>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                            
Query: 318      ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 377
                |||||||| ||| ||||||| ||| |||||||||| |||||||||||| | |||||||||
Sbjct: 15542350 ctcctccaagtgttgcaccctgcatctccgccccaacgggatcggccgctggtagaacag 15542409

                   
Query: 378      ctc 380
                |||
Sbjct: 15542410 ctc 15542412



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 318      ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 377
                |||||||| ||| ||||||| ||| || ||||||| |||||||||||| | |||||||||
Sbjct: 15685603 ctcctccaagtgttgcaccctgcatctgcgccccaacgggatcggccgctggtagaacag 15685544

                   
Query: 378      ctc 380
                |||
Sbjct: 15685543 ctc 15685541

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                            
Query: 318      ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 377
                |||||||| ||| ||||||| ||| |||||||||| |||||||||||| | |||||||||
Sbjct: 15497615 ctcctccaagtgttgcaccctgcatctccgccccaacgggatcggccgctggtagaacag 15497674

                   
Query: 378      ctc 380
                |||
Sbjct: 15497675 ctc 15497677



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 318      ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 377
                |||||||| ||| ||||||| ||| || ||||||| |||||||||||| | |||||||||
Sbjct: 15638836 ctcctccaagtgttgcaccctgcatctgcgccccaacgggatcggccgctggtagaacag 15638777

                   
Query: 378      ctc 380
                |||
Sbjct: 15638776 ctc 15638774

>emb|BX276100.4|CNS09S4X Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0076H14
             of library OSJNBa from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 53315

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                         
Query: 318   ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 377
             |||||||| ||| ||||||| ||| |||||||||| |||||||||||| | |||||||||
Sbjct: 37170 ctcctccaagtgttgcaccctgcatctccgccccaacgggatcggccgctggtagaacag 37229

                
Query: 378   ctc 380
             |||
Sbjct: 37230 ctc 37232

>dbj|AK060141.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G07, full
           insert sequence
          Length = 975

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 318 ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 377
           |||||||| ||| ||||||| ||| || ||||||| |||||||||||| | |||||||||
Sbjct: 774 ctcctccaagtgttgcaccctgcatctgcgccccaacgggatcggccgctggtagaacag 715

              
Query: 378 ctc 380
           |||
Sbjct: 714 ctc 712

>emb|AL954854.3|CNS08CD8 Oryza sativa chromosome 12, . BAC OSJNBa0080D17 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159718

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 318    ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 377
              |||||||| ||| ||||||| ||| || ||||||| |||||||||||| | |||||||||
Sbjct: 140052 ctcctccaagtgttgcaccctgcatctgcgccccaacgggatcggccgctggtagaacag 140111

                 
Query: 378    ctc 380
              |||
Sbjct: 140112 ctc 140114

>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 47    acgacttggttaaatctcagtcgattaagctcaagccacacccttt 92
             ||||||||||||||||| |||||| | || || |||||||||||||
Sbjct: 70681 acgacttggttaaatcttagtcgactgagatctagccacacccttt 70726

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 323     ccaggtgctgcacccggcacct 344
               ||||||||||||||||||||||
Sbjct: 4479810 ccaggtgctgcacccggcacct 4479831

>gb|AC102907.11| Mus musculus chromosome 1, clone RP24-291E1, complete sequence
          Length = 185121

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     taagctcaagccacacccttt 92
              |||||||||||||||||||||
Sbjct: 168031 taagctcaagccacacccttt 168051

>emb|AL359845.30| Human DNA sequence from clone RP11-41L14 on chromosome X tight junction
             protein 4 (peripheral) (TJP4) pseudogene, complete
             sequence
          Length = 122272

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 305   acaggtaaggggactcctcca 325
             |||||||||||||||||||||
Sbjct: 72187 acaggtaaggggactcctcca 72207

>gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, complete sequence
          Length = 167245

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   agcactgccagtgccaccctc 286
             |||||||||||||||||||||
Sbjct: 81185 agcactgccagtgccaccctc 81205

>gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167238

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   agcactgccagtgccaccctc 286
             |||||||||||||||||||||
Sbjct: 81179 agcactgccagtgccaccctc 81199

>gb|AC009162.11| Homo sapiens chromosome 16 clone RP11-76H6, complete sequence
          Length = 181650

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    agcactgccagtgccaccctc 286
              |||||||||||||||||||||
Sbjct: 141918 agcactgccagtgccaccctc 141898

>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
             sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   gccatcatcggcaccgccga 406
             ||||||||||||||||||||
Sbjct: 24537 gccatcatcggcaccgccga 24518

>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 49     gacttggttaaatctcagtcgattaagctcaagccacacccttt 92
              ||||||||||||||| |||| | | || || |||||||||||||
Sbjct: 197738 gacttggttaaatcttagtcaactgagatctagccacacccttt 197695

>gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete sequence
          Length = 90044

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    tcaagattgatattataaaacaac 48
             |||||||||||||| |||||||||
Sbjct: 17833 tcaagattgatattttaaaacaac 17810

>ref|XM_571279.1| Cryptococcus neoformans var. neoformans JEC21 rRNA
           modification-related protein (CNF00090) partial mRNA
          Length = 1831

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 gccatcatcggcaccgccga 406
           ||||||||||||||||||||
Sbjct: 283 gccatcatcggcaccgccga 264

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 380     ccgccttgccatcatcggca 399
               ||||||||||||||||||||
Sbjct: 1760634 ccgccttgccatcatcggca 1760615

>emb|BX927149.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 2/10
          Length = 349887

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    gccatcatcggcaccgccga 406
              ||||||||||||||||||||
Sbjct: 261834 gccatcatcggcaccgccga 261815

>emb|AJ630362.1| Canis familiaris MHC class II region on chromosome CFA12, partial
             sequence, BAC clone 236k8, gene for protein similar to
             butyrophilin subfamily 1 member A1 (BTN1A1), FK506-binding
             protein 1A pseudogene, BTNL2 gene, ATP5L pseudogene,
             DLA-DRA1 gene, RPL7A pseudogene and DLA-DRB1 gene
          Length = 135953

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   cctgatagtgaacagcttctttcc 187
             ||||||||||||||||| ||||||
Sbjct: 38074 cctgatagtgaacagctgctttcc 38097

>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    gccatcatcggcaccgccga 406
              ||||||||||||||||||||
Sbjct: 609854 gccatcatcggcaccgccga 609835

>gb|AF180120.1| Symbiodinium microadriaticum isolate zCassx-cultB internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 540

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 aagcagtcacattcacaggt 310
           ||||||||||||||||||||
Sbjct: 50  aagcagtcacattcacaggt 31

>gb|AF180119.1| Symbiodinium microadriaticum isolate zCassx-cultA internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 537

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 aagcagtcacattcacaggt 310
           ||||||||||||||||||||
Sbjct: 50  aagcagtcacattcacaggt 31

>emb|AJ224997.1|RNO224997 Rattus norvegicus hd gene, exon 1 and partial CDS
          Length = 2368

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 ttctttcccctttccaaccc 199
           ||||||||||||||||||||
Sbjct: 837 ttctttcccctttccaaccc 856

>dbj|D10552.1|HAMMTII Cricetulus griseus gene for metallothionein II, complete cds
          Length = 2183

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 330 ctgcacccggcacctccgccccag 353
           ||||||||||| ||||||||||||
Sbjct: 640 ctgcacccggcccctccgccccag 663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,153,821
Number of Sequences: 3902068
Number of extensions: 3153821
Number of successful extensions: 59354
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59192
Number of HSP's gapped (non-prelim): 162
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)