>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  180 bits (91), Expect = 3e-42
 Identities = 264/321 (82%), Gaps = 3/321 (0%)
 Strand = Plus / Minus

                                                                            
Query: 201      agaacggcgacgggcggccgccggctgtgcctgggttccatctgtagccggcttcaggcg 260
                ||||||||| ||||||||| ||| | |  || |||||||||| |||| ||||||| ||||
Sbjct: 14608923 agaacggcgccgggcggccaccgccggctccagggttccatccgtaggcggcttccggcg 14608864

                                                                            
Query: 261      gcagctgcacgttgccgaggaggttgggtggcagcccttcgaagaggcttggatccacgt 320
                ||||||||||||| ||||| ||||| ||||| || |||| ||||||||||||||| ||| 
Sbjct: 14608863 gcagctgcacgtttccgagtaggtttggtggtagtccttggaagaggcttggatcgacgg 14608804

                                                                            
Query: 321      ccccgccggccatctgagatgcttgctgcccagcagccagcagcatcccgttgctgtctg 380
                |||||||||| | ||| |  ||||||||||| || ||    |||| |||   |||||| |
Sbjct: 14608803 ccccgccggcgagctgcgccgcttgctgccccgcggc---gagcaacccagcgctgtcgg 14608747

                                                                            
Query: 381      cctgcccttgcgctgcaagcaactcgtcttcctccaacggcaatcgctcgtagacagcgt 440
                | |||||||| || || || | |||||| |||||||||||||  |||||||| || ||||
Sbjct: 14608746 cttgcccttgagccgccagtagctcgtcgtcctccaacggcagccgctcgtacaccgcgt 14608687

                                                                            
Query: 441      tggcgaaggaggccgccattatcaccaccggccccgcggcggtcagcgagccgacaacgg 500
                | || || || ||||||||||||||||| ||||| || |||||||||| |||||| ||| 
Sbjct: 14608686 tcgcaaaagacgccgccattatcaccacaggcccagccgcggtcagcgcgccgacgacgc 14608627

                                     
Query: 501      tgccgcccaccacctgcccct 521
                |||||||||| ||||| ||||
Sbjct: 14608626 tgccgcccacgacctggccct 14608606



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 411      cctccaacggcaatcgctcgtagacagcgttggcgaaggaggccgccattatcaccaccg 470
                |||||| |||||  |||||||| || ||||| ||||| ||||||||||| |  || || |
Sbjct: 29591106 cctccagcggcagccgctcgtacacggcgttcgcgaatgaggccgccatcaggacgacgg 29591165

                                                                   
Query: 471      gccccgcggcggtcagcgagccgacaacggtgccgcccaccacctgcccct 521
                |||||||||||  ||||| ||| || ||| ||||||| | |||||| ||||
Sbjct: 29591166 gccccgcggcgaccagcgggcccaccacgctgccgccgatcacctggccct 29591216

>dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0075E08
          Length = 130947

 Score =  180 bits (91), Expect = 3e-42
 Identities = 264/321 (82%), Gaps = 3/321 (0%)
 Strand = Plus / Minus

                                                                          
Query: 201    agaacggcgacgggcggccgccggctgtgcctgggttccatctgtagccggcttcaggcg 260
              ||||||||| ||||||||| ||| | |  || |||||||||| |||| ||||||| ||||
Sbjct: 112939 agaacggcgccgggcggccaccgccggctccagggttccatccgtaggcggcttccggcg 112880

                                                                          
Query: 261    gcagctgcacgttgccgaggaggttgggtggcagcccttcgaagaggcttggatccacgt 320
              ||||||||||||| ||||| ||||| ||||| || |||| ||||||||||||||| ||| 
Sbjct: 112879 gcagctgcacgtttccgagtaggtttggtggtagtccttggaagaggcttggatcgacgg 112820

                                                                          
Query: 321    ccccgccggccatctgagatgcttgctgcccagcagccagcagcatcccgttgctgtctg 380
              |||||||||| | ||| |  ||||||||||| || ||    |||| |||   |||||| |
Sbjct: 112819 ccccgccggcgagctgcgccgcttgctgccccgcggc---gagcaacccagcgctgtcgg 112763

                                                                          
Query: 381    cctgcccttgcgctgcaagcaactcgtcttcctccaacggcaatcgctcgtagacagcgt 440
              | |||||||| || || || | |||||| |||||||||||||  |||||||| || ||||
Sbjct: 112762 cttgcccttgagccgccagtagctcgtcgtcctccaacggcagccgctcgtacaccgcgt 112703

                                                                          
Query: 441    tggcgaaggaggccgccattatcaccaccggccccgcggcggtcagcgagccgacaacgg 500
              | || || || ||||||||||||||||| ||||| || |||||||||| |||||| ||| 
Sbjct: 112702 tcgcaaaagacgccgccattatcaccacaggcccagccgcggtcagcgcgccgacgacgc 112643

