ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYIM_MACFA (Q4R646) Isoleucyl-tRNA synthetase, mitochondrial pre... 30 1.7
2SYIM_MOUSE (Q8BIJ6) Isoleucyl-tRNA synthetase, mitochondrial pre... 29 2.9
3SYIM_HUMAN (Q9NSE4) Isoleucyl-tRNA synthetase, mitochondrial pre... 29 2.9
4MOK12_SCHPO (Q9UUL4) Cell wall alpha-1,3-glucan synthase mok12 (... 28 6.4

>SYIM_MACFA (Q4R646) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) (Fragment)
          Length = 993

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 82  LLHWTIRDEFILTSQTMPHLCICISQHG 165
           + H   +DE+++ SQT+ H+   + QHG
Sbjct: 515 VFHHKTKDEYLINSQTIEHIVKLVEQHG 542



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>SYIM_MOUSE (Q8BIJ6) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
          Length = 1012

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  LLHWTIRDEFILTSQTMPHLCICISQHG 165
           + H   +DE+++ SQT  H+   + QHG
Sbjct: 534 VFHHKTKDEYLINSQTTEHIIKLVEQHG 561



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>SYIM_HUMAN (Q9NSE4) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
          Length = 1012

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  LLHWTIRDEFILTSQTMPHLCICISQHG 165
           + H   +DE+++ SQT  H+   + QHG
Sbjct: 534 VFHHKTKDEYLINSQTTEHIVKLVEQHG 561



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>MOK12_SCHPO (Q9UUL4) Cell wall alpha-1,3-glucan synthase mok12 (EC 2.4.1.183)|
          Length = 2352

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 16   SLFHIRKQACMKWLHIG*HIYQLLH 90
            S+F+I K  C K++  G H++ LLH
Sbjct: 1351 SIFNIEKDICTKYVQFG-HVFNLLH 1374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,609,961
Number of Sequences: 219361
Number of extensions: 747564
Number of successful extensions: 1538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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