ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193764.1| Oryza sativa (japonica cultivar-group), predic... 254 2e-64
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 254 2e-64
3dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic D... 254 2e-64
4dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic D... 254 2e-64
5dbj|AK058499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 2e-64
6gb|AY104891.1| Zea mays PCO129002 mRNA sequence 151 2e-33
7gb|AC144516.5| Medicago truncatula clone mth2-28p22, complete se... 46 0.10
8gb|AC139747.15| Medicago truncatula clone mth2-9j10, complete se... 46 0.10
9gb|AC151824.12| Medicago truncatula clone mth2-45n18, complete s... 46 0.10
10gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete s... 46 0.10
11gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete seq... 46 0.10
12gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete s... 46 0.10
13gb|AC157502.2| Medicago truncatula chromosome 7 BAC clone mte1-5... 46 0.10
14gb|AC157488.1| Medicago truncatula chromosome 2 BAC clone mte1-3... 46 0.10
15gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete se... 44 0.40
16gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete se... 44 0.40
17gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete s... 44 0.40
18emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4,... 44 0.40
19dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
21gb|AC073271.4| Homo sapiens BAC clone RP11-541O14 from 2, comple... 44 0.40
22dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
23gb|AF163150.1|AF163150 Glycine max acetyl-CoA carboxylase (accC-... 44 0.40
24gb|AC154354.2| Mus musculus BAC clone RP23-203C5 from chromosome... 42 1.6
25gb|AC183502.5| Medicago truncatula clone mth2-75g17, complete se... 42 1.6
26gb|AC138133.26| Medicago truncatula clone mth2-9o2, complete seq... 42 1.6
27gb|AC146564.2| Medicago truncatula clone mth2-67l12, complete se... 42 1.6
28gb|AC149496.23| Medicago truncatula clone mth2-119c5, complete s... 42 1.6
29gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete s... 42 1.6
30gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete s... 42 1.6
31gb|AC127168.17| Medicago truncatula clone mth2-15m13, complete s... 42 1.6
32gb|AC137510.33| Medicago truncatula clone mth2-8m7, complete seq... 42 1.6
33gb|AC145753.1| Genomic sequence for Medicago truncatula, clone M... 42 1.6
34gb|AC090567.7| Homo sapiens chromosome 8, clone RP11-18L2, compl... 42 1.6
35gb|AC158388.2| Mus musculus BAC clone RP24-545I9 from chromosome... 42 1.6
36emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a... 42 1.6
37emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g... 42 1.6
38dbj|AP004949.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.6
39gb|AC144816.3| Mus musculus BAC clone RP24-243E15 from chromosom... 40 6.3
40emb|CR538723.1| M.truncatula DNA sequence from clone MTH2-27D24 ... 40 6.3
41gb|AC125459.4| Mus musculus BAC clone RP24-418N13 from chromosom... 40 6.3
42gb|AC127307.3| Mus musculus BAC clone RP23-291E6 from 6, complet... 40 6.3
43emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.3
44gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-3... 40 6.3
45gb|AC145023.4| Medicago truncatula clone mth2-30j24, complete se... 40 6.3
46gb|AC146709.11| Medicago truncatula clone mth2-90m14, complete s... 40 6.3
47gb|AC148405.5| Medicago truncatula clone mth2-37m7, complete seq... 40 6.3
48gb|AC138063.11| Medicago truncatula clone mth2-12h1, complete se... 40 6.3
49gb|AC148292.8| Medicago truncatula clone mth2-15m24, complete se... 40 6.3
50gb|AC124217.21| Medicago truncatula clone mth2-36d22, complete s... 40 6.3
51emb|AL161730.9| Human DNA sequence from clone RP11-441I5 on chro... 40 6.3
52emb|CR354594.13| Zebrafish DNA sequence from clone DKEY-173F1 in... 40 6.3
53gb|AC146864.23| Medicago truncatula clone mth2-175n24, complete ... 40 6.3
54gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete s... 40 6.3
55gb|AC060232.6| Homo sapiens chromosome 10 clone RP11-458D17, com... 40 6.3
56gb|AE010183.1| Pyrococcus furiosus DSM 3638, section 58 of 173 o... 40 6.3
57dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
58dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
59dbj|AP005821.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
60emb|BX510913.9| Zebrafish DNA sequence from clone CH211-202D4 in... 40 6.3
61emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.3
62emb|CT573218.4| CH250-10B18, complete sequence 40 6.3
63emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20... 40 6.3
64emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11... 40 6.3
65emb|CT030158.4| M.truncatula DNA sequence from clone MTH2-49E10 ... 40 6.3
66emb|CR940308.12| M.truncatula DNA sequence from clone MTH2-17G23... 40 6.3
67gb|AY833548.1| Pisum sativum transposon Stowaway MITEs Stow-Ps16... 40 6.3
68emb|AL607142.16| Mouse DNA sequence from clone RP23-98J9 on chro... 40 6.3 
>ref|NM_193764.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 777

