ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21f01 |
|---|---|
| Clone Library Name | barley_pub |
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 77.8 bits (190), Expect = 1e-14 Identities = 36/39 (92%), Positives = 37/39 (94%) Frame = -2 Query: 415 DAKEKKGLLGKIMDKLPGYHKTGEEDKAAAPSGEHKPRA 299 DAKEKKGLLGKIMDKLPGYHKTGEEDKAAA +GEHKP A Sbjct: 224 DAKEKKGLLGKIMDKLPGYHKTGEEDKAAAATGEHKPSA 262 Score = 28.9 bits (63), Expect = 6.7 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHKTGEEDKAAAPSGEHKPRA*SPPCPET------HHRTSI 257 K+KKGL K+ KLPG+ T GEH +P P + HH T + Sbjct: 107 KKKKGLKEKLQGKLPGHKDT---------EGEHVTGLPAPAAPASVQTHGGHHDTDV 154
>ERD10_ARATH (P42759) Dehydrin ERD10 (Low-temperature-induced protein LTI45)| Length = 260 Score = 37.0 bits (84), Expect = 0.025 Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 2/27 (7%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYH--KTGEEDK 335 +EKKG + KI +KLPGYH TGEE+K Sbjct: 228 EEKKGFMDKIKEKLPGYHAKTTGEEEK 254 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -2 Query: 415 DAKEKKGLLGKIMDKLPGYHKTGEEDK 335 + +EKKG + KI +KLPG+ K E+ + Sbjct: 183 EEEEKKGFMDKIKEKLPGHSKKPEDSQ 209
>COR47_ARATH (P31168) Dehydrin COR47 (Cold-induced COR47 protein)| Length = 265 Score = 35.8 bits (81), Expect = 0.055 Identities = 17/25 (68%), Positives = 21/25 (84%), Gaps = 1/25 (4%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYH-KTGEED 338 +EKKG+L KI +KLPGYH KT EE+ Sbjct: 232 EEKKGILEKIKEKLPGYHAKTTEEE 256 Score = 35.0 bits (79), Expect = 0.093 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHKTGEEDKAAAPS 320 +EKKGL+ KI +KLPG+H ED A S Sbjct: 181 EEKKGLVEKIKEKLPGHHDEKAEDSPAVTS 210 Score = 33.5 bits (75), Expect = 0.27 Identities = 15/25 (60%), Positives = 21/25 (84%), Gaps = 1/25 (4%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYH-KTGEED 338 ++KKGL+ KI +KLPG+H KT E+D Sbjct: 134 EDKKGLVEKIKEKLPGHHDKTAEDD 158
>ERD14_ARATH (P42763) Dehydrin ERD14| Length = 185 Score = 34.3 bits (77), Expect = 0.16 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH--KTGEEDK 335 EKKG+L KI +KLPGYH T EE+K Sbjct: 156 EKKGILEKIKEKLPGYHPKTTVEEEK 181 Score = 32.7 bits (73), Expect = 0.46 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHKTGEEDKAAAPSGEHKPRA*SPPCPETH 272 +EKKG + K+ +KLPG HK E+ A A + P PP E H Sbjct: 113 EEKKGFMEKLKEKLPG-HKKPEDGSAVAAA----PVVVPPPVEEAH 153
>DHLEA_ARATH (Q96261) Probable dehydrin LEA| Length = 185 Score = 32.0 bits (71), Expect = 0.79 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKKG+L KI DKLPG+H Sbjct: 164 EKKGILEKIKDKLPGHH 180
>TAS14_LYCES (P22240) Abscisic acid and environmental stress-inducible protein| TAS14 (Dehydrin TAS14) Length = 130 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 6/31 (19%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHK------TGEEDK 335 + KKGL KIM+K+PG H+ TGEE K Sbjct: 86 RRKKGLKEKIMEKMPGQHEGEYGQTTGEEKK 116 Score = 30.0 bits (66), Expect = 3.0 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYH 356 +EKKG++ KI DK+PG H Sbjct: 113 EEKKGMMDKIKDKIPGMH 130
>ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44| Length = 258 Score = 31.6 bits (70), Expect = 1.0 Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%) Frame = -2 Query: 403 KKGLLGKIMDKLPGYH-KTGEEDK 335 KKG+L KI +K+PGYH KT E++ Sbjct: 182 KKGILEKIKEKIPGYHPKTSTEEE 205 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 415 DAKEKKGLLGKIMDKLPGYHKTGEEDKAAAP 323 + ++KKG + KI +KLPG K EE+ A P Sbjct: 134 EPEKKKGFMEKIKEKLPGGGKKVEEETVAPP 164
>CRK_XENLA (P87378) SH2/SH3 adaptor crk (Adapter molecule crk) (CRK2)| Length = 296 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +3 Query: 78 NKLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHGPDLQR 191 N+ HP P GP PY Q P PN +GP R Sbjct: 197 NQENSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIFAR 234
>CRK_CHICK (Q04929) Proto-oncogene C-crk (P38)| Length = 305 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +3 Query: 78 NKLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHGP 179 N+ HP P GP PY Q P PN +GP Sbjct: 205 NQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGP 238
