ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart21e10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479314.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1320 Score = 212 bits (107), Expect = 7e-52 Identities = 245/291 (84%) Strand = Plus / Minus Query: 168 gcgcagccatgttgctctccacgaaggccttcatctcctggaaaaccttgccggcgtcag 227 |||| ||| ||||||||| ||||| |||| || ||||| || |||||||||||||| | Sbjct: 1147 gcgccgccctgttgctctggacgaacaccttgatgtcctgcaagaccttgccggcgtcgg 1088 Query: 228 cgactgcggggaagccgtaaaacccgtggaagccgtctgggtactccgccaccttgacct 287 ||| | ||||||||||| || || |||||| |||| ||| |||||||||||| ||| Sbjct: 1087 cgagctccgggaagccgtagaagccatggaaggcgtcggggaactccgccacctccaccg 1028 Query: 288 tcacccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct: 1027 ccttccccttccgccgcagcacgtcgacgtaccgccgctgccagtcctgcagcgggtcga 968 Query: 348 acccgccgaccacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcgg 407 |||| |||| ||| | | || ||||||||| |||| | |||||||||||||||||||| Sbjct: 967 accctccgatcaccaccatcgccggcgggaacgcctccgccagctcggcgttctcgtcgg 908 Query: 408 tcacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaaggcct 458 | ||||||||||||||||| |||||| ||||||||| |||||||| |||| Sbjct: 907 tgacgtgcgccgccgggtggtcgcggtcggcgcccaccggcaggaacgcct 857
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 212 bits (107), Expect = 7e-52 Identities = 245/291 (84%) Strand = Plus / Plus Query: 168 gcgcagccatgttgctctccacgaaggccttcatctcctggaaaaccttgccggcgtcag 227 |||| ||| ||||||||| ||||| |||| || ||||| || |||||||||||||| | Sbjct: 26742786 gcgccgccctgttgctctggacgaacaccttgatgtcctgcaagaccttgccggcgtcgg 26742845 Query: 228 cgactgcggggaagccgtaaaacccgtggaagccgtctgggtactccgccaccttgacct 287 ||| | ||||||||||| || || |||||| |||| ||| |||||||||||| ||| Sbjct: 26742846 cgagctccgggaagccgtagaagccatggaaggcgtcggggaactccgccacctccaccg 26742905 Query: 288 tcacccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct: 26742906 ccttccccttccgccgcagcacgtcgacgtaccgccgctgccagtcctgcagcgggtcga 26742965 Query: 348 acccgccgaccacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcgg 407 |||| |||| ||| | | || ||||||||| |||| | |||||||||||||||||||| Sbjct: 26742966 accctccgatcaccaccatcgccggcgggaacgcctccgccagctcggcgttctcgtcgg 26743025 Query: 408 tcacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaaggcct 458 | ||||||||||||||||| |||||| ||||||||| |||||||| |||| Sbjct: 26743026 tgacgtgcgccgccgggtggtcgcggtcggcgcccaccggcaggaacgcct 26743076 Score = 123 bits (62), Expect = 5e-25 Identities = 134/158 (84%) Strand = Plus / Plus Query: 296 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccg 355 ||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||| Sbjct: 26737514 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccctccg 26737573 Query: 356 accacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcggtcacgtgc 415 ||||| | | || ||||||||| ||| | |||||||||||||||| |||| |||||| Sbjct: 26737574 accaccaccatcgccggcgggaactcctccgccagctcggcgttctcgccggtgacgtgc 26737633 Query: 416 gccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 ||||||||||| |||||| ||||||| | |||||||| Sbjct: 26737634 gccgccgggtggtcgcggtcggcgccctccggcaggaa 26737671 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 292 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 351 ||||||||||||||||| | ||||||||||||| | |||||| ||||||||||||| ||| Sbjct: 26740019 ccccttccgccgcagcatggcggcgtaccgccggtcccagtcctgcagcgggtcgagccc 26740078 Query: 352 gccgac 357 ||||| Sbjct: 26740079 cccgac 26740084 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 409 cacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 |||||||||||||||||| || || ||||||||| | |||||||| Sbjct: 26727291 cacgtgcgccgccgggtggtcccgtgtggcgccctccggcaggaa 26727247 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 409 cacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 |||| ||||||||| ||| || |||||||||||| | |||||||| Sbjct: 26730127 cacgcgcgccgccgcgtggtcccgggtggcgccctccggcaggaa 26730171
