ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_194553.1| Oryza sativa (japonica cultivar-group) putative... 123 5e-25
2gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 123 5e-25
3gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica culti... 123 5e-25
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
5dbj|AK104730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
6dbj|AK104633.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
7dbj|AK061462.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
8tpe|BN000654.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 123 5e-25
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 123 5e-25
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 2e-18
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
12gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare str... 101 2e-18
13dbj|AK104936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
14dbj|AK068353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
15tpe|BN000568.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 101 2e-18
16gb|AY110228.1| Zea mays CL32412_1 mRNA sequence 66 1e-07
17gb|AY106507.1| Zea mays PCO076057 mRNA sequence 58 3e-05
18ref|NM_120756.2| Arabidopsis thaliana peroxidase AT5G06730 mRNA,... 52 0.002
19gb|AY519360.1| Arabidopsis thaliana peroxidase ATP29a gene, comp... 52 0.002
20emb|Y11794.1|ATP29A A.thaliana mRNA for peroxidase ATP29a, partial 52 0.002
21gb|BT008584.1| Arabidopsis thaliana clone U51349 putative peroxi... 52 0.002
22emb|BX831603.1|CNS0A10N Arabidopsis thaliana Full-length cDNA Co... 52 0.002
23gb|AY088509.1| Arabidopsis thaliana clone 7360 mRNA, complete se... 52 0.002
24dbj|AP002032.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.002
25dbj|AK118827.1| Arabidopsis thaliana At5g06730 mRNA for putative... 52 0.002
26ref|NM_194528.1| Oryza sativa (japonica cultivar-group) putative... 50 0.006
27gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
28tpe|BN000653.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 50 0.006
29dbj|AP006408.1| Lotus japonicus genomic DNA, chromosome 4, clone... 48 0.025
30dbj|AK042057.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 44 0.38
31emb|BX470219.6| Zebrafish DNA sequence from clone DKEYP-104C8 in... 44 0.38
32gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cance... 44 0.38
33emb|AL935140.6| Zebrafish DNA sequence from clone DKEYP-122E7 in... 44 0.38
34gb|AC145968.3| Pan troglodytes BAC clone RP43-12H15 from 7, comp... 42 1.5
35gb|AC092021.4| Homo sapiens BAC clone RP11-420H12 from 7, comple... 42 1.5
36gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete se... 42 1.5
37emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O... 42 1.5
38gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome... 42 1.5
39emb|AL928671.6| Zebrafish DNA sequence from clone CH211-39M14, c... 42 1.5
40emb|AL672184.13| Mouse DNA sequence from clone RP23-421G11 on ch... 42 1.5
41gb|AY857760.1| Triticum monococcum peroxidase 6 (POX6) mRNA, com... 40 6.0
42gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.0
43gb|AC008308.9| Drosophila melanogaster clone BACR10M16, complete... 40 6.0
44gb|AY521529.1| Brassica napus acid isoperoxidase (podA) mRNA, pa... 40 6.0
45gb|AY227666.1| Lycopersicon esculentum myo inositol monophosphat... 40 6.0
46emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1-55f1... 40 6.0
47gb|AC099681.4| Homo sapiens BAC clone RP11-310H4 from 7, complet... 40 6.0
48gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, com... 40 6.0
49gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete se... 40 6.0
50emb|AL607130.8| Human DNA sequence from clone RP11-80C17 on chro... 40 6.0
51emb|AL158840.14| Human DNA sequence from clone RP11-181B18 on ch... 40 6.0
52emb|AL158837.14| Human DNA sequence from clone RP11-102C16 on ch... 40 6.0
53emb|AL136359.13| Human DNA sequence from clone RP11-24H2 on chro... 40 6.0
54emb|BX072578.10| Zebrafish DNA sequence from clone CH211-286A10 ... 40 6.0
55gb|AC073173.7| Homo sapiens chromosome 10 clone RP11-183D3, comp... 40 6.0
56gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, comp... 40 6.0
57gb|AF479623.1| Ficus carica peroxidase mRNA, complete cds 40 6.0
58gb|AC018683.4|AC018683 Homo sapiens BAC clone RP11-423P14 from 4... 40 6.0
59gb|AC009344.8|AC009344 Drosophila melanogaster, chromosome 3R, r... 40 6.0
60dbj|AB178953.2| Nicotiana tabacum NtPOX1 mRNA for peroxidase, co... 40 6.0
61gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71... 40 6.0
62gb|AC144762.3| Mus musculus BAC clone RP24-95D6 from 3, complete... 40 6.0
63gb|U16727.1|MTU16727 Medicago truncatula peroxidase precursor (r... 40 6.0
64emb|AL772378.8| Mouse DNA sequence from clone RP23-106C4 on chro... 40 6.0
65emb|AJ421480.1| Mus musculus X-inactivation center region; segme... 40 6.0

