ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart21c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK120070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
3dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
4dbj|AK066069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
5ref|XM_473782.1| Oryza sativa (japonica cultivar-group), predic... 46 0.10
6emb|Z75710.1|CED1081 Caenorhabditis elegans Cosmid D1081, comple... 46 0.10
7gb|AC158630.5| Mus musculus 10 BAC RP23-440F7 (Roswell Park Canc... 46 0.10
8dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
9dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
10dbj|AK059404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
11gb|AC102657.13| Mus musculus chromosome 10, clone RP23-15N10, co... 46 0.10
12emb|BX005122.10| Zebrafish DNA sequence from clone CH211-134D11,... 44 0.40
13emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in... 42 1.6
14gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
15ref|XM_656058.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.3
16gb|AY355753.1| Canis familiaris isolate cOR51A16 olfactory recep... 40 6.3
17ref|XM_847501.1| PREDICTED: Canis familiaris cOR51A16 olfactory ... 40 6.3
18emb|AL118522.32|HSDJ781B1 Human DNA sequence from clone RP4-781B... 40 6.3
19emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.3
20gb|AF294352.1| Homo sapiens tandem acid-sensitive potassium chan... 40 6.3
21gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, com... 40 6.3
22dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
23dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.3
24gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, com... 40 6.3
25gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, co... 40 6.3
26gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3

>dbj|AK120070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003N07, full
            insert sequence
          Length = 2128

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                        
Query: 250  gctggagctttgcagactgggcaccagttcttctgcaggagccactggcgaatgcagcac 309
            |||| ||||||||| | ||| |||||||||||||||  |||||||||| |||||||||||
Sbjct: 1979 gctgaagctttgcatattggacaccagttcttctgcctgagccactggtgaatgcagcac 1920

                                                                        
Query: 310  acatggtactggtgctcgcaccgcaacctgccaacctcttcgcccttcacgaactcctcc 369
            ||||||||||| ||||| || | || ||  ||||| ||||| ||||  | | ||||||||
Sbjct: 1919 acatggtactgatgctcacatcccagccgtccaacttcttcaccctctatgtactcctcc 1860

                                        
Query: 370  tggcatatgctgcatttgatgtcatcta 397
            ||||||||||||||||||||||| ||||
Sbjct: 1859 tggcatatgctgcatttgatgtcgtcta 1832



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                           
Query: 250     gctggagctttgcagactgggcaccagttcttctgcaggagccactggcgaatgcagcac 309
               |||| ||||||||| | ||| |||||||||||||||  |||||||||| |||||||||||
Sbjct: 2795256 gctgaagctttgcatattggacaccagttcttctgcctgagccactggtgaatgcagcac 2795197

                                
Query: 310     acatggtactggtgctc 326
               ||||||||||| |||||
Sbjct: 2795196 acatggtactgatgctc 2795180



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 368     cctggcatatgctgcatttgatgtcatcta 397
               ||||||||||||||||||||||||| ||||
Sbjct: 2794505 cctggcatatgctgcatttgatgtcgtcta 2794476



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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 250   gctggagctttgcagactgggcaccagttcttctgcaggagccactggcgaatgcagcac 309
             |||| ||||||||| | ||| |||||||||||||||  |||||||||| |||||||||||
Sbjct: 63484 gctgaagctttgcatattggacaccagttcttctgcctgagccactggtgaatgcagcac 63425

                              
Query: 310   acatggtactggtgctc 326
             ||||||||||| |||||
Sbjct: 63424 acatggtactgatgctc 63408



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 368   cctggcatatgctgcatttgatgtcatcta 397
             ||||||||||||||||||||||||| ||||
Sbjct: 62733 cctggcatatgctgcatttgatgtcgtcta 62704



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>dbj|AK066069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N02, full
            insert sequence
          Length = 2646

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 299  gaatgcagcacacatggtactggtgctcgcaccgcaacctgccaacctcttcgcccttca 358
            |||||||| |||||||||| || ||||| ||| ||| ||| ||||| ||||||||||  |
Sbjct: 2038 gaatgcaggacacatggtattgatgctcacactgcatcctaccaacttcttcgccctcaa 1979

                                                   
Query: 359  cgaactcctcctggcatatgctgcatttgatgtcatcta 397
             | | |||||||| ||||||||||| |||  ||||||||
Sbjct: 1978 tgtattcctcctgacatatgctgcacttggcgtcatcta 1940



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>ref|XM_473782.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 364 tcctcctggcatatgctgcattt 386
           |||||||||||||||||||||||
Sbjct: 974 tcctcctggcatatgctgcattt 952



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>emb|Z75710.1|CED1081 Caenorhabditis elegans Cosmid D1081, complete sequence
          Length = 38356

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 179   atagtaatttattttacaggttc 201
             |||||||||||||||||||||||
Sbjct: 33971 atagtaatttattttacaggttc 33993



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>gb|AC158630.5| Mus musculus 10 BAC RP23-440F7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 191380