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_C06 Length = 143168 Score = 212 bits (107), Expect = 7e-52 Identities = 245/291 (84%) Strand = Plus / Plus Query: 168 gcgcagccatgttgctctccacgaaggccttcatctcctggaaaaccttgccggcgtcag 227 |||| ||| ||||||||| ||||| |||| || ||||| || |||||||||||||| | Sbjct: 89643 gcgccgccctgttgctctggacgaacaccttgatgtcctgcaagaccttgccggcgtcgg 89702 Query: 228 cgactgcggggaagccgtaaaacccgtggaagccgtctgggtactccgccaccttgacct 287 ||| | ||||||||||| || || |||||| |||| ||| |||||||||||| ||| Sbjct: 89703 cgagctccgggaagccgtagaagccatggaaggcgtcggggaactccgccacctccaccg 89762 Query: 288 tcacccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct: 89763 ccttccccttccgccgcagcacgtcgacgtaccgccgctgccagtcctgcagcgggtcga 89822 Query: 348 acccgccgaccacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcgg 407 |||| |||| ||| | | || ||||||||| |||| | |||||||||||||||||||| Sbjct: 89823 accctccgatcaccaccatcgccggcgggaacgcctccgccagctcggcgttctcgtcgg 89882 Query: 408 tcacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaaggcct 458 | ||||||||||||||||| |||||| ||||||||| |||||||| |||| Sbjct: 89883 tgacgtgcgccgccgggtggtcgcggtcggcgcccaccggcaggaacgcct 89933 Score = 123 bits (62), Expect = 5e-25 Identities = 134/158 (84%) Strand = Plus / Plus Query: 296 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccg 355 ||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||| Sbjct: 84371 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccctccg 84430 Query: 356 accacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcggtcacgtgc 415 ||||| | | || ||||||||| ||| | |||||||||||||||| |||| |||||| Sbjct: 84431 accaccaccatcgccggcgggaactcctccgccagctcggcgttctcgccggtgacgtgc 84490 Query: 416 gccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 ||||||||||| |||||| ||||||| | |||||||| Sbjct: 84491 gccgccgggtggtcgcggtcggcgccctccggcaggaa 84528 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 292 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 351 ||||||||||||||||| | ||||||||||||| | |||||| ||||||||||||| ||| Sbjct: 86876 ccccttccgccgcagcatggcggcgtaccgccggtcccagtcctgcagcgggtcgagccc 86935 Query: 352 gccgac 357 ||||| Sbjct: 86936 cccgac 86941 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 409 cacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 |||||||||||||||||| || || ||||||||| | |||||||| Sbjct: 74148 cacgtgcgccgccgggtggtcccgtgtggcgccctccggcaggaa 74104 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 409 cacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 |||| ||||||||| ||| || |||||||||||| | |||||||| Sbjct: 76984 cacgcgcgccgccgcgtggtcccgggtggcgccctccggcaggaa 77028
>dbj|AK109637.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E04, full insert sequence Length = 1320 Score = 212 bits (107), Expect = 7e-52 Identities = 245/291 (84%) Strand = Plus / Minus Query: 168 gcgcagccatgttgctctccacgaaggccttcatctcctggaaaaccttgccggcgtcag 227 |||| ||| ||||||||| ||||| |||| || ||||| || |||||||||||||| | Sbjct: 1147 gcgccgccctgttgctctggacgaacaccttgatgtcctgcaagaccttgccggcgtcgg 1088 Query: 228 cgactgcggggaagccgtaaaacccgtggaagccgtctgggtactccgccaccttgacct 287 ||| | ||||||||||| || || |||||| |||| ||| |||||||||||| ||| Sbjct: 1087 cgagctccgggaagccgtagaagccatggaaggcgtcggggaactccgccacctccaccg 1028 Query: 288 tcacccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct: 1027 ccttccccttccgccgcagcacgtcgacgtaccgccgctgccagtcctgcagcgggtcga 968 Query: 348 acccgccgaccacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcgg 407 |||| |||| ||| | | || ||||||||| |||| | |||||||||||||||||||| Sbjct: 967 accctccgatcaccaccatcgccggcgggaacgcctccgccagctcggcgttctcgtcgg 908 Query: 408 tcacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaaggcct 458 | ||||||||||||||||| |||||| ||||||||| |||||||| |||| Sbjct: 907 tgacgtgcgccgccgggtggtcgcggtcggcgcccaccggcaggaacgcct 857
>ref|NM_188843.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1165 Score = 123 bits (62), Expect = 5e-25 Identities = 134/158 (84%) Strand = Plus / Minus Query: 296 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccg 355 ||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||| Sbjct: 941 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccctccg 882 Query: 356 accacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcggtcacgtgc 415 ||||| | | || ||||||||| ||| | |||||||||||||||| |||| |||||| Sbjct: 881 accaccaccatcgccggcgggaactcctccgccagctcggcgttctcgccggtgacgtgc 822 Query: 416 gccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 ||||||||||| |||||| ||||||| | |||||||| Sbjct: 821 gccgccgggtggtcgcggtcggcgccctccggcaggaa 784
