>ZEP2_RAT (Q00900) Human immunodeficiency virus type I enhancer-binding|
           protein 2 homolog (DNA-binding protein AGIE-BP1)
           (Angiotensinogen gene-inducible enhancer-binding protein
           1) (Myc intron-binding protein 1)
          Length = 2437

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
 Frame = +3

Query: 183 FPLSNPSLFK*VIHNSTDIRYNS--TAKAQALPVPPSTKQSHS---QVRGLLQVLHPAP- 344
           FP SNP L +  + +S  IR NS  T+ A  L +PPS + SHS   ++ G   V +P   
Sbjct: 523 FPGSNPILLEAPVDSSPLIRSNSMPTSSATNLSIPPSLRGSHSFDERMTGSDDVFYPGTV 582

Query: 345 --PPQR 356
             PPQR
Sbjct: 583 GIPPQR 588

>ZEP2_MOUSE (Q3UHF7) Human immunodeficiency virus type I enhancer-binding|
           protein 2 homolog (Myc intron-binding protein 1)
           (MIBP-1)
          Length = 2430

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
 Frame = +3

Query: 192 SNPSLFK*VIHNSTDIRYNS--TAKAQALPVPPSTKQSHS---QVRGLLQVLHPAP---P 347
           SNP L +  + +S  IR NS  T+ A  L VPPS + SHS   ++ G   V +P     P
Sbjct: 526 SNPMLLEAPVDSSPLIRSNSMPTSSATNLSVPPSLRGSHSFDERMTGSDDVFYPGTVGIP 585

Query: 348 PQR 356
           PQR
Sbjct: 586 PQR 588

>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
            [Contains: Nuclear pore complex protein Nup98
            (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
            complex protein Nup96 (Nucleoporin Nup96) (96 kDa
            nucleoporin)]
          Length = 1729

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 249  STAKAQALPVPPSTKQSHSQVRGLLQVLH--PAPPPQRDRPVVEQL 380
            ST K +  P+PP+     SQ   L   L+  PAPPPQ   P VEQL
Sbjct: 900  STKKLKTAPLPPA-----SQTTPLQMALNGKPAPPPQSQSPEVEQL 940

>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding|
           protein 2 (HIV-EP2) (MHC-binding protein 2) (MBP-2)
          Length = 2446

 Score = 33.9 bits (76), Expect = 0.095
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
 Frame = +3

Query: 183 FPLSNPSLFK*VIHNSTDIRYNS--TAKAQALPVPPSTKQSHS---QVRGLLQVLHPAP- 344
           F  SNP L +  + +S  IR NS  T+ A  L +PPS + SHS   ++ G   V +P   
Sbjct: 523 FQGSNPVLLEAPVDSSPLIRSNSVPTSSATNLTIPPSLRGSHSFDERMTGSDDVFYPGTV 582

Query: 345 --PPQR 356
             PPQR
Sbjct: 583 GIPPQR 588

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 252  TAKAQALPVPPSTKQSHSQVRGLLQVLHPAPPPQRDRPVVEQ 377
            + K Q+ P PP     H  V+  LQ   P PPP + +P  +Q
Sbjct: 947  SVKVQSQPPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQ 988

>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID|
            domain-containing protein 2) (BRG1-associated factor 200)
            (BAF200)
          Length = 1835

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 186  PLSNPSLFK*VIHNSTDIRYNSTAKAQALPVPPSTKQSHSQVRGLLQVLHPAPPPQRDRP 365
            P S+PS      +N      +S++  Q+   PP+  Q  S  R   Q   PAPPPQ+ + 
Sbjct: 970  PSSSPSPVP-ATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQQVQV 1028

Query: 366  VVEQ 377
             V+Q
Sbjct: 1029 QVQQ 1032

>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4|
          Length = 211

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 219 IHNSTDIRYNSTAKAQALPVPPSTKQSHSQV 311
           I N  D  YNS +++QA P PPS++    QV
Sbjct: 37  IMNPNDPEYNSDSQSQAPPHPPSSRTKPEQV 67

>WIF1_DROME (Q9W3W5) Protein shifted precursor (WIF-1-like protein)|
          Length = 456

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 9/29 (31%)
 Frame = +1

Query: 262 HKHCQCHP---------QRSSHIHR*GDS 321
           HKHC+CHP         ++  H+HR  DS
Sbjct: 426 HKHCKCHPGFYGRHCNGRKRRHVHRNDDS 454

>MPPA_BLAEM (P97997) Mitochondrial-processing peptidase alpha subunit,|
           mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP)
          Length = 474

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 165 LIVNSFFPLSNPSLFK*VIHNSTDIRYNSTAKAQALPVPPSTKQSHSQVRGLLQVLHPAP 344
           L+  +F P S  +    V H+  +  Y   +    +P PP T  ++ Q    +QV  P P
Sbjct: 211 LVSKAFVPSSTRAPSS-VTHSDIETAYVGGSHQLVIPKPPPTHPNYEQTLTHVQVAFPVP 269