 Score =  254 bits (128), Expect = 2e-64
 Identities = 164/176 (93%)
 Strand = Plus / Minus

                                                                       
Query: 260 cgaagtttctccttcactgaatacttcttggcagcgtctcgcaccttttcaatatatcct 319
           ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 773 cgaagtttctccttcacagaatacttcttggcagcatcccgcaccttttcaatataccct 714

                                                                       
Query: 320 tcaattggcggcgtgagcgttgccatgtagcggtttgcagggaaaggggtcatgtcagga 379
           |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 713 tcaattggtggcgtgagtgttgccatgtatcggtttgcagggaatggtgtcatgtcagga 654

                                                                   
Query: 380 accatagcagcagctcgcagcttctcaggtagtgcagcaatggcctccttcttgag 435
           | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 653 atcatagcagcagctcgcagcttctcagggagtgctgcaatggcctccttcttgag 598
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  254 bits (128), Expect = 2e-64
 Identities = 164/176 (93%)
 Strand = Plus / Plus

                                                                            
Query: 260      cgaagtttctccttcactgaatacttcttggcagcgtctcgcaccttttcaatatatcct 319
                ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 17991787 cgaagtttctccttcacagaatacttcttggcagcatcccgcaccttttcaatataccct 17991846

                                                                            
Query: 320      tcaattggcggcgtgagcgttgccatgtagcggtttgcagggaaaggggtcatgtcagga 379
                |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 17991847 tcaattggtggcgtgagtgttgccatgtatcggtttgcagggaatggtgtcatgtcagga 17991906

                                                                        
Query: 380      accatagcagcagctcgcagcttctcaggtagtgcagcaatggcctccttcttgag 435
                | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 17991907 atcatagcagcagctcgcagcttctcagggagtgctgcaatggcctccttcttgag 17991962



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 19      tgattaaaaaggaatggagggagtaa 44
               ||||||||| ||||||||||||||||
Sbjct: 8430221 tgattaaaatggaatggagggagtaa 8430196



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 29      ggaatggagggagtaaaact 48
               ||||||||||||||||||||
Sbjct: 2494261 ggaatggagggagtaaaact 2494242
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>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0054L14
          Length = 150022

 Score =  254 bits (128), Expect = 2e-64
 Identities = 164/176 (93%)
 Strand = Plus / Plus

                                                                         
Query: 260   cgaagtttctccttcactgaatacttcttggcagcgtctcgcaccttttcaatatatcct 319
             ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 19028 cgaagtttctccttcacagaatacttcttggcagcatcccgcaccttttcaatataccct 19087

                                                                         
Query: 320   tcaattggcggcgtgagcgttgccatgtagcggtttgcagggaaaggggtcatgtcagga 379
             |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 19088 tcaattggtggcgtgagtgttgccatgtatcggtttgcagggaatggtgtcatgtcagga 19147

