ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469515.1| Oryza sativa (japonica cultivar-group), mRNA 84 5e-13
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 84 5e-13
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
4gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 84 5e-13
5emb|X88799.1|OSRNAATH2 O.sativa mRNA for AT hook-containing prot... 84 5e-13
6gb|AC163680.2| Mus musculus BAC clone RP24-111M15 from chromosom... 44 0.40
7gb|AC134406.14| Mus musculus chromosome 9, clone RP24-349J23, co... 42 1.6
8emb|CR854838.13| Zebrafish DNA sequence from clone CH211-130H14 ... 42 1.6
9gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete... 42 1.6
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
11dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
12emb|BX005151.5| Zebrafish DNA sequence from clone CH211-11M20, c... 42 1.6
13gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Can... 40 6.2
14gb|AC159114.7| Mus musculus BAC RP23-370L19 (Roswell Park Cance... 40 6.2
15gb|AC125270.7| Mus musculus chromosome 5, clone RP24-150L20, com... 40 6.2
16dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 40 6.2 
>ref|XM_469515.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 972

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 388 ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 429
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 455



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 gaattagaacaacacgaacggagaaa 313
           ||||||||||||||||||||||||||
Sbjct: 613 gaattagaacaacacgaacggagaaa 588
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                          
Query: 388      ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 429
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28446665 ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 28446706



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 288      gaattagaacaacacgaacggagaaa 313
                ||||||||||||||||||||||||||
Sbjct: 28446548 gaattagaacaacacgaacggagaaa 28446573
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                          
Query: 388      ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 429
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28537989 ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 28538030



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 288      gaattagaacaacacgaacggagaaa 313
                ||||||||||||||||||||||||||
Sbjct: 28537872 gaattagaacaacacgaacggagaaa 28537897
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>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
             sequence
          Length = 143681

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                       
Query: 388   ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 429
             ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40795 ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 40836



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 288   gaattagaacaacacgaacggagaaa 313
             ||||||||||||||||||||||||||
Sbjct: 40678 gaattagaacaacacgaacggagaaa 40703
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>emb|X88799.1|OSRNAATH2 O.sativa mRNA for AT hook-containing protein (850 bp)
          Length = 850

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 388 ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 429
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctcacacgaagccgacctcggcgaactgcgggcgcggcttgg 301



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 288 gaattagaacaacacgaacggagaaa 313
           ||||||||||||||||||||||||||
Sbjct: 459 gaattagaacaacacgaacggagaaa 434
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>gb|AC163680.2| Mus musculus BAC clone RP24-111M15 from chromosome 8, complete sequence
          Length = 207917

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 135   acagagatacagagggatacac 156
             ||||||||||||||||||||||
Sbjct: 35938 acagagatacagagggatacac 35917
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>gb|AC134406.14| Mus musculus chromosome 9, clone RP24-349J23, complete sequence
          Length = 192663

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   gacacaccacccacactcact 238
             |||||||||||||||||||||
Sbjct: 25644 gacacaccacccacactcact 25664
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>emb|CR854838.13| Zebrafish DNA sequence from clone CH211-130H14 in linkage group 13,
              complete sequence
          Length = 154065

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      acaaaaatcaatgtgattcac 25
              |||||||||||||||||||||
Sbjct: 141061 acaaaaatcaatgtgattcac 141081
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>gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete sequence
          Length = 237678

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   gacacaccacccacactcact 238
             |||||||||||||||||||||
Sbjct: 52501 gacacaccacccacactcact 52481
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 207      caccacggactgacacaccac 227
                |||||||||||||||||||||
Sbjct: 42724423 caccacggactgacacaccac 42724443
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>dbj|AP003448.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1656_A11
          Length = 148887

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 207   caccacggactgacacaccac 227
             |||||||||||||||||||||
Sbjct: 57188 caccacggactgacacaccac 57208
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>emb|BX005151.5| Zebrafish DNA sequence from clone CH211-11M20, complete sequence
          Length = 142257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     acaaaaatcaatgtgattcac 25
             |||||||||||||||||||||
Sbjct: 11451 acaaaaatcaatgtgattcac 11431
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>gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 153084

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      acaaaaatcaatgtgattca 24
              ||||||||||||||||||||
Sbjct: 118847 acaaaaatcaatgtgattca 118828
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>gb|AC159114.7| Mus musculus  BAC RP23-370L19 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 169393

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     acaaaaatcaatgtgattca 24
             ||||||||||||||||||||
Sbjct: 96215 acaaaaatcaatgtgattca 96234
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>gb|AC125270.7| Mus musculus chromosome 5, clone RP24-150L20, complete sequence
          Length = 174834

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   ccacccacactcactcaccg 243
             ||||||||||||||||||||
Sbjct: 90409 ccacccacactcactcaccg 90390
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>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   gcgcggcttggtcgtggtgg 438
             ||||||||||||||||||||
Sbjct: 90956 gcgcggcttggtcgtggtgg 90937


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,248,875
Number of Sequences: 3902068
Number of extensions: 3248875
Number of successful extensions: 56327
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56257
Number of HSP's gapped (non-prelim): 70
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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