>ref|NM_194553.1| Oryza sativa (japonica cultivar-group) putative peroxidase
           (OSJNBa0015O22.19), mRNA
          Length = 1011

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Minus

                                                                       
Query: 247 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
           ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 944 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 885

                                                                       
Query: 307 ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
           | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 884 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 825

                                                                       
Query: 367 gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
           ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 824 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 765

                         
Query: 427 ggcgtcgtcgggtc 440
           ||||||||||||||
Sbjct: 764 ggcgtcgtcgggtc 751



to top

>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Plus

                                                                          
Query: 247    cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
              ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 635077 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635136

                                                                          
Query: 307    ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
              | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 635137 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 635196

                                                                          
Query: 367    gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
              ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 635197 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 635256

                            
Query: 427    ggcgtcgtcgggtc 440
              ||||||||||||||
Sbjct: 635257 ggcgtcgtcgggtc 635270



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 241    atgttccccatcttgatcatagaattcgcgaagctactgaagaag 285
              |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 461759 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461803



to top

>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
              Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete
              sequence
          Length = 189349

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Plus

                                                                          
Query: 247    cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
              ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 102685 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 102744

                                                                          
Query: 307    ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
              | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 102745 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 102804

                                                                          
Query: 367    gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
              ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 102805 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 102864

                            
Query: 427    ggcgtcgtcgggtc 440
              ||||||||||||||
Sbjct: 102865 ggcgtcgtcgggtc 102878



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Plus

                                                                          
Query: 247    cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
              ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 635077 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635136

                                                                          
Query: 307    ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
              | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 635137 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 635196

                                                                          
Query: 367    gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
              ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 635197 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 635256

                            
Query: 427    ggcgtcgtcgggtc 440
              ||||||||||||||
Sbjct: 635257 ggcgtcgtcgggtc 635270



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 241    atgttccccatcttgatcatagaattcgcgaagctactgaagaag 285
              |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 461759 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461803



to top

>dbj|AK104730.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C06, full
            insert sequence
          Length = 1447

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
            ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 1003 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 944

                                                                        
Query: 307  ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
            | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 943  cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 884

                                                                        
Query: 367  gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
            ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 883  gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 824

                          
Query: 427  ggcgtcgtcgggtc 440
            ||||||||||||||
Sbjct: 823  ggcgtcgtcgggtc 810



to top

>dbj|AK104633.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C08, full
           insert sequence
          Length = 1382

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Minus

                                                                       
Query: 247 cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
           ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 938 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 879

                                                                       
Query: 307 ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
           | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 878 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 819

                                                                       
Query: 367 gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
           ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 818 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 759

                         
Query: 427 ggcgtcgtcgggtc 440
           ||||||||||||||
Sbjct: 758 ggcgtcgtcgggtc 745



to top

>dbj|AK061462.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B11, full
            insert sequence
          Length = 1447

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
            ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 1003 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 944

                                                                        
Query: 307  ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
            | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 943  cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 884

                                                                        
Query: 367  gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
            ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 883  gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 824

                          
Query: 427  ggcgtcgtcgggtc 440
            ||||||||||||||
Sbjct: 823  ggcgtcgtcgggtc 810



to top

>tpe|BN000654.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx125 gene for
            class III peroxidase 125 precursor, exons 1-3
          Length = 2806

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
            ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 2739 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 2680

