>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 307 KGARRCQEVFSEGETSLSSIQGRKESFSIQDAESLDAFLCSFNS 176
           K  + C+     GE +++S+   +ES+  +   S  AFL +FNS
Sbjct: 337 KAIKLCEPALVSGEPTITSLGQNQESYVYRSKSSCAAFLANFNS 380

>NOLX_RHISN (P55711) Nodulation protein nolX|
          Length = 596

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 456 AESTLLRLKKEAIAALPEKLRAAAMVPDMTP 364
           AESTL  L+K+ +A LP  +RAA    D TP
Sbjct: 66  AESTLEDLQKDPLALLPPHMRAAIESMDQTP 96

>NOLX_RHIFR (P33213) Nodulation protein nolX|
          Length = 471

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 456 AESTLLRLKKEAIAALPEKLRAAAMVPDMTP 364
           AESTL  L+K+ +A LP  +RAA    D TP
Sbjct: 66  AESTLEDLQKDPLALLPPHMRAAIESMDQTP 96

>FDHD_STRAW (Q82M23) Protein fdhD homolog|
          Length = 282

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = -2

Query: 465 RQTAESTL-----LRLKKEAIAALPEKLRAAAMVPDMTPFPANRYMATLTPPIEGYIEKV 301
           R TA  T+     +RL+ E +A+LP++LRAA  V D T      + A L    EG +  +
Sbjct: 127 RTTARWTIDDTPPVRLEPELLASLPDRLRAAQRVFDRT---GGLHAAALFTE-EGELVDI 182

Query: 300 RDAAKKYSVKEKL 262
           R+   +++  +KL
Sbjct: 183 REDVGRHNAVDKL 195

>RPOE_MYCTU (P66807) RNA polymerase sigma-E factor (Sigma-24)|
          Length = 216

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 429 KEAIAALPEKLRAAAMVPDMTPFPANRYMATLTPPI 322
           KEA+ ALPE+ R A    D+  FP       +  PI
Sbjct: 142 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPI 177

>RPOE_MYCBO (P66808) RNA polymerase sigma-E factor (Sigma-24)|
          Length = 216

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 429 KEAIAALPEKLRAAAMVPDMTPFPANRYMATLTPPI 322
           KEA+ ALPE+ R A    D+  FP       +  PI
Sbjct: 142 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPI 177

>YCRE_SCHPO (O74501) Hypothetical protein CC285.14 in chromosome III|
          Length = 1150

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 316 IY*KGARRCQEVFSEGETSLSSIQGRKESFSIQDAESLDA--FLCSFNS 176
           +Y +   +C+++FS     +S+I G+KE+ S    E  DA   L  FNS
Sbjct: 237 LYRESLEQCEDMFSTLSKIISAIDGKKENISKYLGEGSDAQPDLKDFNS 285

>DPO3A_STRP6 (Q5XBV1) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1036

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 279 SVKEKLR*VRFRGGKSLSPYKMPRV*TLSYAPLILGLSRFDDYFVLFWS*IIRF 118
           S K++L+ +   G K    +K P    L +  +I+    FDDYF++ W  ++RF
Sbjct: 239 SAKQELQELTEAGLKEKGLWKEPYQSRLLHELIIISDMGFDDYFLIVWD-LLRF 291

>POLG_HCVJK (Q68801) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3018

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +1

Query: 280 ILLGSVSHLFNISFNWRR-ERCHVAVCRERGHVRN--HSSSSQLLR*CS 417
           + +G + H FN + NW R ERC++   R+R  +    HS++ Q +  CS
Sbjct: 635 MFVGGLEHRFNAACNWTRGERCNLE-DRDRSEMYPLLHSTTEQAILPCS 682

>GCP_MYCGE (P47292) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)|
           (Glycoprotease)
          Length = 315

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/66 (31%), Positives = 37/66 (56%)
 Frame = -2

Query: 357 ANRYMATLTPPIEGYIEKVRDAAKKYSVKEKLR*VRFRGGKSLSPYKMPRV*TLSYAPLI 178
           A+ + AT+   I+ YI+ V++A KK++ K  L      GG S + Y   R+ TL+  P +
Sbjct: 237 ASNFQATI---IDHYIDHVKNAIKKFAPKMLL----VGGGVSANSYLSNRISTLN-LPFL 288

Query: 177 LGLSRF 160
           +  S++
Sbjct: 289 IADSKY 294

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 328  RRERCHVAVCRERGHVRNHSSSSQLLR*CSNGLLLEPQ 441
            R E C    C+  G V  H+  S   + C +GLL +PQ
Sbjct: 3155 RDELCKAVKCQYPGKVCGHTCYSPGTKVCCDGLLYDPQ 3192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,761,251
Number of Sequences: 219361
Number of extensions: 1182919
Number of successful extensions: 2756
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2756
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)