>dbj|AK109437.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B02, full insert sequence Length = 1171 Score = 123 bits (62), Expect = 5e-25 Identities = 134/158 (84%) Strand = Plus / Minus Query: 296 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccg 355 ||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||| Sbjct: 947 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccctccg 888 Query: 356 accacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcggtcacgtgc 415 ||||| | | || ||||||||| ||| | |||||||||||||||| |||| |||||| Sbjct: 887 accaccaccatcgccggcgggaactcctccgccagctcggcgttctcgccggtgacgtgc 828 Query: 416 gccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 ||||||||||| |||||| ||||||| | |||||||| Sbjct: 827 gccgccgggtggtcgcggtcggcgccctccggcaggaa 790
>dbj|AK111373.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A08, full insert sequence Length = 1139 Score = 123 bits (62), Expect = 5e-25 Identities = 134/158 (84%) Strand = Plus / Plus Query: 296 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccg 355 ||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||| Sbjct: 119 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccctccg 178 Query: 356 accacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcggtcacgtgc 415 ||||| | | || ||||||||| ||| | |||||||||||||||| |||| |||||| Sbjct: 179 accaccaccatcgccggcgggaactcctccgccagctcggcgttctcgccggtgacgtgc 238 Query: 416 gccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 ||||||||||| |||||| ||||||| | |||||||| Sbjct: 239 gccgccgggtggtcgcggtcggcgccctccggcaggaa 276
>dbj|AK061012.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B04, full insert sequence Length = 1165 Score = 123 bits (62), Expect = 5e-25 Identities = 134/158 (84%) Strand = Plus / Minus Query: 296 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccg 355 ||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||| Sbjct: 941 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccctccg 882 Query: 356 accacaaggagcgtcggcgggaaggccttggtcagctcggcgttctcgtcggtcacgtgc 415 ||||| | | || ||||||||| ||| | |||||||||||||||| |||| |||||| Sbjct: 881 accaccaccatcgccggcgggaactcctccgccagctcggcgttctcgccggtgacgtgc 822 Query: 416 gccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 ||||||||||| |||||| ||||||| | |||||||| Sbjct: 821 gccgccgggtggtcgcggtcggcgccctccggcaggaa 784
>ref|NM_188844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1041 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 292 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 351 ||||||||||||||||| | ||||||||||||| | |||||| ||||||||||||| ||| Sbjct: 894 ccccttccgccgcagcatggcggcgtaccgccggtcccagtcctgcagcgggtcgagccc 835 Query: 352 gccgac 357 ||||| Sbjct: 834 cccgac 829
>gb|AY107778.1| Zea mays PCO145234 mRNA sequence Length = 691 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 392 tcggcgttctcgtcggtcacgtgcgccgccgggtgatcgcgggtggcgcccacgggcagg 451 |||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||||| Sbjct: 307 tcggcgttgtcgtcggtgacgtgcgcggccgggtggtcgcgggtggcgccgtcgggcagg 248 Query: 452 aa 453 || Sbjct: 247 aa 246 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 236 gggaagccgtaaaacccgtggaagccgtctgggtactccgccaccttgaccttcaccccc 295 ||||||||||| || |||||||| | |||||||||| |||||| |||| | |||| Sbjct: 463 gggaagccgtagaagccgtggaacatgcctgggtactcggccaccagcacctccttcccc 404 Query: 296 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccg 355 ||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||| Sbjct: 403 ttccggcgcagcacgtcggcgtagcgtcgctgccagtccatgagcgggtcgaagccgccg 344 Query: 356 a 356 | Sbjct: 343 a 343
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 292 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 ||||||||||||||||| | ||||||||| ||| | |||||||||||||||||||| Sbjct: 11430129 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 11430074
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 292 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 ||||||||||||||||| | ||||||||| ||| | |||||||||||||||||||| Sbjct: 117838 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 117783
>dbj|AK106075.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H11, full insert sequence Length = 1312 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 292 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 ||||||||||||||||| | ||||||||| ||| | |||||||||||||||||||| Sbjct: 994 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 939