                                                                     
Query: 380   accatagcagcagctcgcagcttctcaggtagtgcagcaatggcctccttcttgag 435
             | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 19148 atcatagcagcagctcgcagcttctcagggagtgctgcaatggcctccttcttgag 19203
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>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0520B06
          Length = 142667

 Score =  254 bits (128), Expect = 2e-64
 Identities = 164/176 (93%)
 Strand = Plus / Plus

                                                                          
Query: 260    cgaagtttctccttcactgaatacttcttggcagcgtctcgcaccttttcaatatatcct 319
              ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 111622 cgaagtttctccttcacagaatacttcttggcagcatcccgcaccttttcaatataccct 111681

                                                                          
Query: 320    tcaattggcggcgtgagcgttgccatgtagcggtttgcagggaaaggggtcatgtcagga 379
              |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 111682 tcaattggtggcgtgagtgttgccatgtatcggtttgcagggaatggtgtcatgtcagga 111741

                                                                      
Query: 380    accatagcagcagctcgcagcttctcaggtagtgcagcaatggcctccttcttgag 435
              | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 111742 atcatagcagcagctcgcagcttctcagggagtgctgcaatggcctccttcttgag 111797
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>dbj|AK058499.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F02, full
            insert sequence
          Length = 1470

 Score =  254 bits (128), Expect = 2e-64
 Identities = 164/176 (93%)
 Strand = Plus / Minus

                                                                        
Query: 260  cgaagtttctccttcactgaatacttcttggcagcgtctcgcaccttttcaatatatcct 319
            ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 1152 cgaagtttctccttcacagaatacttcttggcagcatcccgcaccttttcaatataccct 1093

                                                                        
Query: 320  tcaattggcggcgtgagcgttgccatgtagcggtttgcagggaaaggggtcatgtcagga 379
            |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 1092 tcaattggtggcgtgagtgttgccatgtatcggtttgcagggaatggtgtcatgtcagga 1033

                                                                    
Query: 380  accatagcagcagctcgcagcttctcaggtagtgcagcaatggcctccttcttgag 435
            | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1032 atcatagcagcagctcgcagcttctcagggagtgctgcaatggcctccttcttgag 977
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>gb|AY104891.1| Zea mays PCO129002 mRNA sequence
          Length = 952

 Score =  151 bits (76), Expect = 2e-33
 Identities = 129/147 (87%)
 Strand = Plus / Minus

                                                                       
Query: 283 cttcttggcagcgtctcgcaccttttcaatatatccttcaattggcggcgtgagcgttgc 342
           ||||||||| || || ||||| ||||||||||| ||||||||||| || ||||| || ||
Sbjct: 945 cttcttggccgcttcccgcactttttcaatatanccttcaattggtggtgtgagtgtcgc 886

                                                                       
Query: 343 catgtagcggtttgcagggaaaggggtcatgtcaggaaccatagcagcagctcgcagctt 402
           |||||| |||||||||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 885 catgtaccggtttgcagggaacggtgtcatgtcaggtaccatagcagcagctcgtagctt 826

                                      
Query: 403 ctcaggtagtgcagcaatggcctcctt 429
           |||||| || ||| ||| |||||||||
Sbjct: 825 ctcagggagagcatcaacggcctcctt 799
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>gb|AC144516.5| Medicago truncatula clone mth2-28p22, complete sequence
          Length = 111130

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 21     attaaaaaggaatggagggagta 43
              |||||||||||||||||||||||
Sbjct: 110170 attaaaaaggaatggagggagta 110192
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>gb|AC139747.15| Medicago truncatula clone mth2-9j10, complete sequence
          Length = 105246

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 22    ttaaaaaggaatggagggagtaa 44
             |||||||||||||||||||||||
Sbjct: 19165 ttaaaaaggaatggagggagtaa 19143
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>gb|AC151824.12| Medicago truncatula clone mth2-45n18, complete sequence
          Length = 99140

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 21    attaaaaaggaatggagggagta 43
             |||||||||||||||||||||||
Sbjct: 58007 attaaaaaggaatggagggagta 57985
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>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence
          Length = 134519

