ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469911.1| Oryza sativa (japonica cultivar-group), mRNA 163 7e-37
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 163 7e-37
3gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 163 7e-37
4gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 163 7e-37
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 163 7e-37
6dbj|AK104279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 7e-37
7dbj|AK098932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 7e-37
8dbj|AK073052.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 7e-37
9emb|AL669969.14| Mouse DNA sequence from clone RP23-254J18 on ch... 48 0.028
10gb|AC108767.10| Mus musculus chromosome 3, clone RP24-377E5, com... 44 0.44
11gb|AC124773.4| Mus musculus BAC clone RP23-49B23 from 3, complet... 44 0.44
12gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, comple... 44 0.44
13gb|AC009117.8| Homo sapiens chromosome 16 clone RP11-481E4, comp... 44 0.44
14dbj|AP006540.1| Lotus japonicus genomic DNA, chromosome 2, clone... 44 0.44
15gb|AC154091.1| Homo sapiens chromosome 11 clone fa0692, complete... 42 1.8
16emb|CT025598.9| Mouse DNA sequence from clone RP23-218L3 on chro... 42 1.8
17emb|AL596325.5| Human DNA sequence from clone RP11-359K18 on chr... 42 1.8
18emb|AL359208.14| Human DNA sequence from clone RP11-320N6 on chr... 42 1.8
19emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BA... 42 1.8
20gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map... 42 1.8
21dbj|AP007216.1| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.8
22gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, compl... 42 1.8
23gb|U64854.3| Caenorhabditis elegans cosmid K11C4, complete sequence 40 6.9
24gb|AE006075.1| Pasteurella multocida subsp. multocida str. Pm70 ... 40 6.9
25ref|XM_802133.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.9
26gb|AC121807.3| Mus musculus BAC clone RP23-448N11 from chromosom... 40 6.9
27gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, comple... 40 6.9
28gb|AC121859.2| Mus musculus BAC clone RP24-104F15 from 6, comple... 40 6.9
29ref|XM_761222.1| Theileria parva strain Muguga chromosome 1 vacu... 40 6.9
30ref|XM_948889.1| Theileria annulata strain Ankara hypothetical p... 40 6.9
31emb|AL671972.8| Human DNA sequence from clone RP11-341A19 on chr... 40 6.9
32emb|AL451136.11| Human DNA sequence from clone RP11-291L19 on ch... 40 6.9
33emb|AL512601.18| Human DNA sequence from clone RP11-500B3 on chr... 40 6.9
34emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on ch... 40 6.9
35emb|AL161905.15| Human DNA sequence from clone RP11-554O14 on ch... 40 6.9
36gb|AC182435.3| Mus musculus chromosome 8, clone wi1-1119F24, com... 40 6.9
37emb|CR858275.1| Pongo pygmaeus mRNA; cDNA DKFZp469L1210 (from cl... 40 6.9
38gb|AC107015.6| Homo sapiens 3 BAC RP11-124D9 (Roswell Park Cance... 40 6.9
39dbj|AK132665.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.9
40gb|AC025766.4| Homo sapiens chromosome 5 clone CTC-303L1, comple... 40 6.9
41gb|AC154639.2| Mus musculus BAC clone RP23-306D9 from chromosome... 40 6.9
42gb|AC155990.2| Xenopus tropicalis clone ISB1-282D1, complete seq... 40 6.9
43gb|AC152932.2| Xenopus tropicalis clone ISB1-31M3, complete sequ... 40 6.9
44gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, comple... 40 6.9
45gb|AC108697.3| Homo sapiens 3 BAC RP11-8N23 (Roswell Park Cancer... 40 6.9
46gb|AF117325.1|AF117325 Sigmodon hispiedis prion protein (PrP) ge... 40 6.9
47gb|AF117324.1|AF117324 Sigmodon fulviventer prion protein (PrP) ... 40 6.9
48emb|AL117355.5|CNS01DRL Human chromosome 14 DNA sequence BAC R-3... 40 6.9
49emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chr... 40 6.9
50gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 6.9
51emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on ch... 40 6.9 
>ref|XM_469911.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1220

 Score =  163 bits (82), Expect = 7e-37
 Identities = 160/186 (86%)
 Strand = Plus / Minus

                                                                       
Query: 328 tagccatgacttctgggatcagcaacttgatggacttttctgaattccgcgctcgagtat 387
           |||||||| ||||| ||||||||||||||||| ||||||| | |||| || |||||| ||
Sbjct: 823 tagccatggcttcttggatcagcaacttgatgaacttttcgggattctgcactcgagaat 764

