ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome... 42 0.73
2gb|AC132306.3| Mus musculus BAC clone RP24-289O21 from 3, comple... 42 0.73
3gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.9
4gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, com... 40 2.9
5gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, comp... 40 2.9
6gb|AC008615.8| Homo sapiens chromosome 5 clone CTB-144A14, compl... 40 2.9
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
8dbj|AK069708.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9

>gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome 13, complete sequence
          Length = 157586

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 134    cacacttgtgtatatgtatat 154
              |||||||||||||||||||||
Sbjct: 112981 cacacttgtgtatatgtatat 113001



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>gb|AC132306.3| Mus musculus BAC clone RP24-289O21 from 3, complete sequence
          Length = 151208

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 149    gtatatcccaacatgggcttc 169
              |||||||||||||||||||||
Sbjct: 103389 gtatatcccaacatgggcttc 103409



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>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06,
             complete sequence
          Length = 136143

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 110   tcatccttacatcccagaccatgccacacttg 141
             |||||||| |||||| |||| |||||||||||
Sbjct: 17094 tcatccttgcatccctgaccctgccacacttg 17125



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>gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, complete sequence
          Length = 134552

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aatacaaatttcagtctatt 23
             ||||||||||||||||||||
Sbjct: 51635 aatacaaatttcagtctatt 51654



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>gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, complete sequence
          Length = 193872

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    acacttgtgtatatgtatat 154
              ||||||||||||||||||||
Sbjct: 111695 acacttgtgtatatgtatat 111714



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>gb|AC008615.8| Homo sapiens chromosome 5 clone CTB-144A14, complete sequence
          Length = 115306

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   tgtgtatatgtatatcccaa 159
             ||||||||||||||||||||
Sbjct: 48923 tgtgtatatgtatatcccaa 48942



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 110      tcatccttacatcccagaccatgccacacttg 141
                |||||||| |||||| |||| |||||||||||
Sbjct: 17640336 tcatccttgcatccctgaccctgccacacttg 17640367



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>dbj|AK069708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031M23, full
            insert sequence
          Length = 2455

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 110  tcatccttacatcccagaccatgccacacttg 141
            |||||||| |||||| |||| |||||||||||
Sbjct: 1388 tcatccttgcatccctgaccctgccacacttg 1357


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,472,999
Number of Sequences: 3902068
Number of extensions: 2472999
Number of successful extensions: 223454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 223337
Number of HSP's gapped (non-prelim): 117
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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