ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YTRE_LEPBI (P20464) Hypothetical 22 kDa protein in trpE 5'region 29 5.3
2PSK4_ARATH (Q9SZG4) Putative phytosulfokines 4 precursor (AtPSK4... 28 9.1

>YTRE_LEPBI (P20464) Hypothetical 22 kDa protein in trpE 5'region|
          Length = 189

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +3

Query: 45  YINPSGNVTWNTKEKK*EMAE------HYTSRITHSTGNRLTKVIKRPNQP 179
           ++NPSG+ +WN   +K  + +      H+T  +    G      + +P QP
Sbjct: 135 HLNPSGDRSWNINSQKASICKGCPSSAHFTETLEFHYGKHHQTYVTKPQQP 185



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>PSK4_ARATH (Q9SZG4) Putative phytosulfokines 4 precursor (AtPSK4) [Contains:|
           Phytosulfokine-alpha-like (PSK-alpha-like)
           (Phytosulfokine-a-like); Phytosulfokine-beta (PSK-beta)
           (Phytosulfokine-b)]
          Length = 87

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 147 ICSLYCV*CVTCSALPFPTFFPSYST 70
           I  L C   +TCSA P P +F S++T
Sbjct: 10  IALLLCATMLTCSARPEPAYFASFTT 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,154,251
Number of Sequences: 219361
Number of extensions: 788546
Number of successful extensions: 2797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2733
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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