                                                                        
Query: 307  ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
            | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 2679 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 2620

                                                                        
Query: 367  gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
            ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 2619 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 2560

                          
Query: 427  ggcgtcgtcgggtc 440
            ||||||||||||||
Sbjct: 2559 ggcgtcgtcgggtc 2546



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Plus

                                                                          
Query: 247    cccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctgcccgcgaac 306
              ||||| |||||||| || | ||||||||| | |||||||||| ||||||||   ||||| 
Sbjct: 635074 cccatgttgatcatggactgcgcgaagctgcggaagaaggcggcctggctggtggcgaag 635133

                                                                          
Query: 307    ctgccgacgatcggcgccgtcgtccccgccgcgctggggtctgacttgagctcctggtca 366
              | | ||||||| |||||||||||||| | |||    ||  | ||||||||||||||||| 
Sbjct: 635134 cggtcgacgatgggcgccgtcgtcccggtcgcctccggcgccgacttgagctcctggtcc 635193

                                                                          
Query: 367    gactgcaggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaagttgtca 426
              ||||| |||||||||||||| ||||||| ||| ||| ||||||  ||||||||| |||| 
Sbjct: 635194 gactggaggaagccgcggttgacctcgatgttggtgtagtagtggttgtcgaaggtgtcc 635253

                            
Query: 427    ggcgtcgtcgggtc 440
              ||||||||||||||
Sbjct: 635254 ggcgtcgtcgggtc 635267



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 241    atgttccccatcttgatcatagaattcgcgaagctactgaagaag 285
              |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 461756 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 461800



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                           
Query: 354     gagctcctggtcagactgcaggaagccgcggttcacctcgaggttcgtgaagtagttctt 413
               |||||||||||| ||||| |||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 7094782 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 7094841

                                          
Query: 414     gtcgaagttgtcaggcgtcgtcgggtc 440
               |||||||  ||| ||||| ||||||||
Sbjct: 7094842 gtcgaaggcgtccggcgtggtcgggtc 7094868



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                           
Query: 354     gagctcctggtcagactgcaggaagccgcggttcacctcgaggttcgtgaagtagttctt 413
               |||||||||||| ||||| |||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 7092677 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 7092736

                                          
Query: 414     gtcgaagttgtcaggcgtcgtcgggtc 440
               |||||||  ||| ||||| ||||||||
Sbjct: 7092737 gtcgaaggcgtccggcgtggtcgggtc 7092763



to top

>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0049C20, from chromosome 3, complete sequence
          Length = 136098

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                         
Query: 354   gagctcctggtcagactgcaggaagccgcggttcacctcgaggttcgtgaagtagttctt 413
             |||||||||||| ||||| |||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 99556 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 99497

                                        
Query: 414   gtcgaagttgtcaggcgtcgtcgggtc 440
             |||||||  ||| ||||| ||||||||
Sbjct: 99496 gtcgaaggcgtccggcgtggtcgggtc 99470



to top

>dbj|AK104936.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G10, full
           insert sequence
          Length = 1202

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                       
Query: 354 gagctcctggtcagactgcaggaagccgcggttcacctcgaggttcgtgaagtagttctt 413
           |||||||||||| ||||| |||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 942 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 883

                                      
Query: 414 gtcgaagttgtcaggcgtcgtcgggtc 440
           |||||||  ||| ||||| ||||||||
Sbjct: 882 gtcgaaggcgtccggcgtggtcgggtc 856



to top

>dbj|AK068353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013142D12, full
           insert sequence
          Length = 1201

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                       
Query: 354 gagctcctggtcagactgcaggaagccgcggttcacctcgaggttcgtgaagtagttctt 413
           |||||||||||| ||||| |||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 943 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 884

                                      
Query: 414 gtcgaagttgtcaggcgtcgtcgggtc 440
           |||||||  ||| ||||| ||||||||
Sbjct: 883 gtcgaaggcgtccggcgtggtcgggtc 857



to top

>tpe|BN000568.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx39 gene for
            class III peroxidase 39 precursor, exons 1-4
          Length = 2005