                                   
Query: 501    tgccgcccaccacctgcccct 521
              |||||||||| ||||| ||||
Sbjct: 112642 tgccgcccacgacctggccct 112622

>ref|XM_483808.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1398

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 467 accggccccgcggcggtcagcgagccgacaacggtgccgcccaccacctgcccct 521
           ||||||||||| ||||| ||||  || || ||| |||||||||||||||||||||
Sbjct: 834 accggccccgccgcggtgagcgtccccaccacgctgccgcccaccacctgcccct 780

>ref|XM_467450.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1011

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                       
Query: 411 cctccaacggcaatcgctcgtagacagcgttggcgaaggaggccgccattatcaccaccg 470
           |||||| |||||  |||||||| || ||||| ||||| ||||||||||| |  || || |
Sbjct: 757 cctccagcggcagccgctcgtacacggcgttcgcgaatgaggccgccatcaggacgacgg 698

                                                              
Query: 471 gccccgcggcggtcagcgagccgacaacggtgccgcccaccacctgcccct 521
           |||||||||||  ||||| ||| || ||| ||||||| | |||||| ||||
Sbjct: 697 gccccgcggcgaccagcgggcccaccacgctgccgccgatcacctggccct 647

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 467      accggccccgcggcggtcagcgagccgacaacggtgccgcccaccacctgcccct 521
                ||||||||||| ||||| ||||  || || ||| |||||||||||||||||||||
Sbjct: 28194346 accggccccgccgcggtgagcgtccccaccacgctgccgcccaccacctgcccct 28194400

>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1479_B12
          Length = 127089

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Plus

                                                                         
Query: 411   cctccaacggcaatcgctcgtagacagcgttggcgaaggaggccgccattatcaccaccg 470
             |||||| |||||  |||||||| || ||||| ||||| ||||||||||| |  || || |
Sbjct: 48827 cctccagcggcagccgctcgtacacggcgttcgcgaatgaggccgccatcaggacgacgg 48886

                                                                
Query: 471   gccccgcggcggtcagcgagccgacaacggtgccgcccaccacctgcccct 521
             |||||||||||  ||||| ||| || ||| ||||||| | |||||| ||||
Sbjct: 48887 gccccgcggcgaccagcgggcccaccacgctgccgccgatcacctggccct 48937

>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 467   accggccccgcggcggtcagcgagccgacaacggtgccgcccaccacctgcccct 521
             ||||||||||| ||||| ||||  || || ||| |||||||||||||||||||||
Sbjct: 77819 accggccccgccgcggtgagcgtccccaccacgctgccgcccaccacctgcccct 77873

>dbj|AK110263.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-B06, full
           insert sequence
          Length = 1398

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 467 accggccccgcggcggtcagcgagccgacaacggtgccgcccaccacctgcccct 521
           ||||||||||| ||||| ||||  || || ||| |||||||||||||||||||||
Sbjct: 834 accggccccgccgcggtgagcgtccccaccacgctgccgcccaccacctgcccct 780

>ref|NM_067052.2| Caenorhabditis elegans SMC (structural maintenance of chromosomes)
            family member (smc-3) (smc-3) mRNA, complete cds
          Length = 4073

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 71   aagatccgaaatcgtatgcaa 91
            |||||||||||||||||||||
Sbjct: 2186 aagatccgaaatcgtatgcaa 2206

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 425      cgctcgtagacagcgttggcgaagg 449
                ||||||||||| |||||||||||||
Sbjct: 24715296 cgctcgtagacggcgttggcgaagg 24715272

>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0029G06
          Length = 169711

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 425   cgctcgtagacagcgttggcgaagg 449
             ||||||||||| |||||||||||||
Sbjct: 48977 cgctcgtagacggcgttggcgaagg 48953

>emb|AL117202.1|CEY47D3A Caenorhabditis elegans YAC Y47D3A, complete sequence
          Length = 199814

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 71     aagatccgaaatcgtatgcaa 91
              |||||||||||||||||||||
Sbjct: 162931 aagatccgaaatcgtatgcaa 162951

>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
            complete sequence
          Length = 71193

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  ggcgacgggcggccgccggc 225
            ||||||||||||||||||||
Sbjct: 3167 ggcgacgggcggccgccggc 3186

>gb|AY781103.1| Rattus norvegicus strain BN/Cub promyelocytic leukemia zinc finger
           protein (Zfp145) mRNA, complete cds
          Length = 2331

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 499 ggtgccgcccaccacctgcc 518
           ||||||||||||||||||||
Sbjct: 866 ggtgccgcccaccacctgcc 847

>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H03,
              complete sequence
          Length = 185881

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    ggcgacgggcggccgccggc 225
              ||||||||||||||||||||
Sbjct: 170835 ggcgacgggcggccgccggc 170854