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 21    attaaaaaggaatggagggagta 43
             |||||||||||||||||||||||
Sbjct: 80566 attaaaaaggaatggagggagta 80588
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>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence
          Length = 130054

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 22    ttaaaaaggaatggagggagtaa 44
             |||||||||||||||||||||||
Sbjct: 14444 ttaaaaaggaatggagggagtaa 14422
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>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence
          Length = 140624

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 22     ttaaaaaggaatggagggagtaa 44
              |||||||||||||||||||||||
Sbjct: 131059 ttaaaaaggaatggagggagtaa 131081
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>gb|AC157502.2| Medicago truncatula chromosome 7 BAC clone mte1-56e23, complete
             sequence
          Length = 108844

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 21    attaaaaaggaatggagggagta 43
             |||||||||||||||||||||||
Sbjct: 92207 attaaaaaggaatggagggagta 92185
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>gb|AC157488.1| Medicago truncatula chromosome 2 BAC clone mte1-33n12, complete
             sequence
          Length = 93219

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 21    attaaaaaggaatggagggagta 43
             |||||||||||||||||||||||
Sbjct: 25595 attaaaaaggaatggagggagta 25617
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>gb|AC144541.12| Medicago truncatula clone mth2-28a1, complete sequence
          Length = 123800

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 23    taaaaaggaatggagggagtaa 44
             ||||||||||||||||||||||
Sbjct: 38073 taaaaaggaatggagggagtaa 38094
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>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence
          Length = 102937

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 22    ttaaaaaggaatggagggagta 43
             ||||||||||||||||||||||
Sbjct: 89807 ttaaaaaggaatggagggagta 89828
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>gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete sequence
          Length = 144306

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    aaaaggaatggagggagtaaaa 46
             ||||||||||||||||||||||
Sbjct: 96458 aaaaggaatggagggagtaaaa 96437
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>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19,
             complete sequence
          Length = 187601

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 19    tgattaaaaaggaatggagggagtaa 44
             ||||||||| ||||||||||||||||
Sbjct: 94413 tgattaaaatggaatggagggagtaa 94438
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>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0711E10
          Length = 157903

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 19   tgattaaaaaggaatggagggagtaa 44
            ||||||||| ||||||||||||||||
Sbjct: 5374 tgattaaaatggaatggagggagtaa 5349
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 19       tgattaaaaaggaatggagggagtaa 44
                ||||||||| ||||||||||||||||
Sbjct: 31761143 tgattaaaatggaatggagggagtaa 31761168



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 24       aaaaaggaatggagggagta 43
                ||||||||||||||||||||
Sbjct: 24946258 aaaaaggaatggagggagta 24946277
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>gb|AC073271.4| Homo sapiens BAC clone RP11-541O14 from 2, complete sequence
          Length = 117930

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 82    gatcttgcaaataaaaattgtg 103
             ||||||||||||||||||||||
Sbjct: 44023 gatcttgcaaataaaaattgtg 44002
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>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0705D01
          Length = 147174

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 19    tgattaaaaaggaatggagggagtaa 44
             ||||||||| ||||||||||||||||
Sbjct: 45176 tgattaaaatggaatggagggagtaa 45151
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>gb|AF163150.1|AF163150 Glycine max acetyl-CoA carboxylase (accC-3) gene, complete cds;
           nuclear gene for chloroplast product
          Length = 9180

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 22  ttaaaaaggaatggagggagta 43
           ||||||||||||||||||||||
Sbjct: 104 ttaaaaaggaatggagggagta 83
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>gb|AC154354.2| Mus musculus BAC clone RP23-203C5 from chromosome 14, complete
            sequence
          Length = 238278

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 356  gcagggaaaggggtcatgtca 376
            |||||||||||||||||||||
Sbjct: 1151 gcagggaaaggggtcatgtca 1131
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>gb|AC183502.5| Medicago truncatula clone mth2-75g17, complete sequence
          Length = 121928

