaaagcaacagaaacagccatacatagcttca 1481 Query: 117 ggtagcttgagcctaag--------ctcacattactcaatctcatagaaacctcaggctt 168 |||||||| |||||||| |||||||||||||| || |||||||| ||| |||| Sbjct: 1480 ggtagctttagcctaagctcacaatctcacattactcaacctaatagaaacttcaagctt 1421 Query: 169 actaacaaaactaagtggcctcctc 193 |||| ||||||| |||||||||||| Sbjct: 1420 actaccaaaact-agtggcctcctc 1397
>gb|AY596543.1| Saccharum officinarum clone SCCCCL4007B07, complete sequence Length = 1774 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 ||||| |||||||| || | ||||||||||| || |||||||||||||||||||| ||| Sbjct: 1425 gcctttaacccagccgctgcgttcaagccccatacccggacgtcgtcgatcaccggtcca 1366 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtaga 392 ||||| |||||||||||||| || |||||||||||||| |||||||||| Sbjct: 1365 cacagtgagctgtggtcgtcactcctcgtgttgtagtacacgctgtaga 1317
>gb|AY111554.1| Zea mays CL1493_2 mRNA sequence Length = 797 Score = 101 bits (51), Expect = 2e-18 Identities = 120/143 (83%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 |||||||||||||| || | ||||| |||| || ||||| ||||| |||||||| ||| Sbjct: 345 gccttcaacccagccgcggcgttcaatgcccatacccggacatcgtcaatcaccgggcca 286 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 |||||||||||||||||||| || |||||||||||||| ||||| |||| ||| || ||| Sbjct: 285 cacagcgagctgtggtcgtcactcctcgtgttgtagtacacgctatagaacgccacacgt 226 Query: 404 gacctctcggcgcgcgctgtgaa 426 | ||||| ||||| || ||||| Sbjct: 225 gttctctcagcgcgtgcagtgaa 203
>gb|AY108251.1| Zea mays PCO077043 mRNA sequence Length = 1664 Score = 93.7 bits (47), Expect = 4e-16 Identities = 119/143 (83%) Strand = Plus / Minus Query: 284 gccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggccca 343 |||||||||||||| || | ||||| |||| || ||||| ||||| |||||||| ||| Sbjct: 1377 gccttcaacccagccgcggcgttcaatgcccatacccggacatcgtcaatcaccgggcca 1318 Query: 344 cacagcgagctgtggtcgtcgcttctcgtgttgtagtagacgctgtagagcgcaacgcgt 403 |||||||||||||||||||| || ||||||||||| || ||||| |||| ||| || ||| Sbjct: 1317 cacagcgagctgtggtcgtcactcctcgtgttgtaatacacgctatagaacgccacacgt 1258 Query: 404 gacctctcggcgcgcgctgtgaa 426 | ||||| ||||| || ||||| Sbjct: 1257 gttctctcagcgcgtgcagtgaa 1235
>gb|AY106885.1| Zea mays PCO120977 mRNA sequence Length = 441 Score = 89.7 bits (45), Expect = 7e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 282 tcgccttcaacccagcagccccattcaagccccagacacggacgtcgtcgatcaccggcc 341 |||||||||||||||| || ||||||||||| || |||||||||||||||||||||| Sbjct: 358 tcgccttcaacccagccgcggtgttcaagccccatacgcggacgtcgtcgatcaccggcc 417 Query: 342 cacacagcgagctgtgg 358 | ||||||||||||||| Sbjct: 418 cgcacagcgagctgtgg 434
>ref|XM_464560.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1499 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 322 gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 379 ||||||||||||||||||||| || |||||||| ||||||||| || ||| ||||| Sbjct: 1243 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 1186
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 322 gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 379 ||||||||||||||||||||| || |||||||| ||||||||| || ||| ||||| Sbjct: 5912869 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 5912926
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 322 gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 379 ||||||||||||||||||||| || |||||||| ||||||||| || ||| ||||| Sbjct: 91090 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 91147
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 322 gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 379 ||||||||||||||||||||| || |||||||| ||||||||| || ||| ||||| Sbjct: 142671 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 142728
>dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D06, full insert sequence Length = 1498 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 322 gacgtcgtcgatcaccggcccacacagcgagctgtggtcgtcgcttctcgtgttgtag 379 ||||||||||||||||||||| || |||||||| ||||||||| || ||| ||||| Sbjct: 1242 gacgtcgtcgatcaccggcccgcagagcgagctcatgtcgtcgctcctggtgctgtag 1185
>gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, complete sequence Length = 187893 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 taaccatggcaataagaatccc 276 |||||||||||||||||||||| Sbjct: 54182 taaccatggcaataagaatccc 54161
>gb|AC146159.2| Pan troglodytes BAC clone RP43-36O19 from 7, complete sequence Length = 163991 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 taaccatggcaataagaatccc 276 |||||||||||||||||||||| Sbjct: 335 taaccatggcaataagaatccc 314
>gb|AC018664.11| Homo sapiens chromosome 7 clone RP11-109E9, complete sequence Length = 114848 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 taaccatggcaataagaatccc 276 |||||||||||||||||||||| Sbjct: 92864 taaccatggcaataagaatccc 92843
>gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-15, complete sequence Length = 178635 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 taaccatggcaataagaatccc 276 |||||||||||||||||||||| Sbjct: 4136 taaccatggcaataagaatccc 4115
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gacgtcgtcgatcaccggccc 342 ||||||||||||||||||||| Sbjct: 5508680 gacgtcgtcgatcaccggccc 5508660
>gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome 10, complete sequence Length = 202804 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 tcacatatgtagtatatatt 229 |||||||||||||||||||| Sbjct: 72137 tcacatatgtagtatatatt 72156
>gb|AC153597.13| Mus musculus 6 BAC RP23-18K9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197694 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 55 atcatggcttgctactttcagaatcaca 82 |||||| |||||| |||||||||||||| Sbjct: 128212 atcatgacttgcttctttcagaatcaca 128239
>emb|Z71183.2|HSN28H9 Human DNA sequence from clone LL22NC03-28H9 on chromosome 22 Contains the 3' end of the FBXO7 gene for F-box protein 7 and the 3' end of the SYN3 gene for Synapsin III, complete sequence Length = 28900 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 atatgtagtatatattcagaacag 237 |||||||||| ||||||||||||| Sbjct: 10709 atatgtagtaaatattcagaacag 10732
>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence Length = 238662 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 caagaaagcaacagaacaac 102 |||||||||||||||||||| Sbjct: 175152 caagaaagcaacagaacaac 175171
>gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosome 18, complete sequence Length = 195721 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 caagaaagcaacagaacaac 102 |||||||||||||||||||| Sbjct: 111829 caagaaagcaacagaacaac 111848
>gb|AE012042.1| Xanthomonas axonopodis pv. citri str. 306, section 420 of 469 of the complete genome Length = 13441 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 393 gcgcaacgcgtgacctctcggcgc 416 ||||||||||||||||||| |||| Sbjct: 5953 gcgcaacgcgtgacctctccgcgc 5976
>gb|AC080088.5| Homo sapiens BAC clone RP11-716B14 from 4, complete sequence Length = 71463 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 tcacacaagaaagcaacaga 97 |||||||||||||||||||| Sbjct: 30306 tcacacaagaaagcaacaga 30325
>gb|AC078953.20| Homo sapiens 3 BAC RP11-370M22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159667 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ttcaacccagcagccccatt 306 |||||||||||||||||||| Sbjct: 9527 ttcaacccagcagccccatt 9508
>ref|XM_690191.1| PREDICTED: Danio rerio similar to phosphodiesterase 4D interacting protein isoform 5 (LOC566905), mRNA Length = 8442 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aaagcaacagaacaaccatt 106 |||||||||||||||||||| Sbjct: 2853 aaagcaacagaacaaccatt 2872
>dbj|AK047278.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930044N05 product:hypothetical protein, full insert sequence Length = 1224 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tcacatatgtagtatatatt 229 |||||||||||||||||||| Sbjct: 1180 tcacatatgtagtatatatt 1161
>gb|AC146083.5| Pan troglodytes BAC clone RP43-56I21 from chromosome 7, complete sequence Length = 177922 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ttcaacccagcagccccatt 306 |||||||||||||||||||| Sbjct: 136825 ttcaacccagcagccccatt 136844
>gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7, complete sequence Length = 201762 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ttcaacccagcagccccatt 306 |||||||||||||||||||| Sbjct: 179652 ttcaacccagcagccccatt 179633
>dbj|AB020754.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYN8 Length = 54528 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctttcagaatcacacaagaa 88 |||||||||||||||||||| Sbjct: 19250 ctttcagaatcacacaagaa 19231
>emb|BX255903.3| Zebrafish DNA sequence from clone CH211-242B18 in linkage group 20, complete sequence Length = 117796 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aaagcaacagaacaaccatt 106 |||||||||||||||||||| Sbjct: 40949 aaagcaacagaacaaccatt 40930
>emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 in linkage group 20, complete sequence Length = 146407 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 tgttgtagtagacgctgtag 391 |||||||||||||||||||| Sbjct: 120428 tgttgtagtagacgctgtag 120447
>emb|AL845277.11| Mouse DNA sequence from clone RP23-35J6 on chromosome 2, complete sequence Length = 225087 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 acaaccatttatagctactg 117 |||||||||||||||||||| Sbjct: 139454 acaaccatttatagctactg 139435 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,905,375 Number of Sequences: 3902068 Number of extensions: 2905375 Number of successful extensions: 53917 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53770 Number of HSP's gapped (non-prelim): 139 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)