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 68     tcacagctcacacttcacagggc 90
              |||||||||||||||||||||||
Sbjct: 165350 tcacagctcacacttcacagggc 165372



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>dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077P18, full
            insert sequence
          Length = 1493

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 364  tcctcctggcatatgctgcattt 386
            |||||||||||||||||||||||
Sbjct: 1129 tcctcctggcatatgctgcattt 1107



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>dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160D07, full
            insert sequence
          Length = 1363

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 364  tcctcctggcatatgctgcattt 386
            |||||||||||||||||||||||
Sbjct: 1129 tcctcctggcatatgctgcattt 1107



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>dbj|AK059404.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B09, full
           insert sequence
          Length = 694

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 364 tcctcctggcatatgctgcattt 386
           |||||||||||||||||||||||
Sbjct: 460 tcctcctggcatatgctgcattt 438



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>gb|AC102657.13| Mus musculus chromosome 10, clone RP23-15N10, complete sequence
          Length = 186954

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 68     tcacagctcacacttcacagggc 90
              |||||||||||||||||||||||
Sbjct: 101558 tcacagctcacacttcacagggc 101536



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>emb|BX005122.10| Zebrafish DNA sequence from clone CH211-134D11, complete sequence
          Length = 184142

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 96    tccatttgacattcacaaactg 117
             ||||||||||||||||||||||
Sbjct: 39139 tccatttgacattcacaaactg 39118



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>emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12,
              complete sequence
          Length = 211571

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    atcgcatagtaatttatttta 194
              |||||||||||||||||||||
Sbjct: 130867 atcgcatagtaatttatttta 130847



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>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16,
              complete sequence
          Length = 175425

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     aactgataacagtttggcattcac 55
              ||||| ||||||||||||||||||
Sbjct: 135239 aactgttaacagtttggcattcac 135262



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>ref|XM_656058.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3546.2), mRNA
          Length = 2421

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 361  aactcctcctggcatatgctgcat 384
            |||||||||||||| |||||||||
Sbjct: 2333 aactcctcctggcagatgctgcat 2310



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>gb|AY355753.1| Canis familiaris isolate cOR51A16 olfactory receptor family 51
           subfamily A-like gene, partial sequence
          Length = 918

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 385 ttgatgtcatctatggctgttttg 408
           |||||||||||||||||| |||||
Sbjct: 590 ttgatgtcatctatggcttttttg 613



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>ref|XM_847501.1| PREDICTED: Canis familiaris cOR51A16 olfactory receptor family 51
            subfamily A-like (cOR51A16), mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 385  ttgatgtcatctatggctgttttg 408
            |||||||||||||||||| |||||
Sbjct: 1295 ttgatgtcatctatggcttttttg 1318



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>emb|AL118522.32|HSDJ781B1 Human DNA sequence from clone RP4-781B1 on chromosome 20 Contains the
             5' end of a novel gene, the KCNK15 gene for potassium
             channel subfamily K member 15, a novel gene, the RIMS4
             gene for regulating synaptic membrane exocytosis 4 and
             three CpG islands, complete sequence
          Length = 107109

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    cacacttcacagggcacaaa 95
             ||||||||||||||||||||
Sbjct: 10607 cacacttcacagggcacaaa 10626



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>emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment 21/24
          Length = 293350

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 311    catggtactggtgctcgcaccgca 334
              |||||||||||||||||| |||||
Sbjct: 148471 catggtactggtgctcgcgccgca 148494



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>gb|AF294352.1| Homo sapiens tandem acid-sensitive potassium channel TASK5 (KCNK15)
             gene, complete cds
          Length = 16930

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    cacacttcacagggcacaaa 95
             ||||||||||||||||||||
Sbjct: 11915 cacacttcacagggcacaaa 11896



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>gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   tcctggcatatgctgcattt 386
             ||||||||||||||||||||
Sbjct: 75165 tcctggcatatgctgcattt 75184



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 32       aactgataacagtttggcattcac 55
                ||||| ||||||||||||||||||
Sbjct: 19266451 aactgttaacagtttggcattcac 19266474



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 30      gcaactgataacagtttggc 49
               ||||||||||||||||||||
Sbjct: 4377607 gcaactgataacagtttggc 4377588



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>gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, complete sequence
          Length = 233171

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   ctcacacttcacagggcaca 93
            ||||||||||||||||||||
Sbjct: 9013 ctcacacttcacagggcaca 9032



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>gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, complete sequence
          Length = 196059

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     ctcacacttcacagggcaca 93
              ||||||||||||||||||||
Sbjct: 183627 ctcacacttcacagggcaca 183646



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 32       aactgataacagtttggcattcac 55
                ||||| ||||||||||||||||||
Sbjct: 19426000 aactgttaacagtttggcattcac 19426023


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,337,005
Number of Sequences: 3902068
Number of extensions: 4337005
Number of successful extensions: 79508
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79354
Number of HSP's gapped (non-prelim): 154
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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