Clone Name | rbart21e12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chr... | 40 | 1.0 | 2 | gb|AC159872.12| Medicago truncatula clone mth2-29k12, complete s... | 38 | 4.1 | 3 | gb|AC013355.7|AC013355 Homo sapiens chromosome 15 clone RP11-178... | 38 | 4.1 | 4 | dbj|AP005208.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... | 38 | 4.1 |
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>emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chromosome 13 Contains the gene for a novel protein similar to transforming growth factor beta-stimulated protein (TSC-22), SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 ) pseudogene and a CpG island, complete sequence Length = 140499 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 taaaacaagatacataatct 91 |||||||||||||||||||| Sbjct: 59887 taaaacaagatacataatct 59906
>gb|AC159872.12| Medicago truncatula clone mth2-29k12, complete sequence Length = 117971 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 aacagagggcactaaaaca 78 ||||||||||||||||||| Sbjct: 3494 aacagagggcactaaaaca 3512
>gb|AC013355.7|AC013355 Homo sapiens chromosome 15 clone RP11-178D12 map 15q21.3, complete sequence Length = 151133 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 ctaaaacaagatacataatctag 93 ||||||||||||||| ||||||| Sbjct: 68668 ctaaaacaagatacaaaatctag 68646
>dbj|AP005208.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-138C24, complete sequence Length = 171454 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 ctaaaacaagatacataat 89 ||||||||||||||||||| Sbjct: 104841 ctaaaacaagatacataat 104859 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 399,309 Number of Sequences: 3902068 Number of extensions: 399309 Number of successful extensions: 26308 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26302 Number of HSP's gapped (non-prelim): 6 length of query: 94 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 73 effective length of database: 17,151,101,840 effective search space: 1252030434320 effective search space used: 1252030434320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)