ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart21d10 |
|---|---|
| Clone Library Name | barley_pub |
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 60.8 bits (146), Expect = 2e-09 Identities = 34/54 (62%), Positives = 37/54 (68%) Frame = -1 Query: 475 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 314 LTLQ KSEAAEYQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 187 LTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 58.5 bits (140), Expect = 8e-09 Identities = 31/54 (57%), Positives = 36/54 (66%) Frame = -1 Query: 475 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 314 LTLQ S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 187 LTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 58.5 bits (140), Expect = 8e-09 Identities = 31/54 (57%), Positives = 36/54 (66%) Frame = -1 Query: 475 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 314 LTLQ S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS Sbjct: 187 LTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 58.2 bits (139), Expect = 1e-08 Identities = 32/54 (59%), Positives = 37/54 (68%) Frame = -1 Query: 475 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 314 LTLQ KSEAAEYQKLLA RLKEQR++RSES+AK+RS+LS Sbjct: 137 LTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRLS 190
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/28 (67%), Positives = 24/28 (85%) Frame = -1 Query: 409 EAAEYQKLLAQRLKEQRDRRSESMAKRR 326 EAAEY KLLA+RLKE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = -1 Query: 409 EAAEYQKLLAQRLKEQRDRRSESMAKRR 326 EAAEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = -1 Query: 409 EAAEYQKLLAQRLKEQRDRRSESMAKRR 326 EAAEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = -1 Query: 409 EAAEYQKLLAQRLKEQRDRRSESMAKRR 326 EAAEY KLLA+R+KE +++R E +AKRR Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/28 (60%), Positives = 24/28 (85%) Frame = -1 Query: 409 EAAEYQKLLAQRLKEQRDRRSESMAKRR 326 EA+EY KLLA+R+KE +++R E +AKRR Sbjct: 205 EASEYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/28 (60%), Positives = 24/28 (85%) Frame = -1 Query: 409 EAAEYQKLLAQRLKEQRDRRSESMAKRR 326 EAA+Y KLLA+R+KE +++R E +AKRR Sbjct: 205 EAADYAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 38.1 bits (87), Expect = 0.012 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = -1 Query: 409 EAAEYQKLLAQRLKEQRDRRSESMAKRR 326 EA+EY KLLA+R KE +++R E +AKRR Sbjct: 205 EASEYAKLLAKRSKEAKEKRQEQIAKRR 232
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 35.0 bits (79), Expect = 0.099 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = -1 Query: 412 SEAAEYQKLLAQRLKEQRDRRSESMAKRRS 323 S A+Y KLLAQR KE + RR E + +RRS Sbjct: 208 SAEADYAKLLAQRKKESKVRRQEEIKRRRS 237
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 33.1 bits (74), Expect = 0.37 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -1 Query: 400 EYQKLLAQRLKEQRDRRSESMAKRRS 323 +Y KLLAQR KE + RR E + +RRS Sbjct: 212 DYAKLLAQRKKESKVRRQEELKRRRS 237
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 32.3 bits (72), Expect = 0.64 Identities = 16/30 (53%), Positives = 21/30 (70%) Frame = -1 Query: 406 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 317 AAEY +LLAQRL E++ R+E +R S L Sbjct: 205 AAEYAQLLAQRLHERKAERAEIKKRRASSL 234
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 403 AEYQKLLAQRLKEQRDRRSE-SMAKRRSK 320 AEY KLLAQR+KE ++R+ E + RSK Sbjct: 208 AEYTKLLAQRMKEAKERKMERKRSNSRSK 236
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 30.8 bits (68), Expect = 1.9 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -1 Query: 406 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 317 AAEY +LLA+RL E++ ++E+ +R S L Sbjct: 205 AAEYAQLLAKRLAERKAEKAETRKRRASSL 234
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 406 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 317 AAEY +LLA+RL E++ ++E +R S L Sbjct: 205 AAEYAQLLAKRLTEKKAEKAEERKRRASSL 234
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -1 Query: 406 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 317 AAEY +LLA+R+ E++ ++E +R S L Sbjct: 206 AAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 406 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 317 AAEY +LLA+RL E++ ++E +R S L Sbjct: 205 AAEYAQLLAKRLSERKAEKAEIRKRRASSL 234
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 406 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 317 AAEY +LLA+RL E++ ++E +R S L Sbjct: 205 AAEYAQLLAKRLSERKAEKAEVRKRRASSL 234
>COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 272 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 238 ATFSFLGLVIDAVLREHGYFIVGSFVTGVAFLCLYLMQFT 119 A+ I V+ H Y + GSF+ ++F CL L+ FT Sbjct: 28 ASLCAFSCAIGGVMYMHAY-VNGSFILSISFFCLLLVMFT 66
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 29.3 bits (64), Expect = 5.4 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -1 Query: 406 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 317 +A+Y KLL QR KE + +R E+ +R + + Sbjct: 207 SADYAKLLVQRKKESKAKREEAKRRRSASI 236
>RS6_BRAFL (O01727) 40S ribosomal protein S6| Length = 244 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = -1 Query: 409 EAAEYQKLLAQRLKEQRDRRSESMAKRRS 323 E A Y KLLA+R KE+R E+ AKRRS Sbjct: 206 EEATYAKLLAKRKKEER----EAHAKRRS 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,664,455 Number of Sequences: 219361 Number of extensions: 830913 Number of successful extensions: 2381 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2381 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