                                                                       
Query: 388 tgaccaacggctcgtgcatgaggtatcgttggatcaccagatgccagagaaaccacatta 447
           || |||||  | |||||||||||||  || || ||||| || || |||| ||||||||||
Sbjct: 763 tggccaacaacccgtgcatgaggtacagtgggctcaccggaagcaagagcaaccacatta 704

                                                                       
Query: 448 tcaagaaaatattgtcttggaagcttcccaacaacatttccttcctcatttccttcctta 507
           ||||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||| 
Sbjct: 703 tcaagaaaatattgttttggaagtctcccaacaacattgccttcctcatttccctccttg 644

                 
Query: 508 tccaga 513
           ||||||
Sbjct: 643 tccaga 638
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  163 bits (82), Expect = 7e-37
 Identities = 160/186 (86%)
 Strand = Plus / Plus

                                                                            
Query: 328      tagccatgacttctgggatcagcaacttgatggacttttctgaattccgcgctcgagtat 387
                |||||||| ||||| ||||||||||||||||| ||||||| | |||| || |||||| ||
Sbjct: 31475130 tagccatggcttcttggatcagcaacttgatgaacttttcgggattctgcactcgagaat 31475189

                                                                            
Query: 388      tgaccaacggctcgtgcatgaggtatcgttggatcaccagatgccagagaaaccacatta 447
                || |||||  | |||||||||||||  || || ||||| || || |||| ||||||||||
Sbjct: 31475190 tggccaacaacccgtgcatgaggtacagtgggctcaccggaagcaagagcaaccacatta 31475249

                                                                            
Query: 448      tcaagaaaatattgtcttggaagcttcccaacaacatttccttcctcatttccttcctta 507
                ||||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||| 
Sbjct: 31475250 tcaagaaaatattgttttggaagtctcccaacaacattgccttcctcatttccctccttg 31475309

                      
Query: 508      tccaga 513
                ||||||
Sbjct: 31475310 tccaga 31475315
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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
              sequence
          Length = 133449

 Score =  163 bits (82), Expect = 7e-37
 Identities = 160/186 (86%)
 Strand = Plus / Minus

                                                                          
Query: 328    tagccatgacttctgggatcagcaacttgatggacttttctgaattccgcgctcgagtat 387
              |||||||| ||||| ||||||||||||||||| ||||||| | |||| || |||||| ||
Sbjct: 117466 tagccatggcttcttggatcagcaacttgatgaacttttcgggattctgcactcgagaat 117407

                                                                          
Query: 388    tgaccaacggctcgtgcatgaggtatcgttggatcaccagatgccagagaaaccacatta 447
              || |||||  | |||||||||||||  || || ||||| || || |||| ||||||||||
Sbjct: 117406 tggccaacaacccgtgcatgaggtacagtgggctcaccggaagcaagagcaaccacatta 117347

                                                                          
Query: 448    tcaagaaaatattgtcttggaagcttcccaacaacatttccttcctcatttccttcctta 507
              ||||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||| 
Sbjct: 117346 tcaagaaaatattgttttggaagtctcccaacaacattgccttcctcatttccctccttg 117287

                    
Query: 508    tccaga 513
              ||||||
Sbjct: 117286 tccaga 117281
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
             sequence
          Length = 159091

 Score =  163 bits (82), Expect = 7e-37
 Identities = 160/186 (86%)
 Strand = Plus / Minus

                                                                         
Query: 328   tagccatgacttctgggatcagcaacttgatggacttttctgaattccgcgctcgagtat 387
             |||||||| ||||| ||||||||||||||||| ||||||| | |||| || |||||| ||
Sbjct: 20670 tagccatggcttcttggatcagcaacttgatgaacttttcgggattctgcactcgagaat 20611

                                                                         
Query: 388   tgaccaacggctcgtgcatgaggtatcgttggatcaccagatgccagagaaaccacatta 447
             || |||||  | |||||||||||||  || || ||||| || || |||| ||||||||||
Sbjct: 20610 tggccaacaacccgtgcatgaggtacagtgggctcaccggaagcaagagcaaccacatta 20551

                                                                         
Query: 448   tcaagaaaatattgtcttggaagcttcccaacaacatttccttcctcatttccttcctta 507
             ||||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||| 
Sbjct: 20550 tcaagaaaatattgttttggaagtctcccaacaacattgccttcctcatttccctccttg 20491