>DHR21_ORYSA (P12253) Water stress-inducible protein Rab21| Length = 172 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -2 Query: 415 DAKEKKGLLGKIMDKLPGYH 356 D EKKG++ KI +KLPG H Sbjct: 153 DTGEKKGIMDKIKEKLPGQH 172
>DHLE_RAPSA (P21298) Late embryogenesis abundant protein (Protein LEA)| Length = 184 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKKG+L KI +KLPG+H Sbjct: 164 EKKGILEKIKEKLPGHH 180
>DHN3_HORVU (P12948) Dehydrin DHN3 (B17)| Length = 161 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHKTGEEDKAAAPSGEH 311 + KKGL KI +KLPG H G++ + G+H Sbjct: 74 RRKKGLKDKIKEKLPGGH--GDQQQTGGTYGQH 104 Score = 28.9 bits (63), Expect = 6.7 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKKG++ KI +KLPG H Sbjct: 145 EKKGIMDKIKEKLPGQH 161
>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)| Length = 225 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -2 Query: 415 DAKEKKGLLGKIMDKLPGYH 356 D EKKG++ KI +KLPG H Sbjct: 206 DTGEKKGIMDKIKEKLPGQH 225
>ECP40_DAUCA (Q07322) Embryogenic cell protein 40 (ECP40)| Length = 306 Score = 30.0 bits (66), Expect = 3.0 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKK +L KI DKLPG+H Sbjct: 285 EKKSMLDKIKDKLPGHH 301
>CRK_RAT (Q63768) Proto-oncogene C-crk (P38) (Adapter molecule crk)| Length = 304 Score = 30.0 bits (66), Expect = 3.0 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +3 Query: 78 NKLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHGP 179 N+ HP P GP PY Q P PN +GP Sbjct: 204 NQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGP 237
>CRK_MOUSE (Q64010) Proto-oncogene C-crk (P38) (Adapter molecule crk)| Length = 304 Score = 30.0 bits (66), Expect = 3.0 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +3 Query: 78 NKLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHGP 179 N+ HP P GP PY Q P PN +GP Sbjct: 204 NQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGP 237
>XERO2_ARATH (P42758) Dehydrin Xero 2 (Low-temperature-induced protein LTI30)| Length = 193 Score = 29.6 bits (65), Expect = 3.9 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 +KKG+ KIM+KLPG+H Sbjct: 11 QKKGITEKIMEKLPGHH 27 Score = 28.9 bits (63), Expect = 6.7 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKKG+ K+M++LPG+H Sbjct: 65 EKKGMTEKVMEQLPGHH 81 Score = 28.9 bits (63), Expect = 6.7 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKKG+ K+M++LPG+H Sbjct: 38 EKKGMTEKVMEQLPGHH 54
>CS66_WHEAT (P46526) Cold shock protein CS66| Length = 469 Score = 29.6 bits (65), Expect = 3.9 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 412 AKEKKGLLGKIMDKLPGYHKTGEEDKAA 329 A EKKG++ KI +KLPG H +E A Sbjct: 8 AGEKKGIMEKIKEKLPGGHGDHKETAGA 35 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKK L+ KI DKLPG H Sbjct: 453 EKKSLMDKIKDKLPGQH 469 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYHKTGEEDKAAAPSGE 314 EKKGL+ I DKLPG H G+ + G+ Sbjct: 235 EKKGLMENIKDKLPGGH--GDHQQTGGTYGQ 263
>SODC_DEIRA (Q9RU48) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 182 Score = 29.6 bits (65), Expect = 3.9 Identities = 20/66 (30%), Positives = 29/66 (43%) Frame = +3 Query: 144 HKHPSPNGLHGPDLQRRSIPPS*HGLKLKANTTHANNLMEVR**VSGHGGDQALGLCSPE 323 H H +PN GPD Q ++IP G +H ++ R GHGGD + + Sbjct: 69 HIHENPNCNPGPDAQGQTIPFGAAGGHFDPGASHNHDGPHAR-NDQGHGGDLPMITVGED 127 Query: 324 GAAALS 341 G L+ Sbjct: 128 GKGRLN 133
>CS120_WHEAT (P46525) Cold-shock protein CS120| Length = 391 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -2 Query: 412 AKEKKGLLGKIMDKLPGYHKTGEEDKAAAPSG 317 A EKKG++ KI +KLPG H G+ + A G Sbjct: 8 AGEKKGIMEKIKEKLPGGH--GDHKETAGTHG 37 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKK L+ KI DKLPG H Sbjct: 375 EKKSLMDKIKDKLPGQH 391 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 412 AKEKKGLLGKIMDKLPGYHKTGEE 341 A EKKG++ I DKLPG H+ ++ Sbjct: 71 AGEKKGVMENIKDKLPGGHQDHQQ 94
>DH16B_ORYSA (P22911) Dehydrin Rab16B| Length = 164 Score = 29.3 bits (64), Expect = 5.1 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -2 Query: 415 DAKEKKGLLGKIMDKLPGYH 356 +A EKKG + KI +KLPG H Sbjct: 145 NAGEKKGFMDKIKEKLPGQH 164
>COBL6_ARATH (O04500) COBRA-like protein 6 precursor| Length = 454 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -2 Query: 142 SVWVYGLQFGPESGPGCCLSLFAYYYGHFV 53 +V VY QF P CC+SL A+YY + V Sbjct: 217 AVCVYS-QFRSSPSPKCCVSLSAFYYQNIV 245