>dbj|AK099262.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004G05, full insert sequence Length = 1371 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 292 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 ||||||||||||||||| | ||||||||| ||| | |||||||||||||||||||| Sbjct: 1006 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 951
>dbj|AK070763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066M03, full insert sequence Length = 1378 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 292 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 347 ||||||||||||||||| | ||||||||| ||| | |||||||||||||||||||| Sbjct: 1031 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 976
>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24, complete sequence Length = 136104 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 301 ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccga 356 |||||||| ||||||||||||| ||||||||| || ||||||||| | ||||||| Sbjct: 114644 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcgtagccgccga 114589
>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20, complete sequence Length = 130827 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 301 ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccga 356 |||||||| ||||||||||||| ||||||||| || ||||||||| | ||||||| Sbjct: 7015 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcgtagccgccga 6960
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 301 ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccga 356 |||||||| ||||||||||||| ||||||||| || ||||||||| | ||||||| Sbjct: 83324 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcgtagccgccga 83269
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 301 ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccga 356 |||||||| ||||||||||||| ||||||||| || ||||||||| | ||||||| Sbjct: 7356154 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcgtagccgccga 7356209
>dbj|AK065416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022N12, full insert sequence Length = 1377 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 301 ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccga 356 |||||||| ||||||||||||| ||||||||| || ||||||||| | ||||||| Sbjct: 980 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcgtagccgccga 925
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 301 ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaacccgccga 356 |||||||| ||||||||||||| ||||||||| || ||||||||| | ||||||| Sbjct: 7426240 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcgtagccgccga 7426295
>ref|XM_479313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1044 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 409 cacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 |||||||||||||||||| || || ||||||||| | |||||||| Sbjct: 783 cacgtgcgccgccgggtggtcccgtgtggcgccctccggcaggaa 739
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 409 cacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 |||||||||||||||||| || || ||||||||| | |||||||| Sbjct: 144895 cacgtgcgccgccgggtggtcccgtgtggcgccctccggcaggaa 144851
>ref|NM_188838.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1684 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 409 cacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 |||| ||||||||| ||| || |||||||||||| | |||||||| Sbjct: 857 cacgcgcgccgccgcgtggtcccgggtggcgccctccggcaggaa 813
>ref|XM_386503.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06327.1) partial mRNA Length = 471 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cttggatcacggcatcttcct 145 ||||||||||||||||||||| Sbjct: 313 cttggatcacggcatcttcct 293
>gb|AC012229.8| Homo sapiens chromosome 15, clone RP11-182L7, complete sequence Length = 119723 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 cactacacaaaacacaatgat 89 ||||||||||||||||||||| Sbjct: 56618 cactacacaaaacacaatgat 56638
>gb|AC156541.7| Mus musculus chromosome 1, clone RP23-478I8, complete sequence Length = 173297 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 cacaatgatcaaatcaacaaa 101 ||||||||||||||||||||| Sbjct: 172450 cacaatgatcaaatcaacaaa 172470
>gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complete sequence Length = 161935 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 aaatcaacaaatcttattttc 111 ||||||||||||||||||||| Sbjct: 118633 aaatcaacaaatcttattttc 118613
>dbj|AK109004.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H02, full insert sequence Length = 1684 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 409 cacgtgcgccgccgggtgatcgcgggtggcgcccacgggcaggaa 453 |||| ||||||||| ||| || |||||||||||| | |||||||| Sbjct: 857 cacgcgcgccgccgcgtggtcccgggtggcgccctccggcaggaa 813
>gb|AC101783.12| Mus musculus chromosome 1, clone RP24-136B19, complete sequence Length = 169909 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 cacaatgatcaaatcaacaaa 101 ||||||||||||||||||||| Sbjct: 46522 cacaatgatcaaatcaacaaa 46502
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 tcggcgtaccgccgctgccag 331 ||||||||||||||||||||| Sbjct: 4447404 tcggcgtaccgccgctgccag 4447384
>gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, complete sequence Length = 192276 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 65 atcacactacacaaaacacaatgatcaa 92 ||||| ||||||||||||||| |||||| Sbjct: 126209 atcactctacacaaaacacaaggatcaa 126182
>gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, complete sequence Length = 198815 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 65 atcacactacacaaaacacaatgatcaa 92 ||||| ||||||||||||||| |||||| Sbjct: 138930 atcactctacacaaaacacaaggatcaa 138957
>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence Length = 283075 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aatcaacaaatcttattttc 111 |||||||||||||||||||| Sbjct: 261706 aatcaacaaatcttattttc 261725
>emb|BX323012.5| Zebrafish DNA sequence from clone DKEYP-46F3, complete sequence Length = 175238 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cgagcttaaacaaacatatt 20 |||||||||||||||||||| Sbjct: 113841 cgagcttaaacaaacatatt 113860
>gb|AE011964.1| Xanthomonas axonopodis pv. citri str. 306, section 342 of 469 of the complete genome Length = 10942 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ccttgccggcgtcagcgact 232 |||||||||||||||||||| Sbjct: 8316 ccttgccggcgtcagcgact 8297
>gb|AC010614.8| Homo sapiens chromosome 19 clone CTD-2518G19, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 ccttgaccttcacccccttc 298 |||||||||||||||||||| Sbjct: 11283 ccttgaccttcacccccttc 11302
>gb|AF188480.1|AF188480 Macropodid herpesvirus 1 ICP0 (RL-2), ICP34.5 (RL-1), thymidylate synthase, and ICP4 (RS-1) genes, complete cds Length = 13610 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 gcgccgccgggtgatcgcgg 433 |||||||||||||||||||| Sbjct: 11279 gcgccgccgggtgatcgcgg 11260
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 gccttcatctcctggaaaaccttg 217 |||||||||||||||||| ||||| Sbjct: 1146722 gccttcatctcctggaaatccttg 1146699
>gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207864 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 attgtaatcagtgatcacac 71 |||||||||||||||||||| Sbjct: 20753 attgtaatcagtgatcacac 20734
>gb|AC155334.7| Mus musculus 6 BAC RP24-420O24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 153509 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 attgtaatcagtgatcacac 71 |||||||||||||||||||| Sbjct: 144360 attgtaatcagtgatcacac 144341
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ggccttggtcagctcggcgt 398 |||||||||||||||||||| Sbjct: 120395 ggccttggtcagctcggcgt 120376
>gb|AC102493.8| Mus musculus chromosome 8, clone RP24-546F2, complete sequence Length = 175883 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 aaaacacaatgatcaaatcaacaa 100 |||||||||||||||| ||||||| Sbjct: 43963 aaaacacaatgatcaactcaacaa 43986
>emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chromosome 2, complete sequence Length = 144844 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 aatcaacaaatcttattttc 111 |||||||||||||||||||| Sbjct: 10556 aatcaacaaatcttattttc 10537 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,244,690 Number of Sequences: 3902068 Number of extensions: 3244690 Number of successful extensions: 75996 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75532 Number of HSP's gapped (non-prelim): 452 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