                   
Query: 508   tccaga 513
             ||||||
Sbjct: 20490 tccaga 20485
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  163 bits (82), Expect = 7e-37
 Identities = 160/186 (86%)
 Strand = Plus / Plus

                                                                            
Query: 328      tagccatgacttctgggatcagcaacttgatggacttttctgaattccgcgctcgagtat 387
                |||||||| ||||| ||||||||||||||||| ||||||| | |||| || |||||| ||
Sbjct: 31565646 tagccatggcttcttggatcagcaacttgatgaacttttcgggattctgcactcgagaat 31565705

                                                                            
Query: 388      tgaccaacggctcgtgcatgaggtatcgttggatcaccagatgccagagaaaccacatta 447
                || |||||  | |||||||||||||  || || ||||| || || |||| ||||||||||
Sbjct: 31565706 tggccaacaacccgtgcatgaggtacagtgggctcaccggaagcaagagcaaccacatta 31565765

                                                                            
Query: 448      tcaagaaaatattgtcttggaagcttcccaacaacatttccttcctcatttccttcctta 507
                ||||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||| 
Sbjct: 31565766 tcaagaaaatattgttttggaagtctcccaacaacattgccttcctcatttccctccttg 31565825

                      
Query: 508      tccaga 513
                ||||||
Sbjct: 31565826 tccaga 31565831
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>dbj|AK104279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-F07, full
           insert sequence
          Length = 1255

 Score =  163 bits (82), Expect = 7e-37
 Identities = 160/186 (86%)
 Strand = Plus / Minus

                                                                       
Query: 328 tagccatgacttctgggatcagcaacttgatggacttttctgaattccgcgctcgagtat 387
           |||||||| ||||| ||||||||||||||||| ||||||| | |||| || |||||| ||
Sbjct: 841 tagccatggcttcttggatcagcaacttgatgaacttttcgggattctgcactcgagaat 782

                                                                       
Query: 388 tgaccaacggctcgtgcatgaggtatcgttggatcaccagatgccagagaaaccacatta 447
           || |||||  | |||||||||||||  || || ||||| || || |||| ||||||||||
Sbjct: 781 tggccaacaacccgtgcatgaggtacagtgggctcaccggaagcaagagcaaccacatta 722

                                                                       
Query: 448 tcaagaaaatattgtcttggaagcttcccaacaacatttccttcctcatttccttcctta 507
           ||||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||| 
Sbjct: 721 tcaagaaaatattgttttggaagtctcccaacaacattgccttcctcatttccctccttg 662

                 
Query: 508 tccaga 513
           ||||||
Sbjct: 661 tccaga 656
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>dbj|AK098932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025I21, full
           insert sequence
          Length = 1238

 Score =  163 bits (82), Expect = 7e-37
 Identities = 160/186 (86%)
 Strand = Plus / Minus

                                                                       
Query: 328 tagccatgacttctgggatcagcaacttgatggacttttctgaattccgcgctcgagtat 387
           |||||||| ||||| ||||||||||||||||| ||||||| | |||| || |||||| ||
Sbjct: 849 tagccatggcttcttggatcagcaacttgatgaacttttcgggattctgcactcgagaat 790

                                                                       
Query: 388 tgaccaacggctcgtgcatgaggtatcgttggatcaccagatgccagagaaaccacatta 447
           || |||||  | |||||||||||||  || || ||||| || || |||| ||||||||||
Sbjct: 789 tggccaacaacccgtgcatgaggtacagtgggctcaccggaagcaagagcaaccacatta 730

                                                                       
Query: 448 tcaagaaaatattgtcttggaagcttcccaacaacatttccttcctcatttccttcctta 507
           ||||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||| 
Sbjct: 729 tcaagaaaatattgttttggaagtctcccaacaacattgccttcctcatttccctccttg 670

                 
Query: 508 tccaga 513
           ||||||
Sbjct: 669 tccaga 664
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>dbj|AK073052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003G10, full
           insert sequence
          Length = 1248

 Score =  163 bits (82), Expect = 7e-37
 Identities = 160/186 (86%)
 Strand = Plus / Minus

                                                                       
Query: 328 tagccatgacttctgggatcagcaacttgatggacttttctgaattccgcgctcgagtat 387
           |||||||| ||||| ||||||||||||||||| ||||||| | |||| || |||||| ||
Sbjct: 851 tagccatggcttcttggatcagcaacttgatgaacttttcgggattctgcactcgagaat 792

