>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6684

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 405  KAVVDGGACKCEAYFHDYDIMEDFQH----GDPNSDPRWN 298
            K+ V G +  C+A    YD + DFQH     D  SDP WN
Sbjct: 1935 KSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWN 1974

>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 819

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 78  QPPTDLKEPINDPNRTHIVHEHG 146
           +PP DLK PIND N+  ++H  G
Sbjct: 413 KPPLDLKHPINDENQDGVMHSDG 435

>FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 783

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 78  QPPTDLKEPINDPNRTHIVHEHG 146
           +PP DLK P+N+ N+  + H  G
Sbjct: 425 KPPFDLKSPVNEDNQDGVTHSDG 447

>LTB1S_HUMAN (P22064) Latent transforming growth factor beta-binding protein,|
            isoform 1S precursor (LTBP-1) (Transforming growth factor
            beta-1-binding protein 1) (TGF-beta1-BP-1)
          Length = 1394

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 169  SISHPPKVC*NLHDCCLQNTACPSHSRVVLLIFCNNAHDLVRCV 300
            SIS   + C ++ D C+ NT C SH       FC+N     RC+
Sbjct: 907  SISADGRTCEDI-DECVNNTVCDSHG------FCDNTAGSFRCL 943

>LTB1S_MOUSE (Q8CG18) Latent transforming growth factor beta-binding protein,|
            isoform 1S precursor (LTBP-1) (Transforming growth factor
            beta-1-binding protein 1) (TGF-beta1-BP-1)
          Length = 1389

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 169  SISHPPKVC*NLHDCCLQNTACPSHSRVVLLIFCNNAHDLVRCV 300
            SIS   + C ++ D C+ NT C SH       FC+N     RC+
Sbjct: 903  SISADGRTCEDI-DECVNNTVCDSHG------FCDNTAGSFRCL 939

>SYA_STRCO (Q9KXP9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 890

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 54  QPYVIT*FQPPTDLKEPINDPNRTHIVHEHGKKTRHKFFY 173
           +PY +   +PP D    +    RT  + E GK TRH  F+
Sbjct: 45  KPYFLGEVKPPFDRATSVQKCVRTPDIEEVGKTTRHGTFF 84

>LTBP1_RAT (Q00918) Latent transforming growth factor beta-binding protein 1|
            precursor (LTBP-1) (Transforming growth factor
            beta-1-binding protein 1) (TGF-beta-1-BP-1) (Transforming
            growth factor beta-1-masking protein, large subunit)
          Length = 1712

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 169  SISHPPKVC*NLHDCCLQNTACPSHSRVVLLIFCNNAHDLVRCV 300
            SIS   + C ++ D C+ NT C SH       FC+N     RC+
Sbjct: 1226 SISADGRTCEDI-DECVNNTVCDSHG------FCDNTAGSFRCL 1262

>LTB1L_MOUSE (Q8CG19) Latent transforming growth factor beta-binding protein,|
            isoform 1L precursor (LTBP-1) (Transforming growth factor
            beta-1-binding protein 1) (TGF-beta1-BP-1)
          Length = 1713

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 169  SISHPPKVC*NLHDCCLQNTACPSHSRVVLLIFCNNAHDLVRCV 300
            SIS   + C ++ D C+ NT C SH       FC+N     RC+
Sbjct: 1227 SISADGRTCEDI-DECVNNTVCDSHG------FCDNTAGSFRCL 1263

>LTB1L_HUMAN (Q14766) Latent transforming growth factor beta-binding protein,|
            isoform 1L precursor (LTBP-1) (Transforming growth factor
            beta-1-binding protein 1) (TGF-beta1-BP-1)
          Length = 1595

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 169  SISHPPKVC*NLHDCCLQNTACPSHSRVVLLIFCNNAHDLVRCV 300
            SIS   + C ++ D C+ NT C SH       FC+N     RC+
Sbjct: 1108 SISADGRTCEDI-DECVNNTVCDSHG------FCDNTAGSFRCL 1144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,599,698
Number of Sequences: 219361
Number of extensions: 1245987
Number of successful extensions: 2599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2598
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)