 Score =  101 bits (51), Expect = 2e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                        
Query: 354  gagctcctggtcagactgcaggaagccgcggttcacctcgaggttcgtgaagtagttctt 413
            |||||||||||| ||||| |||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1834 gagctcctggtcggactggaggaagccgcggttcacctcgatgttggcgaagtagttctt 1775

                                       
Query: 414  gtcgaagttgtcaggcgtcgtcgggtc 440
            |||||||  ||| ||||| ||||||||
Sbjct: 1774 gtcgaaggcgtccggcgtggtcgggtc 1748



to top

>gb|AY110228.1| Zea mays CL32412_1 mRNA sequence
          Length = 1199

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                       
Query: 226 tccgtgaccggcctaatgttccccatcttgatcatagaattcgcgaagctactgaagaag 285
           ||||||| |||| | ||||||||||| |||||||| || | |||||||||   |||||||
Sbjct: 260 tccgtgagcggcttgatgttccccatgttgatcatggactgcgcgaagctcgcgaagaag 319

                                                    
Query: 286 gcgtcctggctgcccgcgaacctgccgacgatcggcgccgt 326
            |||| |||||| ||||||||  | ||||||| ||||||||
Sbjct: 320 tcgtcttggctggccgcgaactggtcgacgatgggcgccgt 360



to top

>gb|AY106507.1| Zea mays PCO076057 mRNA sequence
          Length = 902

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 241 atgttccccatcttgatcatagaattcgcgaagctactgaagaaggcgtcctggctg 297
           ||||| ||||| |||||||| || | ||||||||| |||||||||||| ||||||||
Sbjct: 602 atgttgcccatgttgatcatggactgcgcgaagctgctgaagaaggcggcctggctg 546



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 373 aggaagccgcggttcacctcgaggttcgtgaagtagttcttgtcgaa 419
           |||||||| ||||||||||| ||||| ||| ||||||  ||||||||
Sbjct: 471 aggaagccccggttcacctccaggttggtgtagtagtggttgtcgaa 425



to top

>ref|NM_120756.2| Arabidopsis thaliana peroxidase AT5G06730 mRNA, complete cds
          Length = 1392

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 238  ctaatgttccccatcttgatcataga 263
            ||||||||||||||||||||||||||
Sbjct: 1013 ctaatgttccccatcttgatcataga 988



to top

>gb|AY519360.1| Arabidopsis thaliana peroxidase ATP29a gene, complete cds
          Length = 1414

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 238  ctaatgttccccatcttgatcataga 263
            ||||||||||||||||||||||||||
Sbjct: 1287 ctaatgttccccatcttgatcataga 1262



to top

>emb|Y11794.1|ATP29A A.thaliana mRNA for peroxidase ATP29a, partial
          Length = 753

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 238 ctaatgttccccatcttgatcataga 263
           ||||||||||||||||||||||||||
Sbjct: 317 ctaatgttccccatcttgatcataga 292



to top

>gb|BT008584.1| Arabidopsis thaliana clone U51349 putative peroxidase (At5g06730)
           mRNA, complete cds
          Length = 1108

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 238 ctaatgttccccatcttgatcataga 263
           ||||||||||||||||||||||||||
Sbjct: 950 ctaatgttccccatcttgatcataga 925



to top

>emb|BX831603.1|CNS0A10N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH18ZC08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1372

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 238 ctaatgttccccatcttgatcataga 263
           ||||||||||||||||||||||||||
Sbjct: 996 ctaatgttccccatcttgatcataga 971



to top

>gb|AY088509.1| Arabidopsis thaliana clone 7360 mRNA, complete sequence
          Length = 1351

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 238  ctaatgttccccatcttgatcataga 263
            ||||||||||||||||||||||||||
Sbjct: 1007 ctaatgttccccatcttgatcataga 982



to top

>dbj|AP002032.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15
          Length = 71277

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 238   ctaatgttccccatcttgatcataga 263
             ||||||||||||||||||||||||||
Sbjct: 30587 ctaatgttccccatcttgatcataga 30612



to top

>dbj|AK118827.1| Arabidopsis thaliana At5g06730 mRNA for putative peroxidase, complete
            cds, clone: RAFL21-16-B10
          Length = 1296

