ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPA4L_HUMAN (Q8TC36) Sperm-associated antigen 4-like protein (Te... 30 3.3
2URE2_KLUMA (Q8NJR4) Protein URE2 28 9.7

>SPA4L_HUMAN (Q8TC36) Sperm-associated antigen 4-like protein (Testis and|
           spermatogenesis-related gene 4 protein)
          Length = 379

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -3

Query: 266 D*AFQQSQCMIDHISWFNDFRHAARSSARVHPVLHRSCRTIGIRSHMF----LLVACKFG 99
           D A   +QCM+  +SWF  F  + R+ A+   VL  +CR   +   +     +L+ C FG
Sbjct: 57  DQALGLTQCMLGCVSWFTCFACSLRTQAQ--QVLFNTCRCKLLCQKLMEKTGILLLCAFG 114



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>URE2_KLUMA (Q8NJR4) Protein URE2|
          Length = 404

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 366 HHHQQIRNQPNRSGSKGETTIRASMLHHGRNS 271
           HHHQQ +  PN +   G  T +  ML  G NS
Sbjct: 117 HHHQQRQQHPNNNVQAG--TSQQQMLFQGANS 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,613,263
Number of Sequences: 219361
Number of extensions: 1286544
Number of successful extensions: 2584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2582
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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