>ref|XM_413838.1| PREDICTED: Gallus gallus similar to hypothetical protein MGC29937
           (LOC415460), mRNA
          Length = 1184

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 caccaccggccccgcggcgg 482
           ||||||||||||||||||||
Sbjct: 186 caccaccggccccgcggcgg 167

>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    cgcggcggtcagcgagccga 494
              ||||||||||||||||||||
Sbjct: 273821 cgcggcggtcagcgagccga 273802

>gb|AY371697.2| Homo sapiens integrin, alpha 8 (ITGA8) gene, complete cds
          Length = 206310

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   ccaattaaaacacataataa 159
             ||||||||||||||||||||
Sbjct: 33546 ccaattaaaacacataataa 33527

>emb|AL359645.16| Human DNA sequence from clone RP11-39J5 on chromosome 10 Contains the
             5' end of the ITGA8 gene for integrin alpha 8 and CpG
             island, complete sequence
          Length = 149200

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   ccaattaaaacacataataa 159
             ||||||||||||||||||||
Sbjct: 91310 ccaattaaaacacataataa 91329

>ref|NM_212841.1| Danio rerio brain specific kinase 146 (bsk146), mRNA
          Length = 2428

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 396  caagcaactcgtcttcctcc 415
            ||||||||||||||||||||
Sbjct: 1148 caagcaactcgtcttcctcc 1129

>emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1
          Length = 218160

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 350    ccagcagccagcagcatcccgttg 373
              ||||||| ||||||||||||||||
Sbjct: 145472 ccagcagacagcagcatcccgttg 145495

>emb|AL355929.1|NCB21J21 Neurospora crassa genomic DNA BAC clone B21J21
          Length = 64814

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   caccaccggccccgcggcgg 482
             ||||||||||||||||||||
Sbjct: 23727 caccaccggccccgcggcgg 23708

>gb|AC159655.8| Mus musculus 6 BAC RP24-559F15 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 200889

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     catatcagaaacaatcctga 51
              ||||||||||||||||||||
Sbjct: 159249 catatcagaaacaatcctga 159230

>gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence
          Length = 180461

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 350    ccagcagccagcagcatcccgttg 373
              ||||||| ||||||||||||||||
Sbjct: 126192 ccagcagacagcagcatcccgttg 126215

>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence
          Length = 215022

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 337   agatgcttgctgcccagcagccag 360
             |||||||||||||| |||||||||
Sbjct: 87179 agatgcttgctgccaagcagccag 87202

>gb|AC155651.4| Mus musculus 6 BAC RP24-111E13 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 175599

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   catatcagaaacaatcctga 51
            ||||||||||||||||||||
Sbjct: 4493 catatcagaaacaatcctga 4474

>emb|BX934000.2| Gallus gallus finished cDNA, clone ChEST56d3
          Length = 1067

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 caccaccggccccgcggcgg 482
           ||||||||||||||||||||
Sbjct: 69  caccaccggccccgcggcgg 50

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 206      ggcgacgggcggccgccggc 225
                ||||||||||||||||||||
Sbjct: 10786235 ggcgacgggcggccgccggc 10786254

>dbj|AK065530.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034C21, full
           insert sequence
          Length = 1925

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 ggcgacgggcggccgccggc 225
           ||||||||||||||||||||
Sbjct: 91  ggcgacgggcggccgccggc 72

>emb|AL079302.7|CNS00M8S Human chromosome 14 DNA sequence BAC R-1089B7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 204230

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   gcccaccacctgccccttcc 524
             ||||||||||||||||||||
Sbjct: 63327 gcccaccacctgccccttcc 63346

>gb|AF265347.1| Danio rerio protein kinase Bsk146 mRNA, complete cds
          Length = 2428

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 396  caagcaactcgtcttcctcc 415
            ||||||||||||||||||||
Sbjct: 1148 caagcaactcgtcttcctcc 1129

>gb|AY879595.1| Rattus norvegicus strain LEW promyelocytic leukemia zinc finger
           (Zfp145) gene, exon 2 and partial cds
          Length = 502

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 499 ggtgccgcccaccacctgcc 518
           ||||||||||||||||||||
Sbjct: 415 ggtgccgcccaccacctgcc 396

>emb|AL671117.6| Mouse DNA sequence from clone RP23-278L4 on chromosome X, complete
             sequence
          Length = 209799

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   cctgggttccatctgtagcc 249
             ||||||||||||||||||||
Sbjct: 12435 cctgggttccatctgtagcc 12416


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,165,481
Number of Sequences: 3902068
Number of extensions: 4165481
Number of successful extensions: 84493
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84276
Number of HSP's gapped (non-prelim): 217
length of query: 524
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 501
effective length of database: 17,143,297,704
effective search space: 8588792149704
effective search space used: 8588792149704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)