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 26     aaaggaatggagggagtaaaa 46
              |||||||||||||||||||||
Sbjct: 113874 aaaggaatggagggagtaaaa 113854
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>gb|AC138133.26| Medicago truncatula clone mth2-9o2, complete sequence
          Length = 149166

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    taaaaaggaatggagggagta 43
             |||||||||||||||||||||
Sbjct: 49073 taaaaaggaatggagggagta 49053
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>gb|AC146564.2| Medicago truncatula clone mth2-67l12, complete sequence
          Length = 128650

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 20    gattaaaaaggaatggagggagtaa 44
             ||||||||||||| |||||||||||
Sbjct: 68691 gattaaaaaggaacggagggagtaa 68667
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>gb|AC149496.23| Medicago truncatula clone mth2-119c5, complete sequence
          Length = 115576

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     taaaaaggaatggagggagta 43
              |||||||||||||||||||||
Sbjct: 100939 taaaaaggaatggagggagta 100919
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>gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete sequence
          Length = 116410

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    aaaggaatggagggagtaaaa 46
             |||||||||||||||||||||
Sbjct: 86259 aaaggaatggagggagtaaaa 86279
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>gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete sequence
          Length = 116410

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    aaaggaatggagggagtaaaa 46
             |||||||||||||||||||||
Sbjct: 86259 aaaggaatggagggagtaaaa 86279
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>gb|AC127168.17| Medicago truncatula clone mth2-15m13, complete sequence
          Length = 117770

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 22    ttaaaaaggaatggagggagtaaaa 46
             ||||||||||| |||||||||||||
Sbjct: 55063 ttaaaaaggaacggagggagtaaaa 55087
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>gb|AC137510.33| Medicago truncatula clone mth2-8m7, complete sequence
          Length = 108759

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 20    gattaaaaaggaatggagggagtaa 44
             ||||||||||||| |||||||||||
Sbjct: 48798 gattaaaaaggaacggagggagtaa 48774
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>gb|AC145753.1| Genomic sequence for Medicago truncatula, clone MTABa0058M19, complete
             sequence
          Length = 101565

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 22    ttaaaaaggaatggagggagtaaaa 46
             ||||||||||| |||||||||||||
Sbjct: 59243 ttaaaaaggaacggagggagtaaaa 59219
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>gb|AC090567.7| Homo sapiens chromosome 8, clone RP11-18L2, complete sequence
          Length = 182622

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     aaaaaggaatggagggagtaa 44
              |||||||||||||||||||||
Sbjct: 112688 aaaaaggaatggagggagtaa 112668
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>gb|AC158388.2| Mus musculus BAC clone RP24-545I9 from chromosome 14, complete sequence
          Length = 183148

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 356   gcagggaaaggggtcatgtca 376
             |||||||||||||||||||||
Sbjct: 43234 gcagggaaaggggtcatgtca 43254
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>emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a19, COMPLETE SEQUENCE
          Length = 128818

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 25    aaaaggaatggagggagtaaa 45
             |||||||||||||||||||||
Sbjct: 48969 aaaaggaatggagggagtaaa 48949
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>emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g11, COMPLETE SEQUENCE
          Length = 126690

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 22    ttaaaaaggaatggagggagtaaaa 46
             ||||||||||| |||||||||||||
Sbjct: 80803 ttaaaaaggaacggagggagtaaaa 80779
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>dbj|AP004949.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45F11, TM0122,
             complete sequence
          Length = 90864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    taaaaaggaatggagggagta 43
             |||||||||||||||||||||
Sbjct: 36801 taaaaaggaatggagggagta 36781
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>gb|AC144816.3| Mus musculus BAC clone RP24-243E15 from chromosome 6, complete sequence
          Length = 167096

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      taaatcatgtatgctgatta 24
              ||||||||||||||||||||
Sbjct: 148939 taaatcatgtatgctgatta 148920
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>emb|CR538723.1| M.truncatula DNA sequence from clone MTH2-27D24 on chromosome 3,
             complete sequence
          Length = 106695