>SMOC2_HUMAN (Q9H3U7) SPARC-related modular calcium-binding protein 2 precursor| (Secreted modular calcium-binding protein 2) (SMOC-2) (Smooth muscle-associated protein 2) (SMAP-2) Length = 446 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -2 Query: 388 GKIMDKLPGYHKTGEEDKAAAPSGEHKPR 302 G + +KLP TG+ D AAAP+ E +P+ Sbjct: 155 GSVNEKLPQREGTGKTDDAAAPALETQPQ 183
>DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein)| Length = 168 Score = 28.9 bits (63), Expect = 6.7 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKKG++ KI +KLPG H Sbjct: 152 EKKGIMDKIKEKLPGQH 168 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHKTGEEDKAAAPSG 317 + KKG+ KI +KLPG HK ++ A A +G Sbjct: 92 RRKKGIKEKIKEKLPGGHK--DDQHATATTG 120
>TRUB_LEGPA (Q5X1C5) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 303 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +1 Query: 52 TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165 T NN+ L+ +QD+ L Q A + ++ +I+HLT Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAIQHLT 242
>DHR15_WHEAT (Q00742) Dehydrin Rab15| Length = 149 Score = 28.9 bits (63), Expect = 6.7 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKKG++ KI +KLPG H Sbjct: 133 EKKGIMDKIKEKLPGQH 149 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHKTGEEDKA 332 + KKG+ KI +KLPG HK ++ A Sbjct: 72 RRKKGMKEKIKEKLPGGHKDNQQHMA 97
>ALU4_HUMAN (P39191) Alu subfamily SB2 sequence contamination warning entry| Length = 603 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = -2 Query: 337 KAAAPSGEHKPRA*SPPCPETHHRTSIKLLACVVFALSLSPCQDG 203 K P H P + SP T R +L+ C+ +SPC G Sbjct: 430 KLRFPGSRHSPASASPVAGTTGARHRARLIFCIFSRDGVSPCXPG 474
>DHR25_ORYSA (P30287) Dehydrin Rab25 (Drought-resistant protein 1) (rDRP1)| Length = 228 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHKTGEEDKA 332 ++KK + KI +KLPG HK E+ +A Sbjct: 163 RKKKSIKEKIKEKLPGSHKQEEQKQA 188
>ATM_NEUCR (Q7RZT9) Serine/threonine-protein kinase tel-1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase tel-1) (Telomere length regulation protein 1) (ATM homolog) Length = 2953 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +1 Query: 85 LNNIQDLTLDQTEARIPKLNTSIRHLTGFTDRTFKDDQSLHLDTDLNLK 231 ++N+ + LDQT+ KL+ +++ T +D+Q L ++T L L+ Sbjct: 1798 VHNVLEYELDQTQGMKQKLSEALKEWLTSTSPAARDNQKLLINTILYLR 1846
>ISPZ_HAEDU (Q7VKZ1) Probable intracellular septation protein| Length = 183 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -1 Query: 170 KPVR*RMLVFSLGIRASVWSRVR-SWMLFKFICLLLRAL 57 KPV +L L + VW+R+ W +F IC+L+ + Sbjct: 98 KPVVKMLLAKELSLPTQVWNRLNLGWAIFFIICMLINII 136
>DHR18_ARATH (P30185) Dehydrin Rab18| Length = 186 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYHKTGEEDKAAAPSG 317 + KKG+ KI +KLPG+H + +A G Sbjct: 125 RRKKGITQKIKEKLPGHHDQSGQAQAMGGMG 155
>TRUB_LEGPL (Q5WT38) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 303 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 52 TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165 T NN+ L+ +QD+ L Q A + ++ +++HLT Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAVQHLT 242
>TRUB_LEGPH (Q5ZRV6) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 303 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 52 TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165 T NN+ L+ +QD+ L Q A + ++ +++HLT Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAVQHLT 242
>DH16D_ORYSA (P22913) Dehydrin Rab16D| Length = 151 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 406 EKKGLLGKIMDKLPGYH 356 EKKG++ KI +KLPG H Sbjct: 135 EKKGIVDKIKEKLPGQH 151
>DHA_CRAPL (P22238) Desiccation-related protein clone PCC27-04| Length = 117 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -2 Query: 409 KEKKGLLGKIMDKLPGYH 356 +EKKG++ KI +KLPG H Sbjct: 100 EEKKGVMEKIKEKLPGQH 117 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,807,774 Number of Sequences: 219361 Number of extensions: 1263540 Number of successful extensions: 3265 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3263 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