                                                                       
Query: 388 tgaccaacggctcgtgcatgaggtatcgttggatcaccagatgccagagaaaccacatta 447
           || |||||  | |||||||||||||  || || ||||| || || |||| ||||||||||
Sbjct: 791 tggccaacaacccgtgcatgaggtacagtgggctcaccggaagcaagagcaaccacatta 732

                                                                       
Query: 448 tcaagaaaatattgtcttggaagcttcccaacaacatttccttcctcatttccttcctta 507
           ||||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||| 
Sbjct: 731 tcaagaaaatattgttttggaagtctcccaacaacattgccttcctcatttccctccttg 672

                 
Query: 508 tccaga 513
           ||||||
Sbjct: 671 tccaga 666
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>emb|AL669969.14| Mouse DNA sequence from clone RP23-254J18 on chromosome 11, complete
             sequence
          Length = 127045

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 482   catttccttcctcatttccttcct 505
             ||||||||||||||||||||||||
Sbjct: 95918 catttccttcctcatttccttcct 95895
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>gb|AC108767.10| Mus musculus chromosome 3, clone RP24-377E5, complete sequence
          Length = 167878

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 483    atttccttcctcatttccttccttat 508
              ||||||||||| ||||||||||||||
Sbjct: 140769 atttccttccttatttccttccttat 140744



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 483    atttccttcctcatttccttcctt 506
              ||||||||||| ||||||||||||
Sbjct: 140733 atttccttccttatttccttcctt 140710
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>gb|AC124773.4| Mus musculus BAC clone RP23-49B23 from 3, complete sequence
          Length = 216860

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 483   atttccttcctcatttccttccttat 508
             ||||||||||| ||||||||||||||
Sbjct: 29727 atttccttccttatttccttccttat 29702



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 483   atttccttcctcatttccttcctt 506
             ||||||||||| ||||||||||||
Sbjct: 29691 atttccttccttatttccttcctt 29668
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>gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, complete sequence
          Length = 158216

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 444    attatcaagaaaatattgtctt 465
              ||||||||||||||||||||||
Sbjct: 127121 attatcaagaaaatattgtctt 127100
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>gb|AC009117.8| Homo sapiens chromosome 16 clone RP11-481E4, complete sequence
          Length = 172868

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 444   attatcaagaaaatattgtctt 465
             ||||||||||||||||||||||
Sbjct: 10224 attatcaagaaaatattgtctt 10203
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>dbj|AP006540.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01C03, TM0559,
             complete sequence
          Length = 80535

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 326   tctagccatgacttctgggatcagcaacttgatg 359
             |||| ||||||||||| |||||| ||||||||||
Sbjct: 22170 tctaaccatgacttcttggatcaacaacttgatg 22203
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>gb|AC154091.1| Homo sapiens chromosome 11 clone fa0692, complete sequence
          Length = 40524

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 482   catttccttcctcatttccttcctt 506
             ||||||||||||| |||||||||||
Sbjct: 23787 catttccttcctcttttccttcctt 23811
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>emb|CT025598.9| Mouse DNA sequence from clone RP23-218L3 on chromosome 13, complete
            sequence
          Length = 228266

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 485  ttccttcctcatttccttcct 505
            |||||||||||||||||||||
Sbjct: 5923 ttccttcctcatttccttcct 5903
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>emb|AL596325.5| Human DNA sequence from clone RP11-359K18 on chromosome 1 Contains
              ubiquinol-cytochrome c reductase binding (UQCRB)
              pseudogene, the UAP1 gene for UDP-N-acteylglucosamine
              pyrophosphorylase 1,  the 5' end of the DDR2 gene for
              discoidin domain receptor family member 2 and a CpG island,
              complete sequence
          Length = 152770

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 484    tttccttcctcatttccttccttat 508
              ||||||||||| |||||||||||||
Sbjct: 125024 tttccttcctcttttccttccttat 125048
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>emb|AL359208.14| Human DNA sequence from clone RP11-320N6 on chromosome 13, complete
            sequence
          Length = 139649

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 484  tttccttcctcatttccttccttat 508
            |||||||||| ||||||||||||||
Sbjct: 2303 tttccttccttatttccttccttat 2279
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>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19
          Length = 95993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 444   attatcaagaaaatattgtct 464
             |||||||||||||||||||||
Sbjct: 75313 attatcaagaaaatattgtct 75333
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>gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete
             sequence
          Length = 116217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 441   cacattatcaagaaaatattg 461
             |||||||||||||||||||||
Sbjct: 65850 cacattatcaagaaaatattg 65830
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>dbj|AP007216.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-643C9, complete
             sequence
          Length = 100462