Query: 345 P 347
           P
Sbjct: 270 P 270

>SUPT3_HUMAN (O75486) Transcription initiation protein SPT3 homolog (SPT3-like|
           protein)
          Length = 399

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 252 TAKAQALPVPPSTKQSHSQVRGLLQVLHPAPPPQRDRPVVEQ 377
           TA+A A    P    SHS+V   L  LH   PP R  P V +
Sbjct: 12  TAEATANSPSPPIAPSHSRVTFSLSTLHTLSPPPRPFPSVSR 53

>SMI1_DEBHA (Q6BW41) KNR4/SMI1 homolog 1|
          Length = 451

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 292 FVEGGTGSACAFAVELYRMSVELWMTYLNKLGLERGKKL 176
           FVE GT     +   L +  +E W++ LN+L  E+ +++
Sbjct: 329 FVEKGTNKEIPYLEVLKKRCIEKWLSSLNELNSEKSEEI 367

>SEY1_YARLI (Q6C3B0) Protein SEY1|
          Length = 938

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 285 STKQSHSQVRGLLQVLHPAPPPQRDRPVVE 374
           S   SHS    +    HPAPPP   RPV E
Sbjct: 33  SVSSSHSSHSPVTTHHHPAPPPPASRPVRE 62

>POLN_SAGV (Q9JGL0) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2466

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 246  NSTAKAQALPVPPSTKQSHSQVRGLLQVLHPAPPPQRDRPVVEQLR 383
            ++T+   A  +P  T     +V   +    P PPP+R R  V QLR
Sbjct: 1671 STTSTGSAWSLPSETTYETMEVVAEVHTEPPIPPPRRRRAAVAQLR 1716

>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 376 CSTTGRSRWGGGAGCSTWRSPLTCECDCFVEGGTGSACAF 257
           C + G S+ G G+ C     P+ C   C   GG+   C F
Sbjct: 77  CGSCGGSKGGCGSSCCV---PVCCSSSCGSCGGSKGVCGF 113

>GNL3_RAT (Q811S9) Guanine nucleotide-binding protein-like 3 (Nucleolar|
           GTP-binding protein 3) (Nucleostemin)
          Length = 538

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 17/70 (24%)
 Frame = -1

Query: 322 RSPLTCECDCFVEGGTGSACAFAVELYRMS-------VELWMTYLNK----------LGL 194
           R PL C C    E    S C   V +   S       +E W+TYLNK            L
Sbjct: 149 RDPLGCRCPQVEEAVIQSGCKKLVLVLNKSDLVPKENLENWLTYLNKELPTVVFKASTNL 208

Query: 193 ERGKKLFTIR 164
           +  KK F I+
Sbjct: 209 KNRKKTFKIK 218

>DP87_DICDI (Q04503) Prespore protein DP87 precursor|
          Length = 555

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 352 WGGGAGCSTWRSPLTCECD 296
           WGGG  C + RS  TC+ D
Sbjct: 23  WGGGRDCESHRSEYTCKSD 41

>AFAD_HUMAN (P55196) Afadin (AF-6 protein)|
          Length = 1816

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +3

Query: 138  CRPRRASSYLIV-NSFFPLSNPSLFK*VIHNSTDIRYNSTAKAQALPVPPSTKQSHSQVR 314
            C+PR AS  + + NSF P S               + NSTA  +  P+PP  K S     
Sbjct: 1755 CQPRPASDGVFLSNSFQPPS--------------AKANSTAHKKGQPLPPPKKSSS---- 1796

Query: 315  GLLQVLHPAPPPQRDRPVVEQLRLA 389
                  HP+    R + V  QL L+
Sbjct: 1797 -----YHPSHCKGRGKRVTNQLSLS 1816

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = -1

Query: 382  RSCSTTGRSRWGGGAGCSTWRSPLT------CECDC 293
            R C   GR+  GG  GC   R+P        C C+C
Sbjct: 1649 RGCRGAGRAGGGGRGGCGGGRAPGAAGGPGLCRCEC 1684

>RSN_HUMAN (Q9HD89) Resistin precursor (Cysteine-rich secreted protein FIZZ3)|
           (Adipose tissue-specific secretory factor) (ADSF)
           (C/EBP-epsilon-regulated myeloid-specific secreted
           cysteine-rich protein) (Cysteine-rich secreted protein
           A12-alpha-like 2)
          Length = 108

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 343 GAGCSTW--RSPLTCECDCFVEGGTGSAC 263
           G+ C +W  R+  TC C C     TG+ C
Sbjct: 75  GSACGSWDVRAETTCHCQCAGMDWTGARC 103

>POLN_GETV (Q5Y389) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2466

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 246  NSTAKAQALPVPPSTKQSHSQVRGLLQVLHPAPPPQRDRPVVEQLR 383
            ++T+   A   P  T     +V   +    P PPP+R R  V QLR
Sbjct: 1671 STTSTGSAWSFPSETTYETMEVVAEVHTEPPIPPPRRRRAAVAQLR 1716