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 238  ctaatgttccccatcttgatcataga 263
            ||||||||||||||||||||||||||
Sbjct: 1013 ctaatgttccccatcttgatcataga 988



to top

>ref|NM_194528.1| Oryza sativa (japonica cultivar-group) putative copia-type
            polyprotein (OSJNBa0065H03.10), mRNA
          Length = 4053

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 241  atgttccccatcttgatcatagaattcgcgaagctactgaagaag 285
            |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 3986 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 3942



to top

>gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0065H03, complete sequence
          Length = 141017

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 241   atgttccccatcttgatcatagaattcgcgaagctactgaagaag 285
             |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 65933 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 65977



to top

>tpe|BN000653.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx124 gene for
            class III peroxidase 124 precursor, exons 1-2
          Length = 6789

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 241  atgttccccatcttgatcatagaattcgcgaagctactgaagaag 285
            |||||||||||||||||||| ||   ||||||||| |||||||||
Sbjct: 6722 atgttccccatcttgatcatcgacgccgcgaagctcctgaagaag 6678



to top

>dbj|AP006408.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT23O19, TM0297b,
             complete sequence
          Length = 43490

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 239   taatgttccccatcttgatcatagaatt 266
             |||| |||||||||||||||||||||||
Sbjct: 22628 taatattccccatcttgatcatagaatt 22601



to top

>dbj|AK042057.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630054P20 product:unclassifiable, full
            insert sequence
          Length = 1823

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 46   atgaaatgtttacatattggtt 67
            ||||||||||||||||||||||
Sbjct: 1394 atgaaatgtttacatattggtt 1373



to top

>emb|BX470219.6| Zebrafish DNA sequence from clone DKEYP-104C8 in linkage group 9,
             complete sequence
          Length = 177086

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 22    ttccacatcagagaacaagcat 43
             ||||||||||||||||||||||
Sbjct: 39159 ttccacatcagagaacaagcat 39138



to top

>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195726

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 46     atgaaatgtttacatattggtt 67
              ||||||||||||||||||||||
Sbjct: 122482 atgaaatgtttacatattggtt 122503



to top

>emb|AL935140.6| Zebrafish DNA sequence from clone DKEYP-122E7 in linkage group 9,
             complete sequence
          Length = 83763

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 35    aacaagcatgcatgaaatgtttacat 60
             ||||| ||||||||||||||||||||
Sbjct: 76651 aacaaacatgcatgaaatgtttacat 76676



to top

>gb|AC145968.3| Pan troglodytes BAC clone RP43-12H15 from 7, complete sequence
          Length = 192898

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 142    tgtatatgtatatccaaacat 162
              |||||||||||||||||||||
Sbjct: 140214 tgtatatgtatatccaaacat 140234



to top

>gb|AC092021.4| Homo sapiens BAC clone RP11-420H12 from 7, complete sequence
          Length = 37083

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   tgtatatgtatatccaaacat 162
             |||||||||||||||||||||
Sbjct: 23371 tgtatatgtatatccaaacat 23351



to top

>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence
          Length = 117113

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   atccaagaccatgccacactt 140
             |||||||||||||||||||||
Sbjct: 58645 atccaagaccatgccacactt 58625



to top

>emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O18 on chromosome 1p32.3-34.1
            Contains GSSs, complete sequence
          Length = 101453

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 142  tgtatatgtatatccaaacat 162
            |||||||||||||||||||||
Sbjct: 4204 tgtatatgtatatccaaacat 4224



to top

>gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome 13, complete sequence
          Length = 157586

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 134    cacacttgtgtatatgtatat 154
              |||||||||||||||||||||
Sbjct: 112981 cacacttgtgtatatgtatat 113001



to top

>emb|AL928671.6| Zebrafish DNA sequence from clone CH211-39M14, complete sequence
          Length = 173481