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 482   catttccttcctcatttccttcctt 506
             ||||||||||||| |||||||||||
Sbjct: 74642 catttccttcctcttttccttcctt 74618
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>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence
          Length = 167628

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 485  ttccttcctcatttccttcct 505
            |||||||||||||||||||||
Sbjct: 2385 ttccttcctcatttccttcct 2405
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>gb|U64854.3| Caenorhabditis elegans cosmid K11C4, complete sequence
          Length = 43184

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   caatgccacaatcatataca 162
             ||||||||||||||||||||
Sbjct: 13058 caatgccacaatcatataca 13077
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>gb|AE006075.1| Pasteurella multocida subsp. multocida str. Pm70 section 42 of 204 of
            the complete genome
          Length = 12233

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 182  ccattttaatgtgatttctgcatt 205
            ||||| ||||||||||||||||||
Sbjct: 6998 ccattataatgtgatttctgcatt 7021
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>ref|XM_802133.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053503487.70) partial mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  cgcccaaattcttggctcca 242
            ||||||||||||||||||||
Sbjct: 1119 cgcccaaattcttggctcca 1138
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>gb|AC121807.3| Mus musculus BAC clone RP23-448N11 from chromosome 16, complete sequence
          Length = 178155

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 483    atttccttcctcatttccttcctt 506
              |||||||||||| |||||||||||
Sbjct: 122892 atttccttcctcctttccttcctt 122869
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>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    tccttcctcatttccttcct 505
              ||||||||||||||||||||
Sbjct: 163395 tccttcctcatttccttcct 163376
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>gb|AC121859.2| Mus musculus BAC clone RP24-104F15 from 6, complete sequence
          Length = 205084

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 234    ttggctccaagactgaacatgcct 257
              ||||| ||||||||||||||||||
Sbjct: 113148 ttggccccaagactgaacatgcct 113125
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>ref|XM_761222.1| Theileria parva strain Muguga chromosome 1 vacuolar sorting protein
            35 (TP01_0794) partial mRNA
          Length = 2454

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 481  acatttccttcctcatttcc 500
            ||||||||||||||||||||
Sbjct: 1336 acatttccttcctcatttcc 1317
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>ref|XM_948889.1| Theileria annulata strain Ankara hypothetical protein (TA05695)
            partial mRNA
          Length = 2493

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 481  acatttccttcctcatttcc 500
            ||||||||||||||||||||
Sbjct: 1393 acatttccttcctcatttcc 1374
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>emb|AL671972.8| Human DNA sequence from clone RP11-341A19 on chromosome 10 Contains the
             3' end of the MRF2 gene for modulator recognition factor
             2, complete sequence
          Length = 163336

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 487   ccttcctcatttccttcctt 506
             ||||||||||||||||||||
Sbjct: 82848 ccttcctcatttccttcctt 82867
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>emb|AL451136.11| Human DNA sequence from clone RP11-291L19 on chromosome 1 Contains the
             5' end of the TESK2 gene for testis-specific kinase 2, a
             peptidylprolyl isomerase A (cyclophilin A) (PPIA)
             pseudogene, a novel gene, a novel gene (DKFZP564I122) and
             the 3' end of the PRDX1 gene for peroxiredoxin 1, complete
             sequence
          Length = 137143

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    gcatgcatctgtttcttttt 36
             ||||||||||||||||||||
Sbjct: 18759 gcatgcatctgtttcttttt 18740
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>emb|AL512601.18| Human DNA sequence from clone RP11-500B3 on chromosome 9 Contains the
             5' end of a novel gene, complete sequence
          Length = 165517

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   agccaaatgcctgaatcaga 129
             ||||||||||||||||||||
Sbjct: 11395 agccaaatgcctgaatcaga 11376
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>emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on chromosome 10 Contains
             part of the CACNB2 gene for calcium channel
             voltage-dependent beta 2 subunit and a novel gene,
             complete sequence
          Length = 177656

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   tcctcatttccttccttatc 509
             ||||||||||||||||||||
Sbjct: 66920 tcctcatttccttccttatc 66939
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>emb|AL161905.15| Human DNA sequence from clone RP11-554O14 on chromosome 6 Contains part
              of the SUPT3H gene for suppressor of Ty 3 homolog (S.
              cerevisiae), complete sequence
          Length = 176968