>HTK16_HYDAT (P53356) Tyrosine-protein kinase HTK16 (EC 2.7.10.2)|
          Length = 757

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 246 NSTAKAQALPVPPSTKQSHSQVRGLLQVLHPAPPPQRDRPVV 371
           N+    Q LP P  T +S S +   L+     P P+  RPVV
Sbjct: 410 NNNGLPQPLPYPEFTNESDSDIFTRLECEKEKPLPKLPRPVV 451

>PCQAP_HUMAN (Q96RN5) Positive cofactor 2 glutamine/Q-rich-associated protein|
           (PC2 glutamine/Q-rich-associated protein) (TPA-inducible
           gene 1 protein) (TIG-1) (Activator-recruited cofactor
           105 kDa component) (ARC105) (CTG repeat protein 7a)
          Length = 788

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 273 PVPPSTKQSHSQVRGLLQVLHPAPPPQRDRPVVEQ 377
           P PP ++    Q++ +    H  PPPQ  +P V Q
Sbjct: 278 PQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQ 312

>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +3

Query: 258  KAQALPV----PPSTKQSHSQVRGLLQVLHPAPPPQRDRPVVEQLRLA 389
            KAQ  PV    P   +Q   Q +   Q   P PPPQ+  P V Q + A
Sbjct: 2450 KAQQPPVTQPPPQQQQQQQQQQQQQQQQQQPPPPPQQPPPPVPQPQAA 2497

>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)|
          Length = 963

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 279 PPSTKQSHSQVRGLLQVLHPAPPPQRDRP 365
           PPST   HS       + +P PPP+   P
Sbjct: 194 PPSTSAPHSSPNNRTSLYNPQPPPKTGYP 222

>PDLI4_RAT (P36202) PDZ and LIM domain protein 4 (LIM protein RIL)|
           (Reversion-induced LIM protein) (RIT-18) (H-REV18)
          Length = 330

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 270 LPVPPSTKQSHSQVRGLLQVLHPAPPPQRDRP 365
           LPVP +   +   +   +  LH +PPP  D P
Sbjct: 142 LPVPHNGSSNEVTLPSQMSALHVSPPPSADTP 173

>CREA_ASPNG (Q05620) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 427

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 222 HNSTDIRYNSTAKAQALPVPPSTKQSHSQVRGLLQVLHPAPPPQRDRPVVEQLR 383
           +NSTD   ++   +   P  PS+ QS+S +   + +L P    +  RP  E++R
Sbjct: 18  NNSTDSTPSTPVDSSKTPSTPSSTQSNSNMASSVSLLPPL--MKGARPATEEVR 69

>YP83_CAEEL (Q09441) Hypothetical protein C08B11.3 in chromosome II|
          Length = 1244

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 25/87 (28%), Positives = 37/87 (42%)
 Frame = +2

Query: 53   WLNLSRLSSSHTLSNIKGHFLRR*RGLKLPTKTGLIVPDSEQLLSPFQPKFV*VGHPQFH 232
            WL LSRL S+H LS +     +     +   K    VP S  L S        +      
Sbjct: 1108 WLALSRLESAHALSQLLSELHQAPAAEEEQQKMLSEVPSSASLSS--------MAGSSSQ 1159

Query: 233  RHTIQLDSESTSTASATLNEAVTFTGK 313
              T+  DS ++S ASA + E+ + + K
Sbjct: 1160 LPTVP-DSPTSSVASAPMKESTSVSNK 1185

>YGK9_YEAST (P53138) Hypothetical 12.4 kDa protein in TAF60-MLC1 intergenic|
           region
          Length = 107

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 184 FPFPTQVCLSRSSTIPQTYDTTRQRKHKHCQCHPQRSSH 300
           FPFP+Q   SR   + ++Y+T    +   C   P  + H
Sbjct: 52  FPFPSQHAFSRPLPLSESYETWHALELAFCLTRPYCTFH 90

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
            chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 252  TAKAQALPVPPSTKQSHSQV-RGLLQVLHPAPPPQRDRPVVEQ 377
            + K Q+ P PP     H  V +  LQ   P PPP + +P  +Q
Sbjct: 949  SVKVQSQPPPPLPPPPHPSVQQQQLQPQPPPPPPPQPQPPPQQ 991

>LAMA2_MOUSE (Q60675) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
            heavy chain)
          Length = 3106

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/48 (29%), Positives = 17/48 (35%)
 Frame = -1

Query: 406  SAVPMMARRSCSTTGRSRWGGGAGCSTWRSPLTCECDCFVEGGTGSAC 263
            S  P  +   CS   R  W           PL   CDCF+ G   + C
Sbjct: 1076 SCHPKFSGMKCSECSRGHWN---------YPLCTLCDCFLPGTDATTC 1114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,754,305
Number of Sequences: 219361
Number of extensions: 1280107
Number of successful extensions: 3741
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3730
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)