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    aaaaggaatggagggagtaa 44
             ||||||||||||||||||||
Sbjct: 60903 aaaaggaatggagggagtaa 60922
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>gb|AC125459.4| Mus musculus BAC clone RP24-418N13 from chromosome 8, complete sequence
          Length = 194237

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 369   tcatgtcaggaaccatagcagcag 392
             |||||||||||| |||||||||||
Sbjct: 69398 tcatgtcaggaatcatagcagcag 69421
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>gb|AC127307.3| Mus musculus BAC clone RP23-291E6 from 6, complete sequence
          Length = 211245

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      taaatcatgtatgctgatta 24
              ||||||||||||||||||||
Sbjct: 146702 taaatcatgtatgctgatta 146721
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aaaaaggaatggagggagta 43
             ||||||||||||||||||||
Sbjct: 66843 aaaaaggaatggagggagta 66862
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>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
          Length = 172016

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     aaaaggaatggagggagtaa 44
              ||||||||||||||||||||
Sbjct: 104584 aaaaggaatggagggagtaa 104565
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>gb|AC145023.4| Medicago truncatula clone mth2-30j24, complete sequence
          Length = 90381

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    gattaaaaaggaatggagggagta 43
             ||||||||||||| ||||||||||
Sbjct: 38141 gattaaaaaggaacggagggagta 38164
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>gb|AC146709.11| Medicago truncatula clone mth2-90m14, complete sequence
          Length = 110472

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaaaggaatggagggagtaa 44
             ||||||||||||||||||||
Sbjct: 25653 aaaaggaatggagggagtaa 25634
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>gb|AC148405.5| Medicago truncatula clone mth2-37m7, complete sequence
          Length = 115984

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    aaaaaggaatggagggagta 43
             ||||||||||||||||||||
Sbjct: 82345 aaaaaggaatggagggagta 82326
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>gb|AC138063.11| Medicago truncatula clone mth2-12h1, complete sequence
          Length = 104547

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     attaaaaaggaatggagggagtaa 44
              |||||||||||| |||||||||||
Sbjct: 101652 attaaaaaggaacggagggagtaa 101629
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>gb|AC148292.8| Medicago truncatula clone mth2-15m24, complete sequence
          Length = 120077

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    ttaaaaaggaatggagggagtaaa 45
             ||||||||||| ||||||||||||
Sbjct: 71984 ttaaaaaggaacggagggagtaaa 72007
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>gb|AC124217.21| Medicago truncatula clone mth2-36d22, complete sequence
          Length = 133899

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 22   ttaaaaaggaatggagggagtaaa 45
            ||||||||||| ||||||||||||
Sbjct: 3393 ttaaaaaggaacggagggagtaaa 3416
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>emb|AL161730.9| Human DNA sequence from clone RP11-441I5 on chromosome 9 Contains the
             DMRTA1 gene for DMRT-like family A1 (DMO) and a CpG
             island, complete sequence
          Length = 170066

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 256   tcaacgaagtttctccttcactga 279
             |||||||||| |||||||||||||
Sbjct: 64566 tcaacgaagtctctccttcactga 64543
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>emb|CR354594.13| Zebrafish DNA sequence from clone DKEY-173F1 in linkage group 13,
            complete sequence
          Length = 196408

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   tcttgcaaataaaaattgtg 103
            ||||||||||||||||||||
Sbjct: 3119 tcttgcaaataaaaattgtg 3100
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>gb|AC146864.23| Medicago truncatula clone mth2-175n24, complete sequence
          Length = 113106

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 21   attaaaaaggaatggagggagtaa 44
            |||||||||||| |||||||||||
Sbjct: 2896 attaaaaaggaacggagggagtaa 2919
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>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence
          Length = 136333

