Clone Name | rbart21c09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK120070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003N07, full insert sequence Length = 2128 Score = 127 bits (64), Expect = 3e-26 Identities = 127/148 (85%) Strand = Plus / Minus Query: 250 gctggagctttgcagactgggcaccagttcttctgcaggagccactggcgaatgcagcac 309 |||| ||||||||| | ||| ||||||||||||||| |||||||||| ||||||||||| Sbjct: 1979 gctgaagctttgcatattggacaccagttcttctgcctgagccactggtgaatgcagcac 1920 Query: 310 acatggtactggtgctcgcaccgcaacctgccaacctcttcgcccttcacgaactcctcc 369 ||||||||||| ||||| || | || || ||||| ||||| |||| | | |||||||| Sbjct: 1919 acatggtactgatgctcacatcccagccgtccaacttcttcaccctctatgtactcctcc 1860 Query: 370 tggcatatgctgcatttgatgtcatcta 397 ||||||||||||||||||||||| |||| Sbjct: 1859 tggcatatgctgcatttgatgtcgtcta 1832
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Minus Query: 250 gctggagctttgcagactgggcaccagttcttctgcaggagccactggcgaatgcagcac 309 |||| ||||||||| | ||| ||||||||||||||| |||||||||| ||||||||||| Sbjct: 2795256 gctgaagctttgcatattggacaccagttcttctgcctgagccactggtgaatgcagcac 2795197 Query: 310 acatggtactggtgctc 326 ||||||||||| ||||| Sbjct: 2795196 acatggtactgatgctc 2795180 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 368 cctggcatatgctgcatttgatgtcatcta 397 ||||||||||||||||||||||||| |||| Sbjct: 2794505 cctggcatatgctgcatttgatgtcgtcta 2794476
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Minus Query: 250 gctggagctttgcagactgggcaccagttcttctgcaggagccactggcgaatgcagcac 309 |||| ||||||||| | ||| ||||||||||||||| |||||||||| ||||||||||| Sbjct: 63484 gctgaagctttgcatattggacaccagttcttctgcctgagccactggtgaatgcagcac 63425 Query: 310 acatggtactggtgctc 326 ||||||||||| ||||| Sbjct: 63424 acatggtactgatgctc 63408 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 368 cctggcatatgctgcatttgatgtcatcta 397 ||||||||||||||||||||||||| |||| Sbjct: 62733 cctggcatatgctgcatttgatgtcgtcta 62704
>dbj|AK066069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N02, full insert sequence Length = 2646 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 299 gaatgcagcacacatggtactggtgctcgcaccgcaacctgccaacctcttcgcccttca 358 |||||||| |||||||||| || ||||| ||| ||| ||| ||||| |||||||||| | Sbjct: 2038 gaatgcaggacacatggtattgatgctcacactgcatcctaccaacttcttcgccctcaa 1979 Query: 359 cgaactcctcctggcatatgctgcatttgatgtcatcta 397 | | |||||||| ||||||||||| ||| |||||||| Sbjct: 1978 tgtattcctcctgacatatgctgcacttggcgtcatcta 1940
>ref|XM_473782.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 364 tcctcctggcatatgctgcattt 386 ||||||||||||||||||||||| Sbjct: 974 tcctcctggcatatgctgcattt 952
>emb|Z75710.1|CED1081 Caenorhabditis elegans Cosmid D1081, complete sequence Length = 38356 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 179 atagtaatttattttacaggttc 201 ||||||||||||||||||||||| Sbjct: 33971 atagtaatttattttacaggttc 33993
>gb|AC158630.5| Mus musculus 10 BAC RP23-440F7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 191380 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 68 tcacagctcacacttcacagggc 90 ||||||||||||||||||||||| Sbjct: 165350 tcacagctcacacttcacagggc 165372
>dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077P18, full insert sequence Length = 1493 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 364 tcctcctggcatatgctgcattt 386 ||||||||||||||||||||||| Sbjct: 1129 tcctcctggcatatgctgcattt 1107
>dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160D07, full insert sequence Length = 1363 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 364 tcctcctggcatatgctgcattt 386 ||||||||||||||||||||||| Sbjct: 1129 tcctcctggcatatgctgcattt 1107
>dbj|AK059404.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B09, full insert sequence Length = 694 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 364 tcctcctggcatatgctgcattt 386 ||||||||||||||||||||||| Sbjct: 460 tcctcctggcatatgctgcattt 438
>gb|AC102657.13| Mus musculus chromosome 10, clone RP23-15N10, complete sequence Length = 186954 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 68 tcacagctcacacttcacagggc 90 ||||||||||||||||||||||| Sbjct: 101558 tcacagctcacacttcacagggc 101536