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     aaatgtttacatattggttga 69
              |||||||||||||||||||||
Sbjct: 116711 aaatgtttacatattggttga 116731



to top

>emb|AL672184.13| Mouse DNA sequence from clone RP23-421G11 on chromosome X, complete
              sequence
          Length = 211206

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 349    gacttgagctcctggtcagac 369
              |||||||||||||||||||||
Sbjct: 115110 gacttgagctcctggtcagac 115090



to top

>gb|AY857760.1| Triticum monococcum peroxidase 6 (POX6) mRNA, complete cds
          Length = 1308

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 atgttccccatcttgatcat 260
           ||||||||||||||||||||
Sbjct: 971 atgttccccatcttgatcat 952



to top

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 318     cggcgccgtcgtccccgccg 337
               ||||||||||||||||||||
Sbjct: 1647365 cggcgccgtcgtccccgccg 1647384



to top

>gb|AC008308.9| Drosophila melanogaster clone BACR10M16, complete sequence
          Length = 196423

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    tgtgtatatgtatatccaaa 159
              ||||||||||||||||||||
Sbjct: 142117 tgtgtatatgtatatccaaa 142136



to top

>gb|AY521529.1| Brassica napus acid isoperoxidase (podA) mRNA, partial cds
          Length = 762

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 229 gtgaccggcctaatgttccccatcttgatcat 260
           |||| ||| |||||||||||||| ||||||||
Sbjct: 749 gtgaacggactaatgttccccattttgatcat 718



to top

>gb|AY227666.1| Lycopersicon esculentum myo inositol monophosphatase isoform 1
            (IMP-1) gene, complete cds
          Length = 5874

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   aatgtttacatattggttga 69
            ||||||||||||||||||||
Sbjct: 2433 aatgtttacatattggttga 2452



to top

>emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1-55f11, COMPLETE SEQUENCE
          Length = 102868

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   atgttccccatcttgatcatagaa 264
             ||||||||||||||||||| ||||
Sbjct: 91904 atgttccccatcttgatcaaagaa 91881



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   atgttccccatcttgatcatagaa 264
             ||||||||||||||||||| ||||
Sbjct: 65786 atgttccccatcttgatcaaagaa 65763



to top

>gb|AC099681.4| Homo sapiens BAC clone RP11-310H4 from 7, complete sequence
          Length = 97787

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 140   tgtgtatatgtatatccaaacatg 163
             |||||||||||||||| |||||||
Sbjct: 48384 tgtgtatatgtatatcaaaacatg 48361



to top

>gb|AC164406.5| Mus musculus chromosome 3, clone RP24-391L20, complete sequence
          Length = 134552

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aatacaaatttcagtctatt 23
             ||||||||||||||||||||
Sbjct: 51635 aatacaaatttcagtctatt 51654



to top

>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence
          Length = 83007

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 241   atgttccccatcttgatcatagaa 264
             ||||||||||||||||||| ||||
Sbjct: 73196 atgttccccatcttgatcaaagaa 73219



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 241   atgttccccatcttgatcatagaa 264
             ||||||||||||||||||| ||||
Sbjct: 47078 atgttccccatcttgatcaaagaa 47101



to top

>emb|AL607130.8| Human DNA sequence from clone RP11-80C17 on chromosome 10, complete
            sequence
          Length = 10455

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 139  ttgtgtatatgtatatccaaacat 162
            ||||||||||||||||| ||||||
Sbjct: 9047 ttgtgtatatgtatatcaaaacat 9024



to top

>emb|AL158840.14| Human DNA sequence from clone RP11-181B18 on chromosome 1 Contains part
             of gene KIAA1365 and a novel gene, complete sequence
          Length = 87665

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gcatgcatgaaatgtttacatatt 63
             ||||||||||||||||| ||||||
Sbjct: 40661 gcatgcatgaaatgtttccatatt 40684



to top

>emb|AL158837.14| Human DNA sequence from clone RP11-102C16 on chromosome 1 Contains the
             gene for a novel protein (FLJ14904, FLJ29032,
             DKFZp434L0217), a novel gene, the GPA33 gene for
             glycoprotein A33 (transmembrane), the gene for novel
             protein (FLJ37495) and three CpG islands, complete
             sequence
          Length = 148849

