>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 480

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 29/32 (90%), Positives = 31/32 (96%)
 Frame = -3

Query: 471 VVDAEKLREIGFIVYSIGKPLDGWLKDMPAVA 376
           +VDA+KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct: 449 IVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480

>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid|
           X receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 35.0 bits (79), Expect = 0.099
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 325 DDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPE 453
           D A+     P DV+ E    +G  VL+PP    AD VD E  +PE
Sbjct: 801 DSASAETAEPMDVDHEECGAEGSSVLDPPAPTKADSVDPEMQVPE 845

>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein|
           homolog)
          Length = 1320

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 386 PPSPNSLSTSAGLVCLPAASSIGAAGRQGKEG 291
           PP PNS  ++ G   +PAA   GA   Q ++G
Sbjct: 717 PPVPNSTVSARGQRSVPAAGKAGAPATQAQKG 748

>LTRA_LACLC (P0A3U1) Group II intron-encoded protein ltrA [Includes:|
           Reverse-transcriptase (EC 2.7.7.49); RNA maturase (EC
           3.1.-.-); DNA endonuclease (EC 3.1.-.-)]
          Length = 599

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 18  CNNFSKTVEEPTGYKVHRIQRGKNLLGQHRGPRSLIIR 131
           C     T +E T Y++H + + KNL G+ +   ++I +
Sbjct: 542 CCELCGTSDENTSYEIHHVNKVKNLKGKEKWEMAMIAK 579

>LTRA_LACLA (P0A3U0) Group II intron-encoded protein ltrA [Includes:|
           Reverse-transcriptase (EC 2.7.7.49); RNA maturase (EC
           3.1.-.-); DNA endonuclease (EC 3.1.-.-)]
          Length = 599

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 18  CNNFSKTVEEPTGYKVHRIQRGKNLLGQHRGPRSLIIR 131
           C     T +E T Y++H + + KNL G+ +   ++I +
Sbjct: 542 CCELCGTSDENTSYEIHHVNKVKNLKGKEKWEMAMIAK 579

>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)|
          Length = 302

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 316 APIDDAAGRQTRPADVESE-LGDGGHVLEPPVERLADGVDDEADLPELLGVDD 471
           A  D AA  ++ PAD E E + +    +E  ++ LAD V+ E +  E   VDD
Sbjct: 229 ADADAAAEPESEPADFEDEEVIETDDDVEEELDELADAVEGEDEDDEFSDVDD 281

>DDX58_MOUSE (Q6Q899) Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)|
           (DEAD-box protein 58) (Retinoic acid-inducible gene 1
           protein) (RIG-1) (RIG-I)
          Length = 926

 Score = 24.6 bits (52), Expect(2) = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 137 CRSYNQTPRPP--VLSEEVFSPLYPMNF 60
           C++ +Q P PP    S  + SPL P N+
Sbjct: 220 CQNLSQNPGPPSEASSNNLHSPLKPRNY 247



 Score = 22.3 bits (46), Expect(2) = 8.4
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = -3

Query: 396 KDMPAVA*FALHVGRPRLSAGGVVDRGCRKAGEGRKEDEXXXXXXXXPFFIVCVLQEKHQ 217
           ++ P V   AL     + S   +VD+G ++A     ED+         F     +QE+ +
Sbjct: 165 ENWPKVLQLALEKDNSKFSELWIVDKGFKRAESKADEDDGAEASSIQIF-----IQEEPE 219

Query: 216 QQFLAR 199
            Q L++
Sbjct: 220 CQNLSQ 225

>VIRD3_AGRRH (P13463) Protein virD3|
          Length = 678

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 269 QTTGSSSFLPSPAFLQPRSTTPPADRRGRPTWRAN*ATAGMSLSHPSSGL 418
           +T+  SS LP P  +    + PP++  GR T       +G ++S P  GL
Sbjct: 204 ETSQESSTLPDPTSVSALYSGPPSEWVGRDTGYETDRNSGDTISAPIRGL 253

>PFA5_KLULA (Q6CRV3) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 5)
          Length = 349

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 263 QTQTTGSSSFLPSPAFLQPRSTTPPADRRGRPTWRAN*ATAGMSLSHPSS 412
           + +T  S S +P  +   P     P D RG P W +N  +  MS +H S+
Sbjct: 96  EIRTVSSESAVPDNSIAPP--DIYPCDERGYPIWCSNCQSLKMSRTHHST 143

>CB027_HUMAN (Q580R0) Protein C2orf27|
          Length = 203

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 386 PPSPNSLSTSAGLVCLPAASSIGAAGRQGKE 294
           P +    +T+AG VCLPA    G AG Q KE
Sbjct: 143 PAAEGPAATAAGAVCLPA----GGAGEQEKE 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,612,922
Number of Sequences: 219361
Number of extensions: 1309664
Number of successful extensions: 4086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4086
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)