>emb|BX005122.10| Zebrafish DNA sequence from clone CH211-134D11, complete sequence Length = 184142 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 96 tccatttgacattcacaaactg 117 |||||||||||||||||||||| Sbjct: 39139 tccatttgacattcacaaactg 39118
>emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12, complete sequence Length = 211571 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 atcgcatagtaatttatttta 194 ||||||||||||||||||||| Sbjct: 130867 atcgcatagtaatttatttta 130847
>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16, complete sequence Length = 175425 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 aactgataacagtttggcattcac 55 ||||| |||||||||||||||||| Sbjct: 135239 aactgttaacagtttggcattcac 135262
>ref|XM_656058.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3546.2), mRNA Length = 2421 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 aactcctcctggcatatgctgcat 384 |||||||||||||| ||||||||| Sbjct: 2333 aactcctcctggcagatgctgcat 2310
>gb|AY355753.1| Canis familiaris isolate cOR51A16 olfactory receptor family 51 subfamily A-like gene, partial sequence Length = 918 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 ttgatgtcatctatggctgttttg 408 |||||||||||||||||| ||||| Sbjct: 590 ttgatgtcatctatggcttttttg 613
>ref|XM_847501.1| PREDICTED: Canis familiaris cOR51A16 olfactory receptor family 51 subfamily A-like (cOR51A16), mRNA Length = 1650 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 ttgatgtcatctatggctgttttg 408 |||||||||||||||||| ||||| Sbjct: 1295 ttgatgtcatctatggcttttttg 1318
>emb|AL118522.32|HSDJ781B1 Human DNA sequence from clone RP4-781B1 on chromosome 20 Contains the 5' end of a novel gene, the KCNK15 gene for potassium channel subfamily K member 15, a novel gene, the RIMS4 gene for regulating synaptic membrane exocytosis 4 and three CpG islands, complete sequence Length = 107109 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cacacttcacagggcacaaa 95 |||||||||||||||||||| Sbjct: 10607 cacacttcacagggcacaaa 10626
>emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment 21/24 Length = 293350 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 catggtactggtgctcgcaccgca 334 |||||||||||||||||| ||||| Sbjct: 148471 catggtactggtgctcgcgccgca 148494
>gb|AF294352.1| Homo sapiens tandem acid-sensitive potassium channel TASK5 (KCNK15) gene, complete cds Length = 16930 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 cacacttcacagggcacaaa 95 |||||||||||||||||||| Sbjct: 11915 cacacttcacagggcacaaa 11896
>gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, complete sequence Length = 179357 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 tcctggcatatgctgcattt 386 |||||||||||||||||||| Sbjct: 75165 tcctggcatatgctgcattt 75184
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 aactgataacagtttggcattcac 55 ||||| |||||||||||||||||| Sbjct: 19266451 aactgttaacagtttggcattcac 19266474
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gcaactgataacagtttggc 49 |||||||||||||||||||| Sbjct: 4377607 gcaactgataacagtttggc 4377588
>gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, complete sequence Length = 233171 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ctcacacttcacagggcaca 93 |||||||||||||||||||| Sbjct: 9013 ctcacacttcacagggcaca 9032
>gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, complete sequence Length = 196059 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ctcacacttcacagggcaca 93 |||||||||||||||||||| Sbjct: 183627 ctcacacttcacagggcaca 183646
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 aactgataacagtttggcattcac 55 ||||| |||||||||||||||||| Sbjct: 19426000 aactgttaacagtttggcattcac 19426023 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,337,005 Number of Sequences: 3902068 Number of extensions: 4337005 Number of successful extensions: 79508 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 79354 Number of HSP's gapped (non-prelim): 154 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)