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaaaggaatggagggagtaa 44
             ||||||||||||||||||||
Sbjct: 39982 aaaaggaatggagggagtaa 39963
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>gb|AC060232.6| Homo sapiens chromosome 10 clone RP11-458D17, complete sequence
          Length = 167912

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 256   tcaacgaagtttctccttcactga 279
             |||||||||| |||||||||||||
Sbjct: 62412 tcaacgaagtctctccttcactga 62389
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>gb|AE010183.1| Pyrococcus furiosus DSM 3638, section 58 of 173 of the complete genome
          Length = 13072

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   tttcaatatatccttcaatt 325
             ||||||||||||||||||||
Sbjct: 10276 tttcaatatatccttcaatt 10295
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 29     ggaatggagggagtaaaactgaagtgaa 56
              ||||||||||||||| ||||||| ||||
Sbjct: 595343 ggaatggagggagtacaactgaattgaa 595316
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>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0416D03
          Length = 157112

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    ggaatggagggagtaaaact 48
             ||||||||||||||||||||
Sbjct: 48682 ggaatggagggagtaaaact 48663
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>dbj|AP005821.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0094B20
          Length = 146270

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 29    ggaatggagggagtaaaactgaagtgaa 56
             ||||||||||||||| ||||||| ||||
Sbjct: 48353 ggaatggagggagtacaactgaattgaa 48326
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>emb|BX510913.9| Zebrafish DNA sequence from clone CH211-202D4 in linkage group 22,
             complete sequence
          Length = 203952

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 320   tcaattggcggcgtgagcgttgcc 343
             |||||||||||||| |||||||||
Sbjct: 39319 tcaattggcggcgtcagcgttgcc 39296
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aaaaaggaatggagggagta 43
             ||||||||||||||||||||
Sbjct: 74549 aaaaaggaatggagggagta 74568
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>emb|CT573218.4| CH250-10B18, complete sequence
          Length = 190487

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 256   tcaacgaagtttctccttcactga 279
             |||||||||| |||||||||||||
Sbjct: 72758 tcaacgaagtgtctccttcactga 72781
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>emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20 on chromosome 3,
             complete sequence
          Length = 116350

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaaaggaatggagggagtaa 44
             ||||||||||||||||||||
Sbjct: 91092 aaaaggaatggagggagtaa 91073
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>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE
          Length = 136557

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aaaaaggaatggagggagta 43
             ||||||||||||||||||||
Sbjct: 95654 aaaaaggaatggagggagta 95673



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaaaggaatggagggagtaa 44
             ||||||||||||||||||||
Sbjct: 95414 aaaaggaatggagggagtaa 95395
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>emb|CT030158.4| M.truncatula DNA sequence from clone MTH2-49E10 on chromosome 3,
             complete sequence
          Length = 122591

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    attaaaaaggaatggagggagtaa 44
             |||||||||||| |||||||||||
Sbjct: 13258 attaaaaaggaacggagggagtaa 13281
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>emb|CR940308.12| M.truncatula DNA sequence from clone MTH2-17G23 on chromosome 3,
             complete sequence
          Length = 121494

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    attaaaaaggaatggagggagtaa 44
             |||||||||||| |||||||||||
Sbjct: 58810 attaaaaaggaacggagggagtaa 58787
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>gb|AY833548.1| Pisum sativum transposon Stowaway MITEs Stow-Ps16 and Stow-Ps17,
           complete sequence
          Length = 1268

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 22  ttaaaaaggaatggagggagtaaa 45
           ||||||||||| ||||||||||||
Sbjct: 763 ttaaaaaggaacggagggagtaaa 786
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>emb|AL607142.16| Mouse DNA sequence from clone RP23-98J9 on chromosome 4, complete
              sequence
          Length = 188716

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    aaagactctttcctcccctg 247
              ||||||||||||||||||||
Sbjct: 154383 aaagactctttcctcccctg 154402


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,530,261
Number of Sequences: 3902068
Number of extensions: 4530261
Number of successful extensions: 86621
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86181
Number of HSP's gapped (non-prelim): 440
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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