ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR536608.3| Human DNA sequence from clone CITF22-5B3 on chro... 42 1.4
2ref|XM_584056.2| PREDICTED: Bos taurus similar to transmembrane ... 40 5.3
3ref|XM_865823.1| PREDICTED: Bos taurus similar to transmembrane ... 40 5.3
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
5dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3

>emb|CR536608.3| Human DNA sequence from clone CITF22-5B3 on chromosome 22, complete
            sequence
          Length = 9827

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 337  cttcccgcctctgccacagcc 357
            |||||||||||||||||||||
Sbjct: 4113 cttcccgcctctgccacagcc 4093



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>ref|XM_584056.2| PREDICTED: Bos taurus similar to transmembrane protein 19,
           transcript variant 1 (LOC538974), mRNA
          Length = 1396

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 216 cgagcacgcgcccatcacggtcgcggct 243
           |||||| |||||||||||||| ||||||
Sbjct: 269 cgagcaggcgcccatcacggttgcggct 296



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>ref|XM_865823.1| PREDICTED: Bos taurus similar to transmembrane protein 19,
           transcript variant 3 (LOC538974), mRNA
          Length = 1762

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 216 cgagcacgcgcccatcacggtcgcggct 243
           |||||| |||||||||||||| ||||||
Sbjct: 269 cgagcaggcgcccatcacggttgcggct 296



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     ctccaaacagcaaaagacca 153
               ||||||||||||||||||||
Sbjct: 5479239 ctccaaacagcaaaagacca 5479258



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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    ctccaaacagcaaaagacca 153
              ||||||||||||||||||||
Sbjct: 113220 ctccaaacagcaaaagacca 113239


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,371,908
Number of Sequences: 3902068
Number of extensions: 2371908
Number of successful extensions: 99778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99759
Number of HSP's gapped (non-prelim): 19
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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