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 482    catttccttcctcatttccttcct 505
              ||||||||||||||||| ||||||
Sbjct: 115280 catttccttcctcatttacttcct 115303
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>gb|AC182435.3| Mus musculus chromosome 8, clone wi1-1119F24, complete sequence
          Length = 37516

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   cttcctcatttccttcctta 507
             ||||||||||||||||||||
Sbjct: 33745 cttcctcatttccttcctta 33726
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>emb|CR858275.1| Pongo pygmaeus mRNA; cDNA DKFZp469L1210 (from clone DKFZp469L1210)
          Length = 6542

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 487  ccttcctcatttccttcctt 506
            ||||||||||||||||||||
Sbjct: 5694 ccttcctcatttccttcctt 5713
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>gb|AC107015.6| Homo sapiens 3 BAC RP11-124D9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156277

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   aacactgatcctgctgccat 185
             ||||||||||||||||||||
Sbjct: 67471 aacactgatcctgctgccat 67452
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>dbj|AK132665.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921516K14 product:unclassifiable, full
           insert sequence
          Length = 1237

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 316 aagagttatttctagccatg 335
           ||||||||||||||||||||
Sbjct: 44  aagagttatttctagccatg 25
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>gb|AC025766.4| Homo sapiens chromosome 5 clone CTC-303L1, complete sequence
          Length = 83705

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   aatcatatacacgaaacact 171
             ||||||||||||||||||||
Sbjct: 41747 aatcatatacacgaaacact 41766
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>gb|AC154639.2| Mus musculus BAC clone RP23-306D9 from chromosome 13, complete sequence
          Length = 187693

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   aagagttatttctagccatg 335
             ||||||||||||||||||||
Sbjct: 39692 aagagttatttctagccatg 39673
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>gb|AC155990.2| Xenopus tropicalis clone ISB1-282D1, complete sequence
          Length = 95725

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   acaacatttccttcctcatt 497
             ||||||||||||||||||||
Sbjct: 35865 acaacatttccttcctcatt 35846
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>gb|AC152932.2| Xenopus tropicalis clone ISB1-31M3, complete sequence
          Length = 78419

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   acaacatttccttcctcatt 497
             ||||||||||||||||||||
Sbjct: 66810 acaacatttccttcctcatt 66791
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>gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   atagcaatgaagagttattt 326
             ||||||||||||||||||||
Sbjct: 94287 atagcaatgaagagttattt 94306
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>gb|AC108697.3| Homo sapiens 3 BAC RP11-8N23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163737

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aacactgatcctgctgccat 185
              ||||||||||||||||||||
Sbjct: 151947 aacactgatcctgctgccat 151928
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>gb|AF117325.1|AF117325 Sigmodon hispiedis prion protein (PrP) gene, complete cds
          Length = 765

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 490 tcctcatttccttccttatc 509
           ||||||||||||||||||||
Sbjct: 728 tcctcatttccttccttatc 747
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>gb|AF117324.1|AF117324 Sigmodon fulviventer prion protein (PrP) gene, partial cds
          Length = 762

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 490 tcctcatttccttccttatc 509
           ||||||||||||||||||||
Sbjct: 728 tcctcatttccttccttatc 747
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>emb|AL117355.5|CNS01DRL Human chromosome 14 DNA sequence BAC R-354E14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174933

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   ttcctcatttccttccttat 508
             ||||||||||||||||||||
Sbjct: 84785 ttcctcatttccttccttat 84804
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>emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chromosome 2, complete
             sequence
          Length = 208765

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   aatgcctgaatcagataatccact 138
             |||| |||||||||||||||||||
Sbjct: 33074 aatggctgaatcagataatccact 33097
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    tttaatgtgatttctgcatt 205
              ||||||||||||||||||||
Sbjct: 379675 tttaatgtgatttctgcatt 379694
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>emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on chromosome 4, complete
              sequence
          Length = 224031

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 483    atttccttcctcatttccttcctt 506
              ||||||||||| ||||||||||||
Sbjct: 140178 atttccttccttatttccttcctt 140201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,039,631
Number of Sequences: 3902068
Number of extensions: 5039631
Number of successful extensions: 118331
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118157
Number of HSP's gapped (non-prelim): 174
length of query: 513
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 490
effective length of database: 17,143,297,704
effective search space: 8400215874960
effective search space used: 8400215874960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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