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    atgcatgaaatgtttacata 61
             ||||||||||||||||||||
Sbjct: 45845 atgcatgaaatgtttacata 45864



to top

>emb|AL136359.13| Human DNA sequence from clone RP11-24H2 on chromosome 13 Contains a
              pseudogene similar to part of protocadherin 8 (PCDH8), a
              novel gene and a CpG island, complete sequence
          Length = 176056

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    aatgttccccatcttgatca 259
              ||||||||||||||||||||
Sbjct: 160417 aatgttccccatcttgatca 160398



to top

>emb|BX072578.10| Zebrafish DNA sequence from clone CH211-286A10 in linkage group 5,
              complete sequence
          Length = 183498

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     gcatgcatgaaatgtttaca 59
              ||||||||||||||||||||
Sbjct: 162877 gcatgcatgaaatgtttaca 162858



to top

>gb|AC073173.7| Homo sapiens chromosome 10 clone RP11-183D3, complete sequence
          Length = 114611

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 139 ttgtgtatatgtatatccaaacat 162
           ||||||||||||||||| ||||||
Sbjct: 592 ttgtgtatatgtatatcaaaacat 569



to top

>gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, complete sequence
          Length = 193872

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    acacttgtgtatatgtatat 154
              ||||||||||||||||||||
Sbjct: 111695 acacttgtgtatatgtatat 111714



to top

>gb|AF479623.1| Ficus carica peroxidase mRNA, complete cds
          Length = 1267

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 237 cctaatgttccccatcttgatcat 260
           |||||| |||||||||||||||||
Sbjct: 947 cctaatattccccatcttgatcat 924



to top

>gb|AC018683.4|AC018683 Homo sapiens BAC clone RP11-423P14 from 4, complete sequence
          Length = 201907

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 140    tgtgtatatgtatatccaaacatg 163
              ||||||||||||||| ||||||||
Sbjct: 136591 tgtgtatatgtatatacaaacatg 136568



to top

>gb|AC009344.8|AC009344 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
              BACR20N14, complete sequence
          Length = 173634

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tgtgtatatgtatatccaaa 159
              ||||||||||||||||||||
Sbjct: 147543 tgtgtatatgtatatccaaa 147524



to top

>dbj|AB178953.2| Nicotiana tabacum NtPOX1 mRNA for peroxidase, complete cds
          Length = 1339

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  gttccccatcttgatcatag 262
            ||||||||||||||||||||
Sbjct: 1054 gttccccatcttgatcatag 1035



to top

>gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71 of 118 of the complete
              sequence
          Length = 235707

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tgtgtatatgtatatccaaa 159
              ||||||||||||||||||||
Sbjct: 215832 tgtgtatatgtatatccaaa 215813



to top

>gb|AC144762.3| Mus musculus BAC clone RP24-95D6 from 3, complete sequence
          Length = 198005

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tgtgtatatgtatatccaaa 159
              ||||||||||||||||||||
Sbjct: 135235 tgtgtatatgtatatccaaa 135216



to top

>gb|U16727.1|MTU16727 Medicago truncatula peroxidase precursor (rip1) gene, complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 241  atgttccccatcttgatcatagaa 264
            ||||||||||||||||||| ||||
Sbjct: 2608 atgttccccatcttgatcaaagaa 2585



to top

>emb|AL772378.8| Mouse DNA sequence from clone RP23-106C4 on chromosome X, complete
             sequence
          Length = 109193

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   ctgacttgagctcctggtca 366
             ||||||||||||||||||||
Sbjct: 81416 ctgacttgagctcctggtca 81435



to top

>emb|AJ421480.1| Mus musculus X-inactivation center region; segment 3/3
          Length = 214384

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   ctgacttgagctcctggtca 366
             ||||||||||||||||||||
Sbjct: 68176 ctgacttgagctcctggtca 68157


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,794,001
Number of Sequences: 3902068
Number of extensions: 3794001
Number of successful extensions: 85957
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85676
Number of HSP's gapped (non-prelim): 281
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top