ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HUNB_DROTA (O46260) Protein hunchback (Fragments) 31 0.84
2HUNB_DROPO (O46252) Protein hunchback (Fragments) 28 4.2
3CAUP_DROME (P54269) Homeobox protein caupolican 28 5.5
4YNL6_YEAST (P53924) RING finger protein YNL116W 28 5.5
5TESK1_MOUSE (O70146) Dual specificity testis-specific protein ki... 28 7.1
6TESK1_RAT (Q63572) Dual specificity testis-specific protein kina... 28 7.1
7MATN3_CHICK (O42401) Matrilin-3 precursor 28 7.1

>HUNB_DROTA (O46260) Protein hunchback (Fragments)|
          Length = 192

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = +2

Query: 80  ESVGGKAHANHASYISHTCSRRLTTTPHMTPDRRHLKLRDPPQNTKNKIRQMISINRVMN 259
           E +    H +HA +  H  S    ++PH +P    L   +PP NT  ++ Q +   +   
Sbjct: 13  EPISHHHHHHHAHHSHHADSNSNASSPHQSP----LPSPNPPSNTNLQLEQYLKQQQQQQ 68

Query: 260 CNQQRGQSACMHAC 301
              Q+ Q      C
Sbjct: 69  QQHQQQQQPMDTLC 82



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>HUNB_DROPO (O46252) Protein hunchback (Fragments)|
          Length = 193

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +2

Query: 101 HANHASYISHTCSRRLTTTPHMTPDRRHLKLRDPPQNTKNKIRQMISINRVMNCNQQRGQ 280
           HA+H+ +   + S    ++PH +P    L   +PP NT  ++ Q +   +     QQ+ Q
Sbjct: 23  HAHHSHHRHDSNSNSNASSPHQSP----LPSPNPPSNTNLQLEQYLKQQQQQQQLQQQQQ 78

Query: 281 SACMHAC 301
                 C
Sbjct: 79  QPMDTLC 85



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>CAUP_DROME (P54269) Homeobox protein caupolican|
          Length = 693

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 71  PYTESVGGKAHANHASYISHTCSRRLTTTPHMTPDRRHLKLRDPPQN 211
           PY    G  AH  HA+Y S+  S    T PH    + H + +   QN
Sbjct: 369 PYATPPG--AHPMHAAYSSYAQSHNTHTHPHPQQMQHHQQQQQQQQN 413



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>YNL6_YEAST (P53924) RING finger protein YNL116W|
          Length = 522

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 102 CAFPPTDSVYGVPCI-TWHYLCVTKIPNQSYKFF 4
           C   P  +++  PC  +WH+ CV ++   SY  F
Sbjct: 438 CKIKPCQAIFISPCAHSWHFRCVRRLVMLSYPQF 471



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>TESK1_MOUSE (O70146) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 627

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 185 LKLRDPPQNTKNKIRQMISINRVMNCNQQRGQSACMH 295
           LK+   P N  N +R++  +NR+ + N  R    C+H
Sbjct: 80  LKMNKLPSNRSNTLREVQLMNRLRHPNILRFMGVCVH 116



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>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 628

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 185 LKLRDPPQNTKNKIRQMISINRVMNCNQQRGQSACMH 295
           LK+   P N  N +R++  +NR+ + N  R    C+H
Sbjct: 80  LKMNKLPSNRSNTLREVQLMNRLRHPNILRFMGVCVH 116



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>MATN3_CHICK (O42401) Matrilin-3 precursor|
          Length = 452

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 157 GRRQAS*TCVGNVGSMVCMCFPAH 86
           GR +    CV N GS VC CF  +
Sbjct: 283 GRHECDQICVSNNGSYVCECFEGY 306


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,463,725
Number of Sequences: 219361
Number of extensions: 1084109
Number of successful extensions: 3190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3189
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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