ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC126403.7| Mus musculus chromosome 15, clone RP24-483E7, com... 42 1.5
2gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, comp... 42 1.5
3gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, compl... 42 1.5
4gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosom... 42 1.5
5gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.8
6gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome... 40 5.8
7gb|AC183276.3| Pan troglodytes BAC clone CH251-50A9 from chromos... 40 5.8
8gb|AF390860.1| Homo sapiens isolate UPN2 CBFB/MYH11 translocatio... 40 5.8
9gb|AC116564.5| Homo sapiens BAC clone RP11-761E7 from 4, complet... 40 5.8
10gb|AC093746.3| Homo sapiens BAC clone RP11-27P15 from 4, complet... 40 5.8
11gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, comp... 40 5.8
12dbj|AK115161.1| Ciona intestinalis cDNA, clone:cieg036h12, full ... 40 5.8

>gb|AC126403.7| Mus musculus chromosome 15, clone RP24-483E7, complete sequence
          Length = 152384

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    tggaaagaaaactaggcacaa 163
              |||||||||||||||||||||
Sbjct: 140661 tggaaagaaaactaggcacaa 140681



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>gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, complete sequence
          Length = 200074

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   tggaaagaaaactaggcacaa 163
             |||||||||||||||||||||
Sbjct: 81115 tggaaagaaaactaggcacaa 81135



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>gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, complete sequence
          Length = 159624

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    ttccaacctccaactgattta 95
             |||||||||||||||||||||
Sbjct: 68874 ttccaacctccaactgattta 68894



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>gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosome 9, complete sequence
          Length = 152468

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   aaagaaaactaggcacaaatt 166
             |||||||||||||||||||||
Sbjct: 33020 aaagaaaactaggcacaaatt 33040



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 126     cacattgttcatgagcatgg 145
               ||||||||||||||||||||
Sbjct: 1953570 cacattgttcatgagcatgg 1953551



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>gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome 12, complete sequence
          Length = 216095

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   cacacattgttcatgagcat 143
             ||||||||||||||||||||
Sbjct: 51877 cacacattgttcatgagcat 51858



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>gb|AC183276.3| Pan troglodytes BAC clone CH251-50A9 from chromosome 19, complete
             sequence
          Length = 180204

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   aaagaaaactaggcacaaat 165
             ||||||||||||||||||||
Sbjct: 51189 aaagaaaactaggcacaaat 51170



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>gb|AF390860.1| Homo sapiens isolate UPN2 CBFB/MYH11 translocation breakpoint
           region sequence
          Length = 1353

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 21  aaatgggaatgttttctccacagtgaat 48
           |||| ||||||||||||||| |||||||
Sbjct: 136 aaataggaatgttttctccaaagtgaat 163



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>gb|AC116564.5| Homo sapiens BAC clone RP11-761E7 from 4, complete sequence
          Length = 159435

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    tccacagtgaatatgcccaa 56
             ||||||||||||||||||||
Sbjct: 84219 tccacagtgaatatgcccaa 84238



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>gb|AC093746.3| Homo sapiens BAC clone RP11-27P15 from 4, complete sequence
          Length = 169391

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     tccacagtgaatatgcccaa 56
              ||||||||||||||||||||
Sbjct: 114961 tccacagtgaatatgcccaa 114980



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>gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, complete sequence
          Length = 204493

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 146    aaagaaaactaggcacaaattctt 169
              ||||||||| ||||||||||||||
Sbjct: 200291 aaagaaaacaaggcacaaattctt 200314



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>dbj|AK115161.1| Ciona intestinalis cDNA, clone:cieg036h12, full insert sequence
          Length = 1592

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 78  caacctccaactgatttaaaggaa 101
           ||||||||||||||||||| ||||
Sbjct: 779 caacctccaactgatttaatggaa 802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,636,366
Number of Sequences: 3902068
Number of extensions: 3636366
Number of successful extensions: 64111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64082
Number of HSP's gapped